BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4503923 gastrin preproprotein [Homo sapiens] (101 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4503923 gastrin preproprotein [Homo sapiens] 217 2e-57 gi|4502605 cholecystokinin preproprotein [Homo sapiens] 35 0.017 gi|116292168 KRAB A domain containing 1 [Homo sapiens] 31 0.24 gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 29 0.70 gi|4504465 homeobox B2 [Homo sapiens] 29 0.70 gi|186928852 mitochondrial ribosomal protein S7 [Homo sapiens] 29 0.91 gi|74272284 membrane associated guanylate kinase, WW and PDZ dom... 29 0.91 gi|223941923 OTU domain containing 1 [Homo sapiens] 28 1.2 gi|20127551 transient receptor potential cation channel, subfami... 28 1.2 gi|4758666 LATS homolog 1 [Homo sapiens] 28 1.2 gi|156119601 spermatogenesis and oogenesis specific basic helix-... 28 1.6 gi|156119603 spermatogenesis and oogenesis specific basic helix-... 28 1.6 gi|4826740 growth differentiation factor 10 precursor [Homo sapi... 28 2.0 gi|154426306 kinesin family member 24 [Homo sapiens] 28 2.0 gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 28 2.0 gi|24308227 zinc finger protein 687 [Homo sapiens] 28 2.0 gi|169167231 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7 gi|169166924 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7 gi|169166352 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7 gi|38683827 ADAM metallopeptidase with thrombospondin type 1 mot... 27 2.7 gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] 27 3.5 gi|5032033 RNA binding motif protein 6 [Homo sapiens] 27 3.5 gi|163965366 nascent polypeptide-associated complex alpha subuni... 27 3.5 gi|238859653 pleckstrin homology domain containing family A memb... 27 4.5 gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens] 27 4.5 gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapi... 27 4.5 gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens] 27 4.5 gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 27 4.5 gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ... 27 4.5 gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1... 27 4.5 >gi|4503923 gastrin preproprotein [Homo sapiens] Length = 101 Score = 217 bits (552), Expect = 2e-57 Identities = 101/101 (100%), Positives = 101/101 (100%) Query: 1 MQRLCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQL 60 MQRLCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQL Sbjct: 1 MQRLCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQL 60 Query: 61 GPQGPPHLVADPSKKQGPWLEEEEEAYGWMDFGRRSAEDEN 101 GPQGPPHLVADPSKKQGPWLEEEEEAYGWMDFGRRSAEDEN Sbjct: 61 GPQGPPHLVADPSKKQGPWLEEEEEAYGWMDFGRRSAEDEN 101 >gi|4502605 cholecystokinin preproprotein [Homo sapiens] Length = 115 Score = 34.7 bits (78), Expect = 0.017 Identities = 31/112 (27%), Positives = 43/112 (38%), Gaps = 22/112 (19%) Query: 4 LCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLE---QQGPASHHRRQL 60 +C+ VL+ LA A ++ P P G+G R E P + Q R L Sbjct: 5 VCLCVLMAVLAAGALTQPV------PPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHL 58 Query: 61 G-------------PQGPPHLVADPSKKQGPWLEEEEEAYGWMDFGRRSAED 99 G P G +V + + + GWMDFGRRSAE+ Sbjct: 59 GALLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEE 110 >gi|116292168 KRAB A domain containing 1 [Homo sapiens] Length = 1030 Score = 30.8 bits (68), Expect = 0.24 Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 4/62 (6%) Query: 25 PRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEE 84 P SQ P + A+R LEL + A H R L PQGPP L PS+ P L E Sbjct: 723 PVSQLEKRPRVSEASRGLELGHGRPRVAAKTHERLL-PQGPPEL---PSESPPPELPPPE 778 Query: 85 EA 86 A Sbjct: 