VCAN 12901

Name: VCAN	Sequence: fasta or formatted (3396aa)		NCBI GI: 21361116
Description: versican isoform 1		Referenced in: Protein Glycosylation Extracellular Matrix
Other entries for this name: alt prot [655aa] versican isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 187 3 C cysteine 1.0 35 1 D aspartate 5.9 202 2 E glutamate 10.9 370 6 F phenylalanine 3.7 124 2 G glycine 5.3 180 3 H histidine 2.2 75 1 I isoleucine 5.1 172 3 K lysine 4.4 150 2 L leucine 6.0 205 2 M methionine 1.6 55 2 N asparagine 2.4 81 2 P proline 7.0 237 3 Q glutamine 3.7 124 2 R arginine 2.9 100 2 S serine 10.5 358 3 T threonine 11.8 402 3 V valine 6.7 229 2 W tryptophan 0.9 32 1 Y tyrosine 2.3 78 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 versican isoform 1 VCAN 0.103 versican isoform 2 NCAN 0.053 chondroitin sulfate proteoglycan 3 ACAN 0.050 aggrecan isoform 2 precursor ACAN 0.050 aggrecan isoform 1 precursor BCAN 0.044 brevican isoform 2 BCAN 0.044 brevican isoform 1 HAPLN1 0.028 hyaluronan and proteoglycan link protein 1 HAPLN3 0.028 hyaluronan and proteoglycan link protein 3 HAPLN2 0.025 brain link protein-1 HAPLN4 0.025 hyaluronan and proteoglycan link protein 4 MUC17 0.023 mucin 17 MUC12 0.020 PREDICTED: mucin 12 LOC729792 0.015 PREDICTED: hypothetical protein LOC100294136 0.015 PREDICTED: hypothetical protein LOC100294091 0.015 PREDICTED: hypothetical protein LOC100294501 0.015 PREDICTED: hypothetical protein LOC729792 0.015 PREDICTED: hypothetical protein LOC729792 0.015 PREDICTED: hypothetical protein LOC100294238 0.015 PREDICTED: hypothetical protein LOC100294204 0.015 PREDICTED: hypothetical protein LOC730401 0.015 PREDICTED: hypothetical protein MUC16 0.014 mucin 16 LOC100294249 0.014 PREDICTED: hypothetical protein XP_002344067 MRC2 0.012 mannose receptor, C type 2 NOTCH2 0.012 notch 2 preproprotein NOTCH1 0.011 notch1 preproprotein MUC12 0.011 PREDICTED: mucin 12, cell surface associated JAG2 0.010 jagged 2 isoform b precursor NOTCH3 0.010 Notch homolog 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.