Guide to the Human Genome
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Search of human proteins with 4503923

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4503923 gastrin preproprotein [Homo sapiens]
         (101 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4503923 gastrin preproprotein [Homo sapiens]                       217   2e-57
gi|4502605 cholecystokinin preproprotein [Homo sapiens]                35   0.017
gi|116292168 KRAB A domain containing 1 [Homo sapiens]                 31   0.24 
gi|148806908 fibronectin type III domain containing 1 [Homo sapi...    29   0.70 
gi|4504465 homeobox B2 [Homo sapiens]                                  29   0.70 
gi|186928852 mitochondrial ribosomal protein S7 [Homo sapiens]         29   0.91 
gi|74272284 membrane associated guanylate kinase, WW and PDZ dom...    29   0.91 
gi|223941923 OTU domain containing 1 [Homo sapiens]                    28   1.2  
gi|20127551 transient receptor potential cation channel, subfami...    28   1.2  
gi|4758666 LATS homolog 1 [Homo sapiens]                               28   1.2  
gi|156119601 spermatogenesis and oogenesis specific basic helix-...    28   1.6  
gi|156119603 spermatogenesis and oogenesis specific basic helix-...    28   1.6  
gi|4826740 growth differentiation factor 10 precursor [Homo sapi...    28   2.0  
gi|154426306 kinesin family member 24 [Homo sapiens]                   28   2.0  
gi|119226260 calcium homeostasis endoplasmic reticulum protein [...    28   2.0  
gi|24308227 zinc finger protein 687 [Homo sapiens]                     28   2.0  
gi|169167231 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|169166924 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|169166352 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot...    27   2.7  
gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]        27   3.5  
gi|5032033 RNA binding motif protein 6 [Homo sapiens]                  27   3.5  
gi|163965366 nascent polypeptide-associated complex alpha subuni...    27   3.5  
gi|238859653 pleckstrin homology domain containing family A memb...    27   4.5  
gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens]    27   4.5  
gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapi...    27   4.5  
gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]     27   4.5  
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                27   4.5  
gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...    27   4.5  
gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...    27   4.5  

>gi|4503923 gastrin preproprotein [Homo sapiens]
          Length = 101

 Score =  217 bits (552), Expect = 2e-57
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MQRLCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQL 60
           MQRLCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQL
Sbjct: 1   MQRLCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQL 60

Query: 61  GPQGPPHLVADPSKKQGPWLEEEEEAYGWMDFGRRSAEDEN 101
           GPQGPPHLVADPSKKQGPWLEEEEEAYGWMDFGRRSAEDEN
Sbjct: 61  GPQGPPHLVADPSKKQGPWLEEEEEAYGWMDFGRRSAEDEN 101


>gi|4502605 cholecystokinin preproprotein [Homo sapiens]
          Length = 115

 Score = 34.7 bits (78), Expect = 0.017
 Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 22/112 (19%)

Query: 4   LCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLE---QQGPASHHRRQL 60
           +C+ VL+  LA  A ++         P  P G+G  R  E P  +    Q      R  L
Sbjct: 5   VCLCVLMAVLAAGALTQPV------PPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHL 58

Query: 61  G-------------PQGPPHLVADPSKKQGPWLEEEEEAYGWMDFGRRSAED 99
           G             P G   +V +           + +  GWMDFGRRSAE+
Sbjct: 59  GALLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEE 110


>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
          Length = 1030

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 25  PRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEE 84
           P SQ    P  + A+R LEL     +  A  H R L PQGPP L   PS+   P L   E
Sbjct: 723 PVSQLEKRPRVSEASRGLELGHGRPRVAAKTHERLL-PQGPPEL---PSESPPPELPPPE 778