779 AA 780 >gi|148806908 fibronectin type III domain containing 1 [Homo sapiens] Length = 1894 Score = 29.3 bits (64), Expect = 0.70 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 12 ALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVAD 71 A A A A+ P+ QQ ++P G GA D Q+G A+ R P GP Sbjct: 1095 AHAARAKEAAASLPKHQQVESPTGAGAGGDHR----SQRGHAASPARPSRPGGPQSRARV 1150 Query: 72 PSK 74 PS+ Sbjct: 1151 PSR 1153 >gi|4504465 homeobox B2 [Homo sapiens] Length = 356 Score = 29.3 bits (64), Expect = 0.70 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 11 FALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQ----GPP 66 F L F +S K + P P L+ Q P S R + GP PP Sbjct: 25 FPAVLETFQTSSIKESTLIPPPPPFEQTFPSLQPGASTLQRPRSQKRAEDGPALPPPPPP 84 Query: 67 HLVADPSKKQGPWLEEEEEA 86 L A P + PW++E++ A Sbjct: 85 PLPAAPPAPEFPWMKEKKSA 104 >gi|186928852 mitochondrial ribosomal protein S7 [Homo sapiens] Length = 242 Score = 28.9 bits (63), Expect = 0.91 Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 26 RSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEE 85 R Q PL R L + W+ + H+R L P+ H + + QGP ++ + + Sbjct: 166 RFYQVPVPLPDRRRRFLAMKWMITECRDKKHQRTLMPEKLSHKLLEAFHNQGPVIKRKHD 225 Query: 86 AYGWMDFGRRSA 97 + + R A Sbjct: 226 LHKMAEANRALA 237 >gi|74272284 membrane associated guanylate kinase, WW and PDZ domain containing 1 isoform c [Homo sapiens] Length = 1462 Score = 28.9 bits (63), Expect = 0.91 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%) Query: 45 PWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLE 81 P ++ GPA+ GPQG P + A P ++Q P LE Sbjct: 1213 PSSDRHGPAT------GPQGVPEVRAGPDRRQHPSLE 1243 >gi|223941923 OTU domain containing 1 [Homo sapiens] Length = 481 Score = 28.5 bits (62), Expect = 1.2 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 29 QPDAPLGTGANRDLELPWLEQQGPASHHRRQLGP---QGPPHLVADPSKKQGPWLEE--- 82 +PD P G + E P ++ S HR+ L +GP P GPW EE Sbjct: 173 RPDCPEPAGLDATREGP--DRNFRLSEHRQALAAAKHRGPAATPGSPDPGPGPWGEEHLA 230 Query: 83 EEEAYGWMDFGRR 95 E GW G R Sbjct: 231 ERGPRGWERGGDR 243 >gi|20127551 transient receptor potential cation channel, subfamily V, member 2 [Homo sapiens] Length = 764 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%) Query: 6 VYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLE-LPWLEQQGPASHHR 57 V++ FA+AL + S+ +W+ P+AP G A ++ + E +G + +R Sbjct: 544 VFLFGFAVALVSLSQEAWR-----PEAPTGPNATESVQPMEGQEDEGNGAQYR 591 >gi|4758666 LATS homolog 1 [Homo sapiens] Length = 1130 Score = 28.5 bits (62), Expect = 1.2 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 11/76 (14%) Query: 22 SWKPRS----QQPDAPLGTGANRDLELPWLEQ---QGPASHHRRQL---GPQGPPH-LVA 70 SW P+ Q P GT +N + P E QGP + + L P PP+ ++ Sbjct: 518 SWIPQPIQTVQPSPFPEGTASNVTVMPPVAEAPNYQGPPPPYPKHLLHQNPSVPPYESIS 577 Query: 71 DPSKKQGPWLEEEEEA 86 PSK+ P L +E+E+ Sbjct: 578 KPSKEDQPSLPKEDES 593 >gi|156119601 spermatogenesis and oogenesis specific basic helix-loop-helix 1 isoform b [Homo sapiens] Length = 328 Score = 28.1 bits (61), Expect = 1.6 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 13/67 (19%) Query: 22 SWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLE 81 SW P SQQ P+ +G L WL Q GP + LG +P+K+ + Sbjct: 243 SWPPFSQQQTLPVMSGE----ALGWLGQAGPLAMGAAPLG---------EPAKEDPMLAQ 289 Query: 82 EEEEAYG 88 E A G Sbjct: 290 EAGSALG 296 >gi|156119603 spermatogenesis and oogenesis specific basic helix-loop-helix 1 isoform a [Homo sapiens] Length = 387 Score = 28.1 bits (61), Expect = 1.6 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 13/67 (19%) Query: 22 SWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLE 81 SW P SQQ P+ +G L WL Q GP + LG +P+K+ + Sbjct: 243 