NCAN 2200

Name: NCAN	Sequence: fasta or formatted (1321aa)		NCBI GI: 118600983
Description: chondroitin sulfate proteoglycan 3		Referenced in: Protein Glycosylation Extracellular Matrix Neurons
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.8 116 2 C cysteine 2.6 34 1 D aspartate 4.6 61 2 E glutamate 8.0 106 4 F phenylalanine 2.9 38 2 G glycine 8.7 115 2 H histidine 3.3 43 5 I isoleucine 1.9 25 2 K lysine 2.3 31 2 L leucine 6.9 91 3 M methionine 1.8 24 2 N asparagine 2.8 37 2 P proline 9.9 131 3 Q glutamine 4.0 53 3 R arginine 6.1 80 3 S serine 8.6 113 4 T threonine 6.4 84 2 V valine 6.6 87 2 W tryptophan 2.1 28 1 Y tyrosine 1.8 24 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 chondroitin sulfate proteoglycan 3 VCAN 0.132 versican isoform 1 VCAN 0.129 versican isoform 2 BCAN 0.112 brevican isoform 2 BCAN 0.112 brevican isoform 1 ACAN 0.111 aggrecan isoform 2 precursor ACAN 0.111 aggrecan isoform 1 precursor HAPLN3 0.076 hyaluronan and proteoglycan link protein 3 HAPLN4 0.072 hyaluronan and proteoglycan link protein 4 HAPLN2 0.070 brain link protein-1 HAPLN1 0.068 hyaluronan and proteoglycan link protein 1 MRC2 0.035 mannose receptor, C type 2 NOTCH2 0.027 notch 2 preproprotein NOTCH1 0.026 notch1 preproprotein CRB2 0.026 crumbs homolog 2 NOTCH3 0.026 Notch homolog 3 MRC1 0.026 mannose receptor C type 1 precursor COLEC12 0.026 collectin sub-family member 12 SLIT2 0.025 slit homolog 2 FCER2 0.025 Fc fragment of IgE, low affinity II, receptor for (C... CLEC10A 0.025 C-type lectin, superfamily member 14 isoform 2 [Homo... MRC1L1 0.024 mannose receptor, C type 1-like 1 SLIT3 0.024 slit homolog 3 JAG2 0.024 jagged 2 isoform b precursor CLEC10A 0.024 C-type lectin, superfamily member 14 isoform 1 [Homo... CRB1 0.024 crumbs homolog 1 precursor JAG1 0.024 jagged 1 precursor JAG2 0.024 jagged 2 isoform a precursor DNER 0.024 delta-notch-like EGF repeat-containing transmembran... DLL1 0.023 delta-like 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.