CCDC49 36996

Name: CCDC49	Sequence: fasta or formatted (425aa)		NCBI GI: 8923271
Description: coiled-coil domain containing 49		Referenced in: Coiled-Coil Proteins Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.7 20 1 C cysteine 0.2 1 1 D aspartate 3.5 15 1 E glutamate 11.8 50 3 F phenylalanine 1.2 5 1 G glycine 5.6 24 3 H histidine 3.3 14 1 I isoleucine 2.4 10 2 K lysine 13.9 59 5 L leucine 7.8 33 2 M methionine 3.3 14 2 N asparagine 3.8 16 2 P proline 4.0 17 2 Q glutamine 3.8 16 1 R arginine 11.5 49 2 S serine 10.8 46 4 T threonine 2.1 9 1 V valine 3.5 15 1 W tryptophan 0.9 4 1 Y tyrosine 1.9 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 coiled-coil domain containing 49 CIR1 0.074 CBF1 interacting corepressor SFRS12 0.056 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.056 splicing factor, arginine/serine-rich 12 isoform b [... TCHH 0.051 trichohyalin PPIG 0.049 peptidylprolyl isomerase G ZRANB2 0.048 zinc finger protein 265 isoform 1 PRPF4B 0.044 serine/threonine-protein kinase PRP4K SR140 0.044 U2-associated SR140 protein RSRC2 0.043 arginine/serine-rich coiled-coil 2 isoform a SFRS4 0.042 splicing factor, arginine/serine-rich 4 LOC727832 0.042 golgi autoantigen, golgin subfamily a-like SFRS8 0.042 splicing factor, arginine/serine-rich 8 LOC283767 0.042 golgi autoantigen, golgin subfamily a-like LOC283685 0.042 PREDICTED: golgi autoantigen, golgin subfamily a-li... SRRM1 0.042 serine/arginine repetitive matrix 1 RSRC2 0.042 arginine/serine-rich coiled-coil 2 isoform b SFRS11 0.040 splicing factor, arginine/serine-rich 11 SLTM 0.039 modulator of estrogen induced transcription isoform ... SLTM 0.039 modulator of estrogen induced transcription isoform ... SON 0.039 SON DNA-binding protein isoform F SON 0.039 SON DNA-binding protein isoform B SFRS18 0.039 splicing factor, arginine/serine-rich 130 SFRS18 0.039 splicing factor, arginine/serine-rich 130 DDX46 0.039 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 ZRANB2 0.038 zinc finger protein 265 isoform 2 LOC100133599 0.037 PREDICTED: hypothetical protein LOC100286959 0.037 PREDICTED: hypothetical protein XP_002343921 PRPF38B 0.037 PRP38 pre-mRNA processing factor 38 (yeast) domain ... LOC440243 0.037 PREDICTED: Putative golgin subfamily A member 6-lik... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.