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Search of human proteins with 38150007
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 508 e-144
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof... 481 e-136
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 481 e-136
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ... 481 e-136
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ... 481 e-136
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ... 481 e-136
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s... 481 e-136
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens] 234 5e-62
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens] 234 5e-62
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens] 234 5e-62
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 80 2e-15
gi|7706501 WW domain binding protein 11 [Homo sapiens] 75 4e-14
gi|160707881 formin 2 [Homo sapiens] 73 3e-13
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 73 3e-13
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 72 3e-13
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 70 1e-12
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 70 1e-12
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 70 1e-12
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 70 1e-12
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 70 2e-12
gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 70 2e-12
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 70 2e-12
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 70 2e-12
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 70 2e-12
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 69 3e-12
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 69 3e-12
gi|157168329 formin 1 [Homo sapiens] 69 4e-12
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 69 4e-12
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 69 4e-12
gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo s... 69 4e-12
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 508 bits (1307), Expect = e-144
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP
Sbjct: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
B [Homo sapiens]
Length = 231
Score = 481 bits (1237), Expect = e-136
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG
Sbjct: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 481 bits (1237), Expect = e-136
Identities = 223/240 (92%), Positives = 233/240 (97%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RGPPPPGMRPPRP
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 481 bits (1237), Expect = e-136
Identities = 223/240 (92%), Positives = 233/240 (97%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RGPPPPGMRPPRP
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 481 bits (1237), Expect = e-136
Identities = 223/240 (92%), Positives = 233/240 (97%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RGPPPPGMRPPRP
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 481 bits (1237), Expect = e-136
Identities = 223/240 (92%), Positives = 233/240 (97%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RGPPPPGMRPPRP
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 481 bits (1237), Expect = e-136
Identities = 223/240 (92%), Positives = 233/240 (97%)
Query: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKN+KQ E
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPG+GRAAGRG+PAGVP+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAA AATASIAGAPTQYPPGRG PPPP+G
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVG 180
Query: 181 RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
R PPPG+M PPPGMRPPMGPP+G+PP RGTP+GMPPPGMRPPPPG+RGPPPPGMRPPRP
