Guide to the Human Genome
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Name: CLEC11A Sequence: fasta or formatted (323aa) NCBI GI: 4506803
Description:

stem cell growth factor precursor

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         38           3
 C cysteine            1.9          6           1
 D aspartate           5.0         16           2
 E glutamate          10.5         34           6
 F phenylalanine       2.5          8           2
 G glycine            10.8         35           2
 H histidine           3.4         11           1
 I isoleucine          0.6          2           1
 K lysine              1.2          4           1
 L leucine            11.8         38           2
 M methionine          1.2          4           1
 N asparagine          1.9          6           1
 P proline             6.2         20           1
 Q glutamine           6.5         21           2
 R arginine            8.7         28           2
 S serine              4.0         13           2
 T threonine           3.4         11           1
 V valine              4.0         13           2
 W tryptophan          2.8          9           2
 Y tyrosine            1.9          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   stem cell growth factor precursor 
CLEC3A                0.094   C-type lectin domain family 3 member A 
CLEC3B                0.089   C-type lectin domain family 3, member B 
COLEC11               0.054   collectin sub-family member 11 isoform b 
COLEC11               0.054   collectin sub-family member 11 isoform a 
SFTPD                 0.042   pulmonary surfactant-associated protein D precursor ...
MRC2                  0.037   mannose receptor, C type 2 
COLEC10               0.037   collectin sub-family member 10 
SFTPA2                0.035   surfactant protein A2 
SFTPA1B               0.035   surfactant, pulmonary-associated protein A1B 
SFTPA2B               0.035   surfactant, pulmonary-associated protein A2 
CLEC18A               0.034   secretory protein LOC348174 
CLEC18A               0.034   secretory protein LOC348174 
MBL2                  0.032   soluble mannose-binding lectin precursor 
CLEC18C               0.031   mannose receptor-like 
MRC1                  0.029   mannose receptor C type 1 precursor 
CLEC18B               0.029   C-type lectin domain family 18, member B 
SFTPA1                0.028   surfactant protein A1 
MRC1L1                0.028   mannose receptor, C type 1-like 1 
BCAN                  0.026   brevican isoform 1 
ASGR1                 0.026   asialoglycoprotein receptor 1 
ACAN                  0.026   aggrecan isoform 1 precursor 
ANO8                  0.026   anoctamin 8 
PLA2R1                0.026   phospholipase A2 receptor 1 isoform 2 precursor [Hom...
PLA2R1                0.026   phospholipase A2 receptor 1 isoform 1 precursor [Hom...
RPGR                  0.026   retinitis pigmentosa GTPase regulator isoform C [Hom...
GCC1                  0.026   Golgi coiled-coil protein 1 
LY75                  0.023   lymphocyte antigen 75 
APLP1                 0.022   amyloid precursor-like protein 1 isoform 2 precursor ...
APLP1                 0.022   amyloid precursor-like protein 1 isoform 1 precursor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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