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Search of human proteins with 13236561
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13236561 ATPase family, AAA domain containing 4 [Homo
sapiens]
(103 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13236561 ATPase family, AAA domain containing 4 [Homo sapiens] 215 5e-57
gi|28557711 proline rich 15 [Homo sapiens] 42 8e-05
gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens] 31 0.24
gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens] 28 1.2
gi|187960059 syndecan 3 [Homo sapiens] 28 1.2
gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens] 28 1.2
gi|110349719 titin isoform N2-A [Homo sapiens] 28 1.6
gi|47519913 5-hydroxytryptamine receptor 3 subunit E [Homo sapiens] 28 1.6
gi|40806187 ADAM metallopeptidase with thrombospondin type 1 mot... 28 2.0
gi|33356148 formin-like 1 [Homo sapiens] 28 2.0
gi|93587342 voltage-gated sodium channel type 4 alpha [Homo sapi... 27 2.6
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 27 2.6
gi|24497601 endothelial differentiation-related factor 1 isoform... 27 3.5
gi|4503453 endothelial differentiation-related factor 1 isoform ... 27 3.5
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 26 5.9
gi|31542760 hypothetical protein LOC220108 [Homo sapiens] 26 5.9
gi|8923271 coiled-coil domain containing 49 [Homo sapiens] 26 5.9
gi|4503009 carboxypeptidase E preproprotein [Homo sapiens] 26 7.7
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 26 7.7
>gi|13236561 ATPase family, AAA domain containing 4 [Homo sapiens]
Length = 103
Score = 215 bits (548), Expect = 5e-57
Identities = 103/103 (100%), Positives = 103/103 (100%)
Query: 1 MTTEIGWWKLTFLRKKKSTPKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIVD 60
MTTEIGWWKLTFLRKKKSTPKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIVD
Sbjct: 1 MTTEIGWWKLTFLRKKKSTPKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIVD 60
Query: 61 KSTKGKHVKVSNSGRFKEKKKVRATLAENPNLFDDHEEGRSSK 103
KSTKGKHVKVSNSGRFKEKKKVRATLAENPNLFDDHEEGRSSK
Sbjct: 61 KSTKGKHVKVSNSGRFKEKKKVRATLAENPNLFDDHEEGRSSK 103
>gi|28557711 proline rich 15 [Homo sapiens]
Length = 129
Score = 42.4 bits (98), Expect = 8e-05
Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 27/101 (26%)
Query: 7 WWK-LTFLRKKKSTPKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNT------------ 53
WWK LT RKK V +P G+ PP P P+ D+ +
Sbjct: 13 WWKSLTNSRKKSKEAAV--GVPPPAQPAPGEPTPPAP----PSPDWTSSSRENQHPNLLG 66
Query: 54 ------RLEKIV-DKS-TKGKHVKVSNSGRFKEKKKVRATL 86
+ +K+ DKS + +++K+S SGRFKEK+KVRATL
Sbjct: 67 GAGEPPKPDKLYGDKSGSSRRNLKISRSGRFKEKRKVRATL 107
>gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens]
Length = 5890
Score = 30.8 bits (68), Expect = 0.24
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 20 PKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNT 53
PKV ++ T + EGD + P D GP D NT
Sbjct: 4733 PKVKGDVDVTLPKVEGDLKGPEADIKGPKVDINT 4766
Score = 28.5 bits (62), Expect = 1.2
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 20 PKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIVDKSTKGKHVKVSNSGRFKEK 79
PKV ++ + + EGD + P D GP+ D +T D + +G K+ +
Sbjct: 4397 PKVKGDVDVSLPKVEGDLKGPEIDIKGPSLDIDT-----PDVNIEGPEGKLKGPKFKMPE 4451
Query: 80 KKVRATLAENPNLFDDHEEGRSSK 103
++A P+ FD H +G K
Sbjct: 4452 MNIKAPKISMPD-FDLHLKGPKVK 4474
