Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TP53I13 Sequence: fasta or formatted (393aa) NCBI GI: 114431216
Description:

tumor protein p53 inducible protein 13

Referenced in:

p53 Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.5         53           3
 C cysteine            2.3          9           1
 D aspartate           1.5          6           1
 E glutamate           4.6         18           2
 F phenylalanine       1.5          6           1
 G glycine             7.1         28           2
 H histidine           1.3          5           1
 I isoleucine          0.8          3           1
 K lysine              2.5         10           3
 L leucine            11.7         46           4
 M methionine          1.8          7           1
 N asparagine          1.3          5           1
 P proline            13.0         51           4
 Q glutamine           4.1         16           1
 R arginine           10.4         41           5
 S serine              9.2         36           3
 T threonine           5.3         21           1
 V valine              4.3         17           1
 W tryptophan          2.5         10           1
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor protein p53 inducible protein 13 
FLJ22184              0.023   PREDICTED: hypothetical protein LOC80164 
BCAN                  0.023   brevican isoform 2 
FOXD1                 0.022   forkhead box D1 
TMPRSS13              0.022   transmembrane protease, serine 13 
CASKIN1               0.021   CASK interacting protein 1 
SALL3                 0.021   sal-like 3 
LOC100292122          0.021   PREDICTED: hypothetical protein XP_002345138 
LOC100133756          0.019   PREDICTED: hypothetical protein, partial 
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
TAF4                  0.019   TBP-associated factor 4 
COL2A1                0.018   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.018   collagen, type II, alpha 1 isoform 2 precursor [Hom...
AGAP2                 0.018   centaurin, gamma 1 isoform PIKE-L 
LOC100291609          0.018   PREDICTED: hypothetical protein XP_002346061 
LOC100286986          0.018   PREDICTED: hypothetical protein XP_002344191 
KIF26A                0.018   kinesin family member 26A 
LOC100134365          0.017   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
MAP1S                 0.017   BPY2 interacting protein 1 
PRR18                 0.017   proline rich region 18 
ANKRD36               0.017   PREDICTED: ankyrin repeat domain 36 
MUC4                  0.017   mucin 4 isoform a 
COL1A2                0.015   alpha 2 type I collagen 
LOC100293055          0.015   PREDICTED: similar to COL22A1 protein 
ZNF469                0.015   zinc finger protein 469 
TBC1D10B              0.015   TBC1 domain family, member 10B 
PRB1                  0.015   proline-rich protein BstNI subfamily 1 isoform 2 pre...
COL22A1               0.015   collagen, type XXII, alpha 1 
BIN2                  0.015   bridging integrator 2 
LOC652586             0.015   PREDICTED: similar to facioscapulohumeral muscular ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press