Guide to the Human Genome
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Name: LOC100128186 Sequence: fasta or formatted (140aa) NCBI GI: 169167231
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {140aa} PREDICTED: hypothetical protein
alt mRNA {140aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4          9           2
 C cysteine            3.6          5           1
 D aspartate           3.6          5           2
 E glutamate           6.4          9           2
 F phenylalanine       2.1          3           1
 G glycine             6.4          9           1
 H histidine           2.9          4           1
 I isoleucine          7.1         10           2
 K lysine              3.6          5           1
 L leucine             7.9         11           1
 M methionine          1.4          2           1
 N asparagine          3.6          5           1
 P proline             8.6         12           1
 Q glutamine           7.9         11           1
 R arginine            7.1         10           2
 S serine              9.3         13           1
 T threonine           2.9          4           1
 V valine              4.3          6           1
 W tryptophan          2.9          4           1
 Y tyrosine            2.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128186          1.000   PREDICTED: hypothetical protein 
LOC100128186          1.000   PREDICTED: hypothetical protein 
AUTS2                 0.018   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.018   autism susceptibility candidate 2 isoform 1 
NEUROG2               0.015   neurogenin 2 
NR2F1                 0.011   nuclear receptor subfamily 2, group F, member 1 [Homo...
DMWD                  0.011   dystrophia myotonica-containing WD repeat motif prot...
LOC100131973          0.011   PREDICTED: hypothetical protein 
LOC100131973          0.011   PREDICTED: hypothetical protein 
GAST                  0.007   gastrin preproprotein 
LOC100289979          0.007   PREDICTED: hypothetical protein XP_002346878 
LOC100289273          0.007   PREDICTED: hypothetical protein XP_002342720 
IL28RA                0.007   interleukin 28 receptor, alpha isoform 1 
IL28RA                0.007   interleukin 28 receptor, alpha isoform 2 
C14orf179             0.007   hypothetical protein LOC112752 isoform 1 
TOX                   0.004   thymus high mobility group box protein TOX 
CPT2                  0.004   carnitine O-palmitoyltransferase precursor 
MOG                   0.004   myelin oligodendrocyte glycoprotein isoform beta4 pr...
MOG                   0.004   myelin oligodendrocyte glycoprotein isoform alpha4 p...
MOG                   0.004   myelin oligodendrocyte glycoprotein isoform beta5 pr...
MOG                   0.004   myelin oligodendrocyte glycoprotein isoform beta2 pr...
MOG                   0.004   myelin oligodendrocyte glycoprotein isoform alpha3 p...
MOG                   0.004   myelin oligodendrocyte glycoprotein isoform beta3 pr...
MOG                   0.004   myelin oligodendrocyte glycoprotein isoform beta1 pr...
MOG                   0.004   myelin oligodendrocyte glycoprotein isoform alpha2 p...
MOG                   0.004   myelin oligodendrocyte glycoprotein isoform alpha1 p...
ZZZ3                  0.004   zinc finger, ZZ-type containing 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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