SWPPFSQQQTLPVMSGE----ALGWLGQAGPLAMGAAPLG---------EPAKEDPMLAQ 289 Query: 82 EEEEAYG 88 E A G Sbjct: 290 EAGSALG 296 >gi|4826740 growth differentiation factor 10 precursor [Homo sapiens] Length = 478 Score = 27.7 bits (60), Expect = 2.0 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Query: 32 APLGTGANRDLELPWLEQQGPASH----HRRQLGPQGPPHLVADPSKK 75 A TG +D ELP L+++ P +H H+ QL P L P +K Sbjct: 291 AAQATGPLQDNELPGLDERPPRAHAQHFHKHQLWPSPFRALKPRPGRK 338 >gi|154426306 kinesin family member 24 [Homo sapiens] Length = 1368 Score = 27.7 bits (60), Expect = 2.0 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 36 TGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEEAYG 88 TG +DL W++ + P +H R L PSK W E + G Sbjct: 882 TGDKKDLTKSWVDSRDPINHRRAALDHS------CSPSKGPVDWSRENSTSSG 928 >gi|119226260 calcium homeostasis endoplasmic reticulum protein [Homo sapiens] Length = 916 Score = 27.7 bits (60), Expect = 2.0 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 17/88 (19%) Query: 28 QQPDA--PLGTGANRDL---ELPWLEQQGPASHHRRQLGPQ---------GPPHLVADPS 73 Q P A P G G + + + PW +Q P + +Q P+ GPPH + Sbjct: 398 QDPAAAGPRGPGPHDQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNN 457 Query: 74 KKQGPWLEEEEEAYGWMDFGRRSAEDEN 101 +G W E+ + GW G+R A N Sbjct: 458 SHEGMWGEQRGDP-GWN--GQRDAPWNN 482 >gi|24308227 zinc finger protein 687 [Homo sapiens] Length = 1237 Score = 27.7 bits (60), Expect = 2.0 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 9/65 (13%) Query: 28 QQPDAPLGTGANRDLELPWLEQQGPASHHRRQLG---PQ----GPPHLVADPSKKQGPWL 80 +Q +A G A + + ++GP HR Q G P+ G PH A PS G W Sbjct: 93 EQSEALAGGSAGDGAQAAGVTKEGPVGPHRMQNGFGSPEPSLPGTPHSPAPPS--GGTWK 150 Query: 81 EEEEE 85 E+ E Sbjct: 151 EKGME 155 >gi|169167231 PREDICTED: hypothetical protein [Homo sapiens] Length = 140 Score = 27.3 bits (59), Expect = 2.7 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 31 DAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPS 73 D+ G A DLE+ W Q HR +L PQ P ++PS Sbjct: 72 DSGPGRAAGEDLEI-WYRQPFVCLPHRYKLAPQRPGSRRSNPS 113 >gi|169166924 PREDICTED: hypothetical protein [Homo sapiens] Length = 140 Score = 27.3 bits (59), Expect = 2.7 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 31 DAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPS 73 D+ G A DLE+ W Q HR +L PQ P ++PS Sbjct: 72 DSGPGRAAGEDLEI-WYRQPFVCLPHRYKLAPQRPGSRRSNPS 113 >gi|169166352 PREDICTED: hypothetical protein [Homo sapiens] Length = 140 Score = 27.3 bits (59), Expect = 2.7 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Query: 31 DAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPS 73 D+ G A DLE+ W Q HR +L PQ P ++PS Sbjct: 72 DSGPGRAAGEDLEI-WYRQPFVCLPHRYKLAPQRPGSRRSNPS 113 >gi|38683827 ADAM metallopeptidase with thrombospondin type 1 motif, 7 preproprotein [Homo sapiens] Length = 1686 Score = 27.3 bits (59), Expect = 2.7 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 25 PRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGP 78 P SQ D P+G + L PW ++ + +G PHL PS P Sbjct: 1190 PESQN-DFPVGKDSQSQLPPPWRDRTNEVFKDDEEPKGRGAPHLPPRPSSTLPP 1242 >gi|5902104 SRY (sex determining region Y)-box 10 [Homo sapiens] Length = 466 Score = 26.9 bits (58), Expect = 3.5 Identities = 10/16 (62%), Positives = 10/16 (62%) Query: 61 GPQGPPHLVADPSKKQ 76 GPQGPPH PS Q Sbjct: 362 GPQGPPHYTDQPSTSQ 377 >gi|5032033 RNA binding motif protein 6 [Homo sapiens] Length = 1123 Score = 26.9 bits (58), Expect = 3.5 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 11/79 (13%) Query: 25 PRSQQPDAPLGTGANRDLELPWLEQQGPAS---HHRRQLGPQGPPHLVADPSKKQGPWLE 81 P +QP+ PL A+++ E P ++G S H +R+ PP S+++GP Sbjct: 586 PLEKQPNQPLRP-ADKEPE-PRKREEGQESRLGHQKREAERYLPP------SRREGPTFR 