CD44 30951

Name: CD44	Sequence: fasta or formatted (139aa)		NCBI GI: 48255943
Description: CD44 antigen isoform 5 precursor		Referenced in: Extracellular Matrix
Other entries for this name: alt prot [742aa] CD44 antigen isoform 1 precursor alt prot [699aa] CD44 antigen isoform 2 precursor alt prot [493aa] CD44 antigen isoform 3 precursor alt prot [361aa] CD44 antigen isoform 4 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.4 13 2 C cysteine 4.3 6 1 D aspartate 3.6 5 1 E glutamate 5.0 7 2 F phenylalanine 4.3 6 1 G glycine 7.9 11 2 H histidine 2.2 3 1 I isoleucine 2.9 4 1 K lysine 6.5 9 2 L leucine 6.5 9 1 M methionine 2.2 3 1 N asparagine 3.6 5 1 P proline 2.2 3 1 Q glutamine 8.6 12 2 R arginine 5.0 7 2 S serine 9.4 13 1 T threonine 4.3 6 1 V valine 5.8 8 2 W tryptophan 5.0 7 2 Y tyrosine 1.4 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 CD44 antigen isoform 5 precursor CD44 0.515 CD44 antigen isoform 4 precursor CD44 0.515 CD44 antigen isoform 3 precursor CD44 0.515 CD44 antigen isoform 2 precursor CD44 0.515 CD44 antigen isoform 1 precursor LYVE1 0.070 lymphatic vessel endothelial hyaluronan receptor 1 [... TNFAIP6 0.055 tumor necrosis factor, alpha-induced protein 6 precu... STAB1 0.048 stabilin 1 precursor HNRNPD 0.018 heterogeneous nuclear ribonucleoprotein D isoform c ... HNRNPD 0.018 heterogeneous nuclear ribonucleoprotein D isoform d ... ZAN 0.018 zonadhesin isoform 3 ZAN 0.018 zonadhesin isoform 6 STAB2 0.018 stabilin 2 precursor ACAN 0.011 aggrecan isoform 2 precursor ACAN 0.011 aggrecan isoform 1 precursor SPTBN1 0.011 spectrin, beta, non-erythrocytic 1 isoform 1 SPTBN1 0.011 spectrin, beta, non-erythrocytic 1 isoform 2 NCAN 0.011 chondroitin sulfate proteoglycan 3 LOC100132261 0.007 PREDICTED: similar to hCG2023245 CLTB 0.007 clathrin, light polypeptide isoform a FBXW12 0.007 F-box and WD repeat domain containing 12 isoform 3 ... FBXW12 0.007 F-box and WD repeat domain containing 12 isoform 1 ... CLTB 0.007 clathrin, light polypeptide isoform b FLYWCH1 0.007 FLYWCH-type zinc finger 1 isoform a VCAN 0.004 versican isoform 2 VCAN 0.004 versican isoform 1 LOC100292143 0.004 PREDICTED: hypothetical protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.