Guide to the Human Genome
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Name: ATAD4 Sequence: fasta or formatted (103aa) NCBI GI: 13236561
Description:

ATPase family, AAA domain containing 4

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          5           1
 C cysteine            0.0          0           0
 D aspartate           6.8          7           2
 E glutamate           8.7          9           2
 F phenylalanine       3.9          4           1
 G glycine             6.8          7           2
 H histidine           1.9          2           1
 I isoleucine          2.9          3           1
 K lysine             14.6         15           3
 L leucine             5.8          6           1
 M methionine          1.0          1           1
 N asparagine          4.9          5           1
 P proline             6.8          7           2
 Q glutamine           1.0          1           1
 R arginine            5.8          6           1
 S serine              6.8          7           2
 T threonine           8.7          9           2
 V valine              4.9          5           1
 W tryptophan          1.9          2           2
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATPase family, AAA domain containing 4 
PRR15                 0.089   proline rich 15 
AHNAK                 0.032   AHNAK nucleoprotein isoform 1 
GLIS3                 0.016   GLIS family zinc finger 3 isoform a 
SDC3                  0.016   syndecan 3 
GLIS3                 0.016   GLIS family zinc finger 3 isoform b 
TTN                   0.016   titin isoform N2-A 
HTR3E                 0.016   5-hydroxytryptamine receptor 3 subunit E 
ADAMTS18              0.016   ADAM metallopeptidase with thrombospondin type 1 mot...
FMNL1                 0.016   formin-like 1 
SCN4A                 0.011   voltage-gated sodium channel type 4 alpha 
MBD6                  0.011   methyl-CpG binding domain protein 6 
EDF1                  0.011   endothelial differentiation-related factor 1 isoform...
EDF1                  0.011   endothelial differentiation-related factor 1 isoform ...
NEUROD2               0.005   neurogenic differentiation 2 
FAM124A               0.005   hypothetical protein LOC220108 
CCDC49                0.005   coiled-coil domain containing 49 
CPE                   0.005   carboxypeptidase E preproprotein 
SUPT6H                0.005   suppressor of Ty 6 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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