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 20 PKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFN 52
PKV ++ + + EGD + P D GP D N
Sbjct: 2591 PKVKGDVDVSLPKVEGDLKGPEVDIKGPKVDIN 2623
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 20 PKVLYEIPDTYAQTEGDAEPPRPDAGGPN-----SDFNTRLEKI 58
PKV E T + EGD + P+ D P+ D+N ++ KI
Sbjct: 958 PKVKGEYDMTVPKLEGDLKGPKVDVSAPDVEMQGPDWNLKMPKI 1001
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 20 PKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFN 52
PKV ++ + + EGD + P D GP D N
Sbjct: 3555 PKVKGDVDISLPKLEGDLKGPEVDIKGPKVDIN 3587
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 20 PKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFN 52
PKV ++ + + EGD + P D GP D N
Sbjct: 3757 PKVKGDVDVSLPKMEGDLKGPEVDIKGPKVDIN 3789
>gi|109637784 GLIS family zinc finger 3 isoform a [Homo sapiens]
Length = 930
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 56 EKIVDKSTKGKHVKVSNSGRFKEKKKVRATLAENPNLFDD 95
++ D S+ KHVK +S + +KK+R++ +P+L D
Sbjct: 636 KRYTDPSSLRKHVKAHSSKEQQARKKLRSSTELHPDLLTD 675
>gi|187960059 syndecan 3 [Homo sapiens]
Length = 442
Score = 28.5 bits (62), Expect = 1.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 27 PDTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIVDKSTKGKHVKVSNS 73
P+T+ T D EP P +GGP+ DF E+ T + V V +
Sbjct: 294 PETFLTTIRD-EPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGA 339
>gi|109637782 GLIS family zinc finger 3 isoform b [Homo sapiens]
Length = 775
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 56 EKIVDKSTKGKHVKVSNSGRFKEKKKVRATLAENPNLFDD 95
++ D S+ KHVK +S + +KK+R++ +P+L D
Sbjct: 481 KRYTDPSSLRKHVKAHSSKEQQARKKLRSSTELHPDLLTD 520
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 16 KKSTPKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIVDKSTKGKHVKVSNSGR 75
KK KV+ + + + E +PP P P + +I+D S+K + VK+ R
Sbjct: 8990 KKDAKKVVAKPKEMTPREEIVKKPPPPTTLIP-----AKAPEIIDVSSKAEEVKIMTITR 9044
Query: 76 FKEKKKVRATLAENPNLFDDHEEGR 100
KE +K + + E H+E R
Sbjct: 9045 KKEVQKEKEAVYEKKQAV--HKEKR 9067
>gi|47519913 5-hydroxytryptamine receptor 3 subunit E [Homo sapiens]
Length = 471
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 59 VDKSTKGKHVKVSNSGRFKEKKKVRATLAENPNLF 93
VDK+ KG VSN GR + KK ++ N ++F
Sbjct: 148 VDKTPKGLTAYVSNEGRIRYKKPMKVDSICNLDIF 182
>gi|40806187 ADAM metallopeptidase with thrombospondin type 1 motif,
18 preproprotein [Homo sapiens]
Length = 1221
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 14 RKKKSTPKVLYEIPDTYAQTE--GDAEPPRPDAGGPNSDFNTRLEKIVDKSTKGKHVK 69
R+KK PK E DTY + + G + PR AG N + DK KH K
Sbjct: 256 RRKKYAPKPPTE--DTYLRFDEYGSSGRPRRSAGKSQKGLNVETLVVADKKMVEKHGK 311
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 2 TTEIGWWKLTFLRKKKSTPKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIVDK 61
T IGW + FL ++ VL E +AQ + D G NS+ N LE+ V+
Sbjct: 130 TNHIGWVQ-EFLNEENRGLDVLLEYL-AFAQCSVTYDMESTDNGASNSEKNKPLEQSVED 187
Query: 62 STKGKHVKVSNS 73
+KG V S
Sbjct: 188 LSKGPPSSVPKS 199
>gi|93587342 voltage-gated sodium channel type 4 alpha [Homo sapiens]
Length = 1836
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 25 EIPDTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIVDKSTKGKHVKVSNSGRFKEKKKVRA 84
E DT+++ E +PP+P G +S +T K ++ + + + + G E+ A
Sbjct: 939 EETDTFSEPEDSKKPPQPLYDGNSSVCSTADYKPPEEDPE-EQAEENPEGEQPEECFTEA 997