637 Query: 82 EEEEAYGWMDFGRRSAEDE 100 + E W R+ E + Sbjct: 638 RDRERESWSGETRQDGESK 656 >gi|163965366 nascent polypeptide-associated complex alpha subunit isoform a [Homo sapiens] Length = 2078 Score = 26.9 bits (58), Expect = 3.5 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 13 LALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADP 72 L AAF + KP S A + + + LP P ++Q P P ++ P Sbjct: 1773 LTAAAFEKVLPKPES----ASVSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSPGLVLESP 1828 Query: 73 SKKQGPWLEEE 83 SK P E+E Sbjct: 1829 SKPLAPADEDE 1839 >gi|238859653 pleckstrin homology domain containing family A member 4 isoform 2 [Homo sapiens] Length = 583 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 33 PLGTGANRD-LELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLE 81 PL G R L P ++GP S P+ P H +P + GP LE Sbjct: 281 PLDWGPQRQTLSRPPTPRRGPPSEAGGGKPPRSPQHWSQEPRTQPGPPLE 330 >gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens] Length = 771 Score = 26.6 bits (57), Expect = 4.5 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 25 PRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEE 84 P+ Q+P G+ RD + P GP QGPP V P+ + G E E+ Sbjct: 662 PQCQRPH-----GSGRDDKRPPPPYPGPGKPAAAAAWIQGPPEGVETPTDQGGQAAEREQ 716 Query: 85 E 85 + Sbjct: 717 Q 717 >gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapiens] Length = 974 Score = 26.6 bits (57), Expect = 4.5 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%) Query: 25 PRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEE 84 P+ Q+P G+ RD + P GP QGPP V P+ + G E E+ Sbjct: 865 PQCQRPH-----GSGRDDKRPPPPYPGPGKPAAAAAWIQGPPEGVETPTDQGGQAAEREQ 919 Query: 85 E 85 + Sbjct: 920 Q 920 >gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens] Length = 393 Score = 26.6 bits (57), Expect = 4.5 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 13/76 (17%) Query: 2 QRLCVYVLIFALALAAFSEASWKPRSQQPDAPLGTGANRDLELPWLEQQGPASHHRRQLG 61 +R CV L A AL ++ + SQ P P +GA R R LG Sbjct: 166 RRGCVQALALAFALRSWRPPGTEVTSQGPRQPSSSGAKR-------------RRLRAALG 212 Query: 62 PQGPPHLVADPSKKQG 77 PQ + PS G Sbjct: 213 PQPTRSALRFPSASPG 228 >gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] Length = 1626 Score = 26.6 bits (57), Expect = 4.5 Identities = 12/28 (42%), Positives = 14/28 (50%) Query: 61 GPQGPPHLVADPSKKQGPWLEEEEEAYG 88 GPQGPP L P + P L+ E G Sbjct: 569 GPQGPPGLPGPPGRVGAPGLQGERGEKG 596 >gi|51094101 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 [Homo sapiens] Length = 881 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 49 QQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEEA 86 QQG +Q GP GP +KQ P EEEEEA Sbjct: 605 QQGQQGRQEQQEGPVGPAPSRPALQEKQ-PEKEEEEEA 641 >gi|164419743 DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1 [Homo sapiens] Length = 882 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Query: 49 QQGPASHHRRQLGPQGPPHLVADPSKKQGPWLEEEEEA 86 QQG +Q GP GP +KQ P EEEEEA Sbjct: 605 QQGQQGRQEQQEGPVGPAPSRPALQEKQ-PEKEEEEEA 641 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.315 0.134 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,212,329 Number of Sequences: 37866 Number of extensions: 268514 Number of successful extensions: 1101 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 54 Number of HSP's that attempted gapping in prelim test: 1047 Number of HSP's gapped (non-prelim): 111 length of query: 101 length of database: 18,247,518 effective HSP length: 72 effective length of query: 29 effective length of database: 15,521,166 effective search space: 450113814 effective search space used: 450113814 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.