Sbjct: 181 RATPPPGIMAPPPGMRPPMGPPIGLPPARGTPIGMPPPGMRPPPPGIRGPPPPGMRPPRP 240
>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 234 bits (597), Expect = 5e-62
Identities = 114/141 (80%), Positives = 123/141 (87%)
Query: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQ E EEK
Sbjct: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
Query: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG 126
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPG+ RAAGRG+ AGVP+PQAP G
Sbjct: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
Query: 127 LAGPVRGVGGPSQQVMTPQGR 147
LAGPV GVGGPSQQVMTPQ R
Sbjct: 272 LAGPVPGVGGPSQQVMTPQRR 292
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 200 GPPMGIPPGRGTPMGMP----PPGMRPPPPGMRGPPPPGMRPPR 239
GP + GRG G+P P G+ P PG+ GP M P R
Sbjct: 248 GPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQR 291
>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 234 bits (597), Expect = 5e-62
Identities = 114/141 (80%), Positives = 123/141 (87%)
Query: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQ E EEK
Sbjct: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
Query: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG 126
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPG+ RAAGRG+ AGVP+PQAP G
Sbjct: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
Query: 127 LAGPVRGVGGPSQQVMTPQGR 147
LAGPV GVGGPSQQVMTPQ R
Sbjct: 272 LAGPVPGVGGPSQQVMTPQRR 292
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 200 GPPMGIPPGRGTPMGMP----PPGMRPPPPGMRGPPPPGMRPPR 239
GP + GRG G+P P G+ P PG+ GP M P R
Sbjct: 248 GPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQR 291
>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
Length = 318
Score = 234 bits (597), Expect = 5e-62
Identities = 114/141 (80%), Positives = 123/141 (87%)
Query: 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 66
+++ QHIDYRM+CILQ+G IF G FKAFDKH+NLILCDCDEFRKIKPKN KQ E EEK
Sbjct: 152 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHF 211
Query: 67 LGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAG 126
GLVLL GENLVSMTVEG PPK TGIARVPLAGAAGGPG+ RAAGRG+ AGVP+PQAP G
Sbjct: 212 WGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQAPGG 271
Query: 127 LAGPVRGVGGPSQQVMTPQGR 147
LAGPV GVGGPSQQVMTPQ R
Sbjct: 272 LAGPVPGVGGPSQQVMTPQRR 292
Score = 30.4 bits (67), Expect = 1.4
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 200 GPPMGIPPGRGTPMGMP----PPGMRPPPPGMRGPPPPGMRPPR 239
GP + GRG G+P P G+ P PG+ GP M P R
Sbjct: 248 GPGVVRAAGRGVSAGVPIPQAPGGLAGPVPGVGGPSQQVMTPQR 291
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 80.1 bits (196), Expect = 2e-15
Identities = 60/144 (41%), Positives = 61/144 (42%), Gaps = 24/144 (16%)
Query: 113 GIPAGVPMPQAPAGLAG---PVRGVGGPSQ--------QVMTPQGR---GTVAAAAAAAT 158
GIP +P P P G AG P G G P G G A
Sbjct: 256 GIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHG 315
Query: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPPPGM--MGPPPGMRPPMGPPMGIPPGRGTPMGMP 216
G P PPG GG PPP PPPGM GPPP PP GPP G P G P MP
Sbjct: 316 PHGLGHPHAGPPGSGGQPPP----RPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGP--MP 369
Query: 217 PPGMRPPPPGMRGPPPPGMRPPRP 240
P GMR PPP M PP PPRP
Sbjct: 370 PHGMRGPPPLM--PPHGYTGPPRP 391
Score = 69.7 bits (169), Expect = 2e-12
Identities = 67/192 (34%), Positives = 72/192 (37%), Gaps = 67/192 (34%)
Query: 85 PPPKDTGIAR--VPLAGA--AGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140
PPP G A P AG AG PG G + P P P G+ P G SQ
Sbjct: 263 PPPMPPGAAGHGPPSAGTPGAGHPGHGHSH--------PHPFPPGGMPHP-----GMSQM 309
Query: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMM--GPPPGMRPP 198
+ G + G P PPG GG PPP PPPGM GPPP PP