Query: 85 TLAENPNLFDDHEEGRSSK 103
+ P L+ D +GR K
Sbjct: 998 CVQRWPCLYVDISQGRGKK 1016
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 27.3 bits (59), Expect = 2.6
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 34 EGDAEPPRPDAGGPNSDFNTRLEKIVDKSTKGKHVKVSNSGRFKEKKKVRATLAENP 90
EG AEP P GP+S+ +V KS +G+ K N R + TL +P
Sbjct: 921 EGGAEPKDPPPPGPHSEDLKVPPGVVRKSRRGRRRKY-NPTRNSNSSRQDITLEPSP 976
>gi|24497601 endothelial differentiation-related factor 1 isoform
beta [Homo sapiens]
Length = 139
Score = 26.9 bits (58), Expect = 3.5
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 4 EIGWWKLTFLRKKKSTP-KVLYEIPDTYAQTEG-DAEPPRPDAGGPNSDFN-TRLEKIVD 60
E W +T LRKK T + + AQ G D E + A G N + T+ +D
Sbjct: 3 ESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLD 62
Query: 61 KSTKGKHV--------KVSNSGRFKE---KKKVRATLAENPNLFDDHEEGRS 101
+ T+ H KV GR + +K + + E P + D+E GR+
Sbjct: 63 RETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRA 114
>gi|4503453 endothelial differentiation-related factor 1 isoform
alpha [Homo sapiens]
Length = 148
Score = 26.9 bits (58), Expect = 3.5
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 4 EIGWWKLTFLRKKKSTP-KVLYEIPDTYAQTEG-DAEPPRPDAGGPNSDFN-TRLEKIVD 60
E W +T LRKK T + + AQ G D E + A G N + T+ +D
Sbjct: 3 ESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLD 62
Query: 61 KSTKGKHV--------KVSNSGRFKE---KKKVRATLAENPNLFDDHEEGRS 101
+ T+ H KV GR + +K + + E P + D+E GR+
Sbjct: 63 RETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRA 114
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 26.2 bits (56), Expect = 5.9
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 18 STPKVLYEIP----------DTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIV----DKST 63
S P +L ++P D +GDA PP P A GP + R K V ++ T
Sbjct: 7 SEPGLLSDVPKFASWGDGEDDEPRSDKGDAPPPPPPAPGPGAPGPARAAKPVPLRGEEGT 66
Query: 64 KGKHVKVSNSG 74
+ +V G
Sbjct: 67 EATLAEVKEEG 77
>gi|31542760 hypothetical protein LOC220108 [Homo sapiens]
Length = 582
Score = 26.2 bits (56), Expect = 5.9
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 20/70 (28%)
Query: 1 MTTEIGWWKLTFLRKKKS----TPKVLYEIPDTYA----------------QTEGDAEPP 40
+TTE W L F K+ S T + P T QT+GD PP
Sbjct: 507 VTTEASWASLPFFTKRSSSSSATARAAPPAPSTSTLTDSSPQLPCDTPKVKQTDGDMPPP 566
Query: 41 RPDAGGPNSD 50
AG ++D
Sbjct: 567 PGSAGPGDND 576
>gi|8923271 coiled-coil domain containing 49 [Homo sapiens]
Length = 425
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 54 RLEKIVDKSTKGKHVKVSNSGRFKEKK-KVRATLAENPNLFDDHEEGRSSK 103
++++++ S + K K + K KK K R++ ++ + D+H GRS K
Sbjct: 162 KIKELLQMSLEKKEKKKKKEKKKKHKKHKHRSSSSDRSSSEDEHSAGRSQK 212
>gi|4503009 carboxypeptidase E preproprotein [Homo sapiens]
Length = 476
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 45 GGPNSDFNTRLEKIVDKSTK 64
GGPN+ ++KIVD++TK
Sbjct: 205 GGPNNHLLKNMKKIVDQNTK 224
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 9 KLTFLRKKKSTPKVLYEIPDTYAQTEGDAEPPRPDAGGPNSDFNTRLEKIVD 60
K T LR +K L+E Y + A+P +P A G + T +E++ D
Sbjct: 402 KWTQLRIRKENLTRLFEKMQAYQYEQISADPDKPLADGIRALDTTDMERLKD 453
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,591,580
Number of Sequences: 37866
Number of extensions: 201623
Number of successful extensions: 509
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 52
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.