Guide to the Human Genome
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Name: RBM6 Sequence: fasta or formatted (1123aa) NCBI GI: 5032033
Description:

RNA binding motif protein 6

Referenced in:

RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         45           1
 C cysteine            1.0         11           1
 D aspartate           9.1        102           1
 E glutamate           9.1        102           7
 F phenylalanine       4.1         46           1
 G glycine             9.1        102           3
 H histidine           2.6         29           1
 I isoleucine          2.5         28           2
 K lysine              6.0         67           2
 L leucine             5.3         59           2
 M methionine          1.8         20           1
 N asparagine          2.9         33           1
 P proline             6.8         76           4
 Q glutamine           5.3         60           2
 R arginine           10.4        117           2
 S serine              8.0         90           3
 T threonine           4.5         50           2
 V valine              3.4         38           2
 W tryptophan          0.6          7           1
 Y tyrosine            3.7         41           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein 6 
RBM5                  0.086   RNA binding motif protein 5 
RBM10                 0.073   RNA binding motif protein 10 isoform 1 
RBM10                 0.073   RNA binding motif protein 10 isoform 2 
ABCF1                 0.014   ATP-binding cassette, sub-family F, member 1 isoform...
TCHH                  0.012   trichohyalin 
BAT2D1                0.012   HBxAg transactivated protein 2 
ABCF1                 0.011   ATP-binding cassette, sub-family F, member 1 isoform...
EIF3A                 0.010   eukaryotic translation initiation factor 3, subunit 1...
NEFH                  0.010   neurofilament, heavy polypeptide 200kDa 
MAP1B                 0.010   microtubule-associated protein 1B 
HIRIP3                0.010   HIRA interacting protein 3 
EIF5B                 0.010   eukaryotic translation initiation factor 5B 
CSTF2                 0.009   cleavage stimulation factor subunit 2 
CHD7                  0.009   chromodomain helicase DNA binding protein 7 
SLC24A1               0.009   solute carrier family 24 (sodium/potassium/calcium ex...
THOC2                 0.009   THO complex 2 
RBM8A                 0.009   RNA binding motif protein 8A 
RPTN                  0.009   repetin 
PDE3A                 0.009   phosphodiesterase 3A 
LOC100133599          0.009   PREDICTED: hypothetical protein 
LOC100133758          0.009   PREDICTED: hypothetical protein, partial 
LOC100133599          0.008   PREDICTED: hypothetical protein 
DDX23                 0.008   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
ZC3H13                0.008   zinc finger CCCH-type containing 13 
SFRS12                0.008   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.008   splicing factor, arginine/serine-rich 12 isoform b [...
SRRT                  0.008   arsenate resistance protein 2 isoform e 
SRRT                  0.008   arsenate resistance protein 2 isoform c 
NUCKS1                0.008   nuclear casein kinase and cyclin-dependent kinase su...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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