Guide to the Human Genome
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Name: CLEC3A Sequence: fasta or formatted (197aa) NCBI GI: 148728186
Description:

C-type lectin domain family 3 member A

Referenced in:

Lectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         11           1
 C cysteine            3.6          7           1
 D aspartate           6.1         12           1
 E glutamate           5.6         11           1
 F phenylalanine       3.0          6           1
 G glycine             7.1         14           2
 H histidine           2.5          5           1
 I isoleucine          7.1         14           1
 K lysine              9.1         18           2
 L leucine             9.6         19           3
 M methionine          1.0          2           1
 N asparagine          5.6         11           1
 P proline             2.0          4           1
 Q glutamine           4.6          9           1
 R arginine            6.1         12           2
 S serine              6.6         13           2
 T threonine           5.1         10           2
 V valine              6.1         12           1
 W tryptophan          2.0          4           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   C-type lectin domain family 3 member A 
CLEC3B                0.376   C-type lectin domain family 3, member B 
CLEC11A               0.161   stem cell growth factor precursor 
MBL2                  0.137   soluble mannose-binding lectin precursor 
CD209                 0.116   CD209 molecule isoform 7 
CD209                 0.116   CD209 molecule isoform 5 
CD209                 0.111   CD209 molecule isoform 3 
CD209                 0.111   CD209 molecule isoform 6 
CD209                 0.111   CD209 molecule isoform 1 
SFTPD                 0.108   pulmonary surfactant-associated protein D precursor ...
CD209                 0.103   CD209 molecule isoform 8 
COLEC10               0.100   collectin sub-family member 10 
CLEC4M                0.097   C-type lectin domain family 4, member M isoform 7 [...
MRC1                  0.097   mannose receptor C type 1 precursor 
COLEC11               0.097   collectin sub-family member 11 isoform b 
COLEC11               0.097   collectin sub-family member 11 isoform a 
MRC1L1                0.097   mannose receptor, C type 1-like 1 
SFTPA2                0.097   surfactant protein A2 
SFTPA1B               0.097   surfactant, pulmonary-associated protein A1B 
SFTPA2B               0.097   surfactant, pulmonary-associated protein A2 
CLEC4M                0.097   C-type lectin domain family 4, member M isoform 11 ...
NCAN                  0.089   chondroitin sulfate proteoglycan 3 
CLEC10A               0.089   C-type lectin, superfamily member 14 isoform 1 [Homo...
CLEC10A               0.087   C-type lectin, superfamily member 14 isoform 2 [Homo...
CD209                 0.087   CD209 molecule isoform 4 
CLEC4M                0.084   C-type lectin domain family 4, member M isoform 9 [...
CLEC4M                0.084   C-type lectin domain family 4, member M isoform 12 ...
CLEC4M                0.084   C-type lectin domain family 4, member M isoform 2 [...
CLEC4M                0.084   C-type lectin domain family 4, member M isoform 8 [...
CLEC4M                0.084   C-type lectin domain family 4, member M isoform 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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