Sbjct: 310 QLAHHGPHGL------------GHPHAGPPGSGGQPPPR----PPPGMPHPGPPPMGMPP 353
Query: 199 MGPPMGIPPGRGTPMGMPPPGMRPPPPGM----------------------------RGP 230
GPP G P G PM PP GMR PPP M R P
Sbjct: 354 RGPPFGSPMGHPGPM--PPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPP 411
Query: 231 PPP--GMRPPRP 240
PP +R P P
Sbjct: 412 VPPRGPLRGPLP 423
Score = 53.5 bits (127), Expect = 2e-07
Identities = 36/97 (37%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 148 GTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPP-----GMMGPPPGMRPPMGPP 202
G+ A AA ++ A + PPPP AP P G PPPGM PP P
Sbjct: 188 GSAAERLLAAQNPLSQADRPHQLFADAPPPP---SAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 203 MGIPPGRGTPMGMPPPGMRPP-PPGMRGPPPPGMRPP 238
+PP P G+PP PP PPG G PP P
Sbjct: 245 PPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTP 281
Score = 48.5 bits (114), Expect = 5e-06
Identities = 43/131 (32%), Positives = 46/131 (35%), Gaps = 56/131 (42%)
Query: 162 AGAPTQYPPGRGGPPPPMGRGAPPPGMMGP--PPGMRPP--------MGPPMGIPPGRG- 210
+G P P G PPP+ PPPG + P PP M PP GPP PG G
Sbjct: 230 SGLPPPGMPPPGSFPPPV----PPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGH 285
Query: 211 -----------TPMGMPPPGMRP----------------------------PPPGM--RG 229
P GMP PGM PPPGM G
Sbjct: 286 PGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPG 345
Query: 230 PPPPGMRPPRP 240
PPP GM P P
Sbjct: 346 PPPMGMPPRGP 356
Score = 37.4 bits (85), Expect = 0.012
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 167 QYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGP-PMGIPPGRGTPMGMPPPGMRPPPP 225
Q P + P + APPP P P + G+PP MPPPG PPP
Sbjct: 198 QNPLSQADRPHQLFADAPPP-----PSAPNPVVSSLGSGLPPPG-----MPPPGSFPPPV 247
Query: 226 GMRGPPPPGMRPPRP 240
G PPG+ P P
Sbjct: 248 PPPGALPPGIPPAMP 262
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 75.5 bits (184), Expect = 4e-14
Identities = 41/81 (50%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 163 GAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPG--RGTPMGMPP-PG 219
G PT PPG PP R PG+ GP P + PP GPP G PPG G P G+PP P
Sbjct: 425 GPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPP-GPPPGRPPGPPPGPPPGLPPGPP 483
Query: 220 MRPPPPGMRGPPPPGMRPPRP 240
R PPP + P PPG+ PPRP
Sbjct: 484 PRGPPPRLPPPAPPGIPPPRP 504
Score = 70.1 bits (170), Expect = 2e-12
Identities = 60/161 (37%), Positives = 70/161 (43%), Gaps = 46/161 (28%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP-VRGVGGPSQQVM 142
GPPP G P G P G+P G P P AP L P + G+ GP +++
Sbjct: 409 GPPP--LGPPPAPPLRPPGPP-------TGLPPGPP-PGAPPFLRPPGMPGLRGPLPRLL 458
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
P G P PPG PPP PPPG+ PPG PP GPP
Sbjct: 459 PP------------------GPPPGRPPG----PPP----GPPPGL---PPGP-PPRGPP 488
Query: 203 MGIPPGRGTPMGMPPPG---MRPPPPGMRGPPPPGMRPPRP 240
+PP P G+PPP MRPP GP PPG+ PP P
Sbjct: 489 PRLPP--PAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAP 527
Score = 33.5 bits (75), Expect = 0.17
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 12/54 (22%)
Query: 191 PPPGMRPPM--------GPP---MGIPPGRGTPMGMPPPGMRPPPPGMRGPPPP 233
P PG +PP GPP + I P G + PPG +PP P GPPPP
Sbjct: 157 PLPGAQPPSILKKTSAYGPPTRAVSILPLLGHGVPRLPPGRKPPGP-PPGPPPP 209
Score = 28.5 bits (62), Expect = 5.4
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 120 MPQAPAGLAG---PVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPP 176
MP AP+ + P+ G PS T G A + G P + PPGR P
Sbjct: 144 MPHAPSNILIQDIPLPGAQPPSILKKT-SAYGPPTRAVSILPLLGHGVP-RLPPGRKPPG 201
Query: 177 PPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGR 209
PP G PPP + G + +G + +PP R
Sbjct: 202 PPPG---PPPPQVVQMYGRK--VGFALDLPPRR 229
Score = 28.5 bits (62), Expect = 5.4
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 182 GAPPPGMMGPPPGMRPPMGPPMGIPP-GRGTPMGMPPPGMRPPPPGMRGP-PPPGMRPPR 239
GA PP ++ PP +P G G P PPG + P PPPG PP+
Sbjct: 160 GAQPPSILKKTSAYGPPTRAVSILPLLGHGVPR---------LPPGRKPPGPPPGPPPPQ 210
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 72.8 bits (177), Expect = 3e-13
Identities = 67/183 (36%), Positives = 76/183 (41%), Gaps = 32/183 (17%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PP GI +P AG P G IP P+P A L P+ G G P +
Sbjct: 924 PPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPG 983
Query: 145 QGRGTVAAAAAAATASI-----AGAPTQYP-PGRGGPPPPM--GRGAPPP------GMMG 190
G A AG P P PG G PPPP G G PPP G+
Sbjct: 984 AGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPP 1043
Query: 191 PPP----GMRPPMGPPM---GIPPGRGTP-MGMPPPGMRPPPPGMRGPPPP-----GMRP 237
PPP G+ PP PP+ GIPP P G+PPP PP PG PPPP G+ P
Sbjct: 1044 PPPLPGAGIPPP--PPLPGAGIPPPPPLPGAGIPPP---PPLPGAGIPPPPPLPGAGIPP 1098
Query: 238 PRP 240
P P
Sbjct: 1099 PPP 1101
Score = 71.6 bits (174), Expect = 6e-13
Identities = 64/176 (36%), Positives = 71/176 (40%), Gaps = 29/176 (16%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PP GI P AG P G GIP P+P A P+ G G P +
Sbjct: 1034 PPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPG 1093
Query: 145 QGRGTVAAAAAAATASIAGAPTQYP-PGRGGPPPPM--GRGAPPP------GMMGPPPGM 195
G G P P PG G PPPP G G PPP G+ PPP
Sbjct: 1094 AGIPPPPPLPGV------GIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLP 1147
Query: 196 R-----PPMGPPMGIPPGRGTP-MGMPPPGMRPPPPGMRGPPPP-----GMRPPRP 240
R PP P GIPP P G+PPP PP PG+ PPPP G+ PP P
Sbjct: 1148 RVGIPPPPPLPGAGIPPPPPLPGAGIPPP---PPLPGVGIPPPPPLPGVGIPPPPP 1200
Score = 61.6 bits (148), Expect = 6e-10
Identities = 64/178 (35%), Positives = 74/178 (41%), Gaps = 36/178 (20%)
Query: 77 LVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGG 136
L S + PPP G +P P G GIP P+P A P+ G G
Sbjct: 891 LPSTAIPQPPPLQ-GTEMLP-------PPPPPLPGAGIPPPPPLPGAGILPLPPLPGAGI 942
Query: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYP-PGRGGPPPPMGRGAPPPGMMGPPP-- 193
P + AA AG P P PG G PPPP GA G+ PPP
Sbjct: 943 PPPPPLPG------AAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGA---GIPPPPPLP 993
Query: 194 --GMRPPMGPPM---GIPPGRGTP-MGMPPPGMRPPPPGMRGPPPP-----GMRPPRP 240
G+ PP PP+ GIPP P G+PPP PP PG PPPP G+ PP P
Sbjct: 994 GAGIPPP--PPLPGAGIPPPPPLPGAGIPPP---PPLPGAGIPPPPPLPGAGIPPPPP 1046
Score = 54.7 bits (130), Expect = 7e-08
Identities = 55/173 (31%), Positives = 62/173 (35%), Gaps = 27/173 (15%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PP GI P G P G GIP P+P A P+ GVG P +
Sbjct: 1133 PPLPGAGIPPPPPLPRVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGVGIPPPPPLPG 1192
Query: 145 QGRGTVAAAAAAATASIAGAPTQYP-PGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
G A G P P PG G PP P PPPG PPP + P GPP+
Sbjct: 1193 VGIPPPPPLPGA------GIPPPPPLPGMGIPPAP-APPLPPPGTGIPPPPLLPVSGPPL 1245
Query: 204 GIPPGRGTPMGMPPP---GMRPPP-------------PGMRGPPPPGMRPPRP 240
G T +P P G PPP G R P RP +P
Sbjct: 1246 LPQVGSST---LPTPQVCGFLPPPLPSGLFGLGMNQDKGSRKQPIEPCRPMKP 1295
Score = 53.9 bits (128), Expect = 1e-07
Identities = 49/157 (31%), Positives = 60/157 (38%), Gaps = 30/157 (19%)
Query: 114 IPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPP--- 170
IP+ P+P + + P G+ P + T+ + A + G PP
Sbjct: 855 IPSPPPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPP 914
Query: 171 --GRGGPPPPM-------------GRGAPPP----GMMGPPPGMRPPMGPPMGIP-PGRG 210
G G PPPP G G PPP G PPP P G P+ P PG G
Sbjct: 915 LPGAGIPPPPPLPGAGILPLPPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAG 974
Query: 211 TPMGMPPPGMR-PPPPGMRG------PPPPGMRPPRP 240
P P PG PPPP + G PP PG P P
Sbjct: 975 IPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPP 1011
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 72.8 bits (177), Expect = 3e-13
Identities = 65/168 (38%), Positives = 71/168 (42%), Gaps = 35/168 (20%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAA 156
L G G PG GR P+GV PQ G GP G P V Q G A
Sbjct: 606 LDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVV---QQEGLKGEQGAP 662
Query: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPP--------PGMMGPPP-----GMRPPMGPPM 203
GAP PPG GP P GR PP G MGPP G++ P GPP
Sbjct: 663 GPRGHQGAPG--PPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPP- 719
Query: 204 GIP--PGRGTPMGMPP----PGMRPPPPGMRGPP-------PPGMRPP 238
G+P PG G G+P PG +P PPG GPP PPG PP
Sbjct: 720 GVPGPPGPGGSPGLPGEIGFPG-KPGPPGPTGPPGKDGPNGPPG--PP 764
Score = 65.1 bits (157), Expect = 5e-11
Identities = 70/230 (30%), Positives = 80/230 (34%), Gaps = 68/230 (29%)
Query: 58 QAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGI-GRAAGRGIPA 116
Q E+ EK LGL GPP +D G G PG+ G RG
Sbjct: 526 QGEKGEKGSLGL-------------PGPPGRDGSKGMRGEPGELGEPGLPGEVGMRG--- 569
Query: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAP----TQYPPGR 172
PQ P GL GP VG P Q + +GT G P Q PG
Sbjct: 570 ----PQGPPGLPGPPGRVGAPGLQGERGE-KGTRGEKGERGLDGFPGKPGDTGQQGRPGP 624
Query: 173 GGPPPPMGR-----GAPPPGMMGP------------------------PPGMRPPMGP-- 201
G P G A PPG+ G PPG R P+GP
Sbjct: 625 SGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEG 684
Query: 202 ---PMGIPPGRGTPMGMPPPGM--------RPPPPGMRGPPPPGMRPPRP 240
P G+ RG M PPG+ P PPG+ GPP PG P P
Sbjct: 685 RDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGGSPGLP 734
Score = 52.8 bits (125), Expect = 3e-07
Identities = 59/177 (33%), Positives = 68/177 (38%), Gaps = 33/177 (18%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP D +AGAAG PGI + G+ G P PQ P+GL G + G G +
Sbjct: 1201 GPPGADG------IAGAAGPPGIQGSPGK---EGPPGPQGPSGLPG-IPGEEGKEGRDGK 1250
Query: 144 PQGRGTVAAAAAAATASIAGAPTQYPP------GRGGPPPPMGRGAPP--PGMMGPP--- 192
P G A GA + PP G G P P G PG G P
Sbjct: 1251 PGPPGEPGKAGEPGLPGPEGA--RGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKD 1308
Query: 193 --PGMRPPMGP--PMGIPPGRGTP--MGMPPPGMRPPPPGMRG----PPPPGMRPPR 239
G P GP P G P G+P G P P P G +G P PG PR
Sbjct: 1309 GDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPR 1365
Score = 51.6 bits (122), Expect = 6e-07
Identities = 51/169 (30%), Positives = 60/169 (35%), Gaps = 36/169 (21%)
Query: 98 AGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAA 157
+GA G PG G+ G PQ P G GP G P P GT +
Sbjct: 1293 SGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPG-EPGPSGTPGQKGSKG 1351
Query: 158 TASIAGAPTQYPPGRGGPPPPMGRGAPP----PGMMGPP--------PGMRPPMGPP--- 202
G P P RG P P +G P PG G P PG++ GPP
Sbjct: 1352 ENGSPGLPGFLGP-RGPPGEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGK 1410
Query: 203 -----MGIP--------------PGRGTPMGMPPPGMRPPPPGMRGPPP 232
GIP PG P+G P P +P PG+RG P
Sbjct: 1411 GQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESP 1459
Score = 50.8 bits (120), Expect = 1e-06
Identities = 55/165 (33%), Positives = 64/165 (38%), Gaps = 19/165 (11%)
Query: 82 VEGPPPKDTGIARVPLAGAAGGPG-IGRAAGRGIPAGVPMPQAPAGLAGP-VRGVGGPSQ 139
+ G P KD AG G PG +G G P G+P P P +RG G
Sbjct: 941 LRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAP-GLPGPPGKGKDGEPGLRGSPGLPG 999
Query: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPM 199
+ T G V + A + PG G P RG P G+ GPP P
Sbjct: 1000 PLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPG--SRGDPGIGVAGPP----GPS 1053
Query: 200 GPP--MGIPPGRGTPMGMPPP------GMRPPPPGMRGPP-PPGM 235
GPP G P RG P G P P P PG RGPP PG+
Sbjct: 1054 GPPGDKGSPGSRGLP-GFPGPQGPAGRDGAPGNPGERGPPGKPGL 1097
Score = 48.5 bits (114), Expect = 5e-06
Identities = 56/199 (28%), Positives = 74/199 (37%), Gaps = 56/199 (28%)
Query: 89 DTGIARVPLAGAAGGPGI-GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGR 147
D GI G +G PG G RG+P G P PQ PAG G G P ++ P G+
Sbjct: 1041 DPGIGVAGPPGPSGPPGDKGSPGSRGLP-GFPGPQGPAGRDG---APGNPGER--GPPGK 1094
Query: 148 GTVAAAAAAATASIAGAP--TQYPPGRGGPPPPMG----RGAP----------------P 185
+++ + ++ PPG G P G +G P P
Sbjct: 1095 PGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGP 1154
Query: 186 PGMMGPP-----------------PGMRPPMGPPMGIPPGRGTPMGMPPPGM-----RPP 223
PG+ GPP G + G P G+P G P PPG
Sbjct: 1155 PGLPGPPGIAGPQGSQGERGADGEVGQKGDQGHP-GVPGFMGPPGNPGPPGADGIAGAAG 1213
Query: 224 PPGMRGPP----PPGMRPP 238
PPG++G P PPG + P
Sbjct: 1214 PPGIQGSPGKEGPPGPQGP 1232
Score = 45.1 bits (105), Expect = 6e-05
Identities = 53/171 (30%), Positives = 64/171 (37%), Gaps = 44/171 (25%)
Query: 78 VSMTVEGPPPKDTGIARVPLAGA--------------AGGPGIGRAAGRGIPAGVPMPQA 123
V++ E PPP R P G+ AG G AG P G+P P+
Sbjct: 445 VTVVTEPPPPPPP--QRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAG---PMGLPGPKG 499
Query: 124 PAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183
G GPV G GP + G G S+ G P PPGR G G
Sbjct: 500 DIGAIGPV-GAPGPKGE-KGDVGIGPFGQGEKGEKGSL-GLPG--PPGRDGSKGMRGE-- 552
Query: 184 PPPGMMGPP-----PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
PG +G P GMR P GPP G+P P R PG++G
Sbjct: 553 --PGELGEPGLPGEVGMRGPQGPP-----------GLPGPPGRVGAPGLQG 590
Score = 43.5 bits (101), Expect = 2e-04
Identities = 56/189 (29%), Positives = 63/189 (33%), Gaps = 44/189 (23%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRG----IPAGV--PMPQAPAGLAGPVRGVGG 136
+GP +D G G PG+ G + V P P GL G + G G
Sbjct: 1074 QGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPG-LPGFKG 1132
Query: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG-RGAPP---------- 185
P GT A + G PPG GP G RGA
Sbjct: 1133 DKGVPGKPGREGTEGKKGEAGPPGLPG-----PPGIAGPQGSQGERGADGEVGQKGDQGH 1187
Query: 186 ---PGMMGPPPGMRPP--------MGPPMGI--PPGRGTPMGMPPPGMRPPPPGMRG--- 229
PG MGPP PP GPP GI PG+ P G P P PG G
Sbjct: 1188 PGVPGFMGPPGNPGPPGADGIAGAAGPP-GIQGSPGKEGPPGPQGPSGLPGIPGEEGKEG 1246
Query: 230 ----PPPPG 234
P PPG
Sbjct: 1247 RDGKPGPPG 1255
Score = 42.0 bits (97), Expect = 5e-04
Identities = 69/222 (31%), Positives = 83/222 (37%), Gaps = 56/222 (25%)
Query: 60 EREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGI-------GRAAGR 112
ER E + G LRGE + P + G A +P GA G PG+ G
Sbjct: 772 ERGEDGLPGKPGLRGE--IGEQGLAGRPGEKGEAGLP--GAPGFPGVRGEKGDQGEKGEL 827
Query: 113 GIPAGVPMPQAPAGLAGPVRGVGGP-SQQVMTPQGR--GTVAAAAAAATASIAGAP-TQY 168
G+P G+ + G AGP G P + + TP R G + G P Q
Sbjct: 828 GLP-GLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQG 886
Query: 169 PPGR---GGPPPPMG-------RGAP-------PPGMMGPPPGMRPPMGPP--MGIPPGR 209
PG GP P G GAP PG +G P P GPP +G P R
Sbjct: 887 RPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAP----GPSGPPGSVGAPGLR 942
Query: 210 GTP--------------MGMP-PPGMR--PPPPGMRGPPPPG 234
GTP G P P G R P PG+ GPP G
Sbjct: 943 GTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKG 984
Score = 42.0 bits (97), Expect = 5e-04
Identities = 54/193 (27%), Positives = 61/193 (31%), Gaps = 61/193 (31%)
Query: 99 GAAGGPGI-GRAAGRGI--PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQ----GRGTVA 151
G G PGI G G+ P G+P P G GP G P + +P R
Sbjct: 1411 GQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQE 1470
Query: 152 AAAAAATASIAGAPTQYPP-------GRGGPPPPMGRGAPP-----------PGMMG--- 190
+A Q PP GR GPP P G+ P PG G
Sbjct: 1471 ELGKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEG 1530
Query: 191 -------------------PPPGMRPPMGPPMGIP-------------PGRGTPMGMPPP 218
P G+R MGPP GIP PG P G P
Sbjct: 1531 PSGPIGPKGERGAKGDPGAPGVGLRGEMGPP-GIPGQPGEPGYAKDGLPGIPGPQGETGP 1589
Query: 219 GMRPPPPGMRGPP 231
P PG GPP
Sbjct: 1590 AGHPGLPGPPGPP