Query: 85  EA 86
            A
Sbjct: 779 AA 780


>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
          Length = 1894

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 12   ALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVAD 71
            A A  A   A+  P+ QQ ++P G GA  D       Q+G A+   R   P GP      
Sbjct: 1095 AHAARAKEAAASLPKHQQVESPTGAGAGGDHR----SQRGHAASPARPSRPGGPQSRARV 1150

Query: 72   PSK 74
            PS+
Sbjct: 1151 PSR 1153


>gi|4504465 homeobox B2 [Homo sapiens]
          Length = 356

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 11  FALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQ----GPP 66
           F   L  F  +S K  +  P  P        L+      Q P S  R + GP      PP
Sbjct: 25  FPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPP 84

Query: 67  HLVADPSKKQGPWLEEEEEA 86
            L A P   + PW++E++ A
Sbjct: 85  PLPAAPPAPEFPWMKEKKSA 104


>gi|186928852 mitochondrial ribosomal protein S7 [Homo sapiens]
          Length = 242

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 17/72 (23%), Positives = 30/72 (41%)

Query: 26  RSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEE 85
           R  Q   PL     R L + W+  +     H+R L P+   H + +    QGP ++ + +
Sbjct: 166 RFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHD 225

Query: 86  AYGWMDFGRRSA 97
            +   +  R  A
Sbjct: 226 LHKMAEANRALA 237


>gi|74272284 membrane associated guanylate kinase, WW and PDZ domain
            containing 1 isoform c [Homo sapiens]
          Length = 1462

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 45   PWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLE 81
            P  ++ GPA+      GPQG P + A P ++Q P LE
Sbjct: 1213 PSSDRHGPAT------GPQGVPEVRAGPDRRQHPSLE 1243


>gi|223941923 OTU domain containing 1 [Homo sapiens]
          Length = 481

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 29  QPDAPLGTGANRDLELPWLEQQGPASHHRRQLGP---QGPPHLVADPSKKQGPWLEE--- 82
           +PD P   G +   E P  ++    S HR+ L     +GP      P    GPW EE   
Sbjct: 173 RPDCPEPAGLDATREGP--DRNFRLSEHRQALAAAKHRGPAATPGSPDPGPGPWGEEHLA 230

Query: 83  EEEAYGWMDFGRR 95
           E    GW   G R
Sbjct: 231 ERGPRGWERGGDR 243


>gi|20127551 transient receptor potential cation channel, subfamily
           V, member 2 [Homo sapiens]
          Length = 764

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 6   VYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLE-LPWLEQQGPASHHR 57
           V++  FA+AL + S+ +W+     P+AP G  A   ++ +   E +G  + +R
Sbjct: 544 VFLFGFAVALVSLSQEAWR-----PEAPTGPNATESVQPMEGQEDEGNGAQYR 591


>gi|4758666 LATS homolog 1 [Homo sapiens]
          Length = 1130

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 22  SWKPRS----QQPDAPLGTGANRDLELPWLEQ---QGPASHHRRQL---GPQGPPH-LVA 70
           SW P+     Q    P GT +N  +  P  E    QGP   + + L    P  PP+  ++
Sbjct: 518 SWIPQPIQTVQPSPFPEGTASNVTVMPPVAEAPNYQGPPPPYPKHLLHQNPSVPPYESIS 577

Query: 71  DPSKKQGPWLEEEEEA 86
            PSK+  P L +E+E+
Sbjct: 578 KPSKEDQPSLPKEDES 593


>gi|156119601 spermatogenesis and oogenesis specific basic
           helix-loop-helix 1 isoform b [Homo sapiens]
          Length = 328

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 22  SWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLE 81
           SW P SQQ   P+ +G      L WL Q GP +     LG         +P+K+     +
Sbjct: 243 SWPPFSQQQTLPVMSGE----ALGWLGQAGPLAMGAAPLG---------EPAKEDPMLAQ 289

Query: 82  EEEEAYG 88
           E   A G
Sbjct: 290 EAGSALG 296


>gi|156119603 spermatogenesis and oogenesis specific basic
           helix-loop-helix 1 isoform a [Homo sapiens]
          Length = 387

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 13/67 (19%)

Query: 22  SWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLE 81
           SW P SQQ   P+ +G      L WL Q GP +     LG         +P+K+     +
Sbjct: 243 SWPPFSQQQTLPVMSGE----ALGWLGQAGPLAMGAAPLG---------EPAKEDPMLAQ 289

Query: 82  EEEEAYG 88
           E   A G
Sbjct: 290 EAGSALG 296


>gi|4826740 growth differentiation factor 10 precursor [Homo
           sapiens]
          Length = 478

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 32  APLGTGANRDLELPWLEQQGPASH----HRRQLGPQGPPHLVADPSKK 75
           A   TG  +D ELP L+++ P +H    H+ QL P     L   P +K
Sbjct: 291 AAQATGPLQDNELPGLDERPPRAHAQHFHKHQLWPSPFRALKPRPGRK 338


>gi|154426306 kinesin family member 24 [Homo sapiens]
          Length = 1368

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 36  TGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEEAYG 88
           TG  +DL   W++ + P +H R  L           PSK    W  E   + G
Sbjct: 882 TGDKKDLTKSWVDSRDPINHRRAALDHS------CSPSKGPVDWSRENSTSSG 928


>gi|119226260 calcium homeostasis endoplasmic reticulum protein
           [Homo sapiens]
          Length = 916

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 17/88 (19%)

Query: 28  QQPDA--PLGTGANRDL---ELPWLEQQGPASHHRRQLGPQ---------GPPHLVADPS 73
           Q P A  P G G +  +   + PW +Q  P +   +Q  P+         GPPH     +
Sbjct: 398 QDPAAAGPRGPGPHDQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNN 457

Query: 74  KKQGPWLEEEEEAYGWMDFGRRSAEDEN 101
             +G W E+  +  GW   G+R A   N
Sbjct: 458 SHEGMWGEQRGDP-GWN--GQRDAPWNN 482


>gi|24308227 zinc finger protein 687 [Homo sapiens]
          Length = 1237

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%)

Query: 28  QQPDAPLGTGANRDLELPWLEQQGPASHHRRQLG---PQ----GPPHLVADPSKKQGPWL 80
           +Q +A  G  A    +   + ++GP   HR Q G   P+    G PH  A PS   G W 
Sbjct: 93  EQSEALAGGSAGDGAQAAGVTKEGPVGPHRMQNGFGSPEPSLPGTPHSPAPPS--GGTWK 150

Query: 81  EEEEE 85
           E+  E
Sbjct: 151 EKGME 155


>gi|169167231 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 31  DAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPS 73
           D+  G  A  DLE+ W  Q      HR +L PQ P    ++PS
Sbjct: 72  DSGPGRAAGEDLEI-WYRQPFVCLPHRYKLAPQRPGSRRSNPS 113


>gi|169166924 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 31  DAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPS 73
           D+  G  A  DLE+ W  Q      HR +L PQ P    ++PS
Sbjct: 72  DSGPGRAAGEDLEI-WYRQPFVCLPHRYKLAPQRPGSRRSNPS 113


>gi|169166352 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 140

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 31  DAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPS 73
           D+  G  A  DLE+ W  Q      HR +L PQ P    ++PS
Sbjct: 72  DSGPGRAAGEDLEI-WYRQPFVCLPHRYKLAPQRPGSRRSNPS 113


>gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7
            preproprotein [Homo sapiens]
          Length = 1686

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 25   PRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGP 78
            P SQ  D P+G  +   L  PW ++         +   +G PHL   PS    P
Sbjct: 1190 PESQN-DFPVGKDSQSQLPPPWRDRTNEVFKDDEEPKGRGAPHLPPRPSSTLPP 1242


>gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens]
          Length = 466

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)

Query: 61  GPQGPPHLVADPSKKQ 76
           GPQGPPH    PS  Q
Sbjct: 362 GPQGPPHYTDQPSTSQ 377


>gi|5032033 RNA binding motif protein 6 [Homo sapiens]
          Length = 1123

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 11/79 (13%)

Query: 25  PRSQQPDAPLGTGANRDLELPWLEQQGPAS---HHRRQLGPQGPPHLVADPSKKQGPWLE 81
           P  +QP+ PL   A+++ E P   ++G  S   H +R+     PP      S+++GP   
Sbjct: 586 PLEKQPNQPLRP-ADKEPE-PRKREEGQESRLGHQKREAERYLPP------SRREGPTFR 637

Query: 82  EEEEAYGWMDFGRRSAEDE 100
            + E   W    R+  E +
Sbjct: 638 RDRERESWSGETRQDGESK 656


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 13   LALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADP 72
            L  AAF +   KP S    A +    +  + LP      P    ++Q  P  P  ++  P
Sbjct: 1773 LTAAAFEKVLPKPES----ASVSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVLESP 1828

Query: 73   SKKQGPWLEEE 83
            SK   P  E+E
Sbjct: 1829 SKPLAPADEDE 1839


>gi|238859653 pleckstrin homology domain containing family A member
           4 isoform 2 [Homo sapiens]
          Length = 583

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 33  PLGTGANRD-LELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLE 81
           PL  G  R  L  P   ++GP S       P+ P H   +P  + GP LE
Sbjct: 281 PLDWGPQRQTLSRPPTPRRGPPSEAGGGKPPRSPQHWSQEPRTQPGPPLE 330


>gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens]
          Length = 771

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 25  PRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEE 84
           P+ Q+P      G+ RD + P     GP          QGPP  V  P+ + G   E E+
Sbjct: 662 PQCQRPH-----GSGRDDKRPPPPYPGPGKPAAAAAWIQGPPEGVETPTDQGGQAAEREQ 716

Query: 85  E 85
           +
Sbjct: 717 Q 717


>gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo
           sapiens]
          Length = 974

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 25  PRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEE 84
           P+ Q+P      G+ RD + P     GP          QGPP  V  P+ + G   E E+
Sbjct: 865 PQCQRPH-----GSGRDDKRPPPPYPGPGKPAAAAAWIQGPPEGVETPTDQGGQAAEREQ 919

Query: 85  E 85
           +
Sbjct: 920 Q 920


>gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]
          Length = 393

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 13/76 (17%)

Query: 2   QRLCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLG 61
           +R CV  L  A AL ++     +  SQ P  P  +GA R                R  LG
Sbjct: 166 RRGCVQALALAFALRSWRPPGTEVTSQGPRQPSSSGAKR-------------RRLRAALG 212

Query: 62  PQGPPHLVADPSKKQG 77
           PQ     +  PS   G
Sbjct: 213 PQPTRSALRFPSASPG 228


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)

Query: 61  GPQGPPHLVADPSKKQGPWLEEEEEAYG 88
           GPQGPP L   P +   P L+ E    G
Sbjct: 569 GPQGPPGLPGPPGRVGAPGLQGERGEKG 596


>gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2
           [Homo sapiens]
          Length = 881

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  QQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEEA 86
           QQG      +Q GP GP        +KQ P  EEEEEA
Sbjct: 605 QQGQQGRQEQQEGPVGPAPSRPALQEKQ-PEKEEEEEA 641


>gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1
           [Homo sapiens]
          Length = 882

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 49  QQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEEA 86
           QQG      +Q GP GP        +KQ P  EEEEEA
Sbjct: 605 QQGQQGRQEQQEGPVGPAPSRPALQEKQ-PEKEEEEEA 641


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.134    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,212,329
Number of Sequences: 37866
Number of extensions: 268514
Number of successful extensions: 1101
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1047
Number of HSP's gapped (non-prelim): 111
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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