CD44 30949

Name: CD44	Sequence: fasta or formatted (493aa)		NCBI GI: 48255939
Description: CD44 antigen isoform 3 precursor		Referenced in: Extracellular Matrix
Other entries for this name: alt prot [742aa] CD44 antigen isoform 1 precursor alt prot [699aa] CD44 antigen isoform 2 precursor alt prot [361aa] CD44 antigen isoform 4 precursor alt prot [139aa] CD44 antigen isoform 5 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.5 27 2 C cysteine 1.8 9 1 D aspartate 6.3 31 3 E glutamate 5.5 27 2 F phenylalanine 3.0 15 1 G glycine 7.7 38 2 H histidine 3.4 17 1 I isoleucine 5.5 27 2 K lysine 3.0 15 3 L leucine 6.1 30 2 M methionine 1.6 8 1 N asparagine 6.1 30 2 P proline 5.7 28 2 Q glutamine 3.0 15 2 R arginine 4.5 22 3 S serine 12.0 59 3 T threonine 10.5 52 2 V valine 5.3 26 2 W tryptophan 1.0 5 2 Y tyrosine 2.4 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 CD44 antigen isoform 3 precursor CD44 0.527 CD44 antigen isoform 2 precursor CD44 0.527 CD44 antigen isoform 1 precursor CD44 0.451 CD44 antigen isoform 4 precursor CD44 0.142 CD44 antigen isoform 5 precursor LYVE1 0.053 lymphatic vessel endothelial hyaluronan receptor 1 [... TNFAIP6 0.040 tumor necrosis factor, alpha-induced protein 6 precu... STAB1 0.027 stabilin 1 precursor MUC21 0.024 mucin 21 DSPP 0.023 dentin sialophosphoprotein preproprotein MUC4 0.021 mucin 4 isoform a ACAN 0.020 aggrecan isoform 2 precursor ACAN 0.020 aggrecan isoform 1 precursor LOC100133714 0.015 PREDICTED: similar to Mucin-12, partial FLG2 0.015 filaggrin family member 2 LOC100131514 0.014 PREDICTED: similar to hCG1747327, partial LOC100133790 0.014 PREDICTED: intestinal mucin-like, partial SELPLG 0.014 selectin P ligand LOC729792 0.014 PREDICTED: hypothetical protein LOC729792 0.014 PREDICTED: hypothetical protein LOC729792 0.014 PREDICTED: hypothetical protein LOC100294501 0.014 PREDICTED: hypothetical protein LOC100294249 0.014 PREDICTED: hypothetical protein XP_002344067 LOC100294238 0.014 PREDICTED: hypothetical protein LOC100294204 0.014 PREDICTED: hypothetical protein LOC100294136 0.014 PREDICTED: hypothetical protein LOC100294091 0.014 PREDICTED: hypothetical protein LOC730401 0.014 PREDICTED: hypothetical protein MUC6 0.013 mucin 6, gastric MUC16 0.012 mucin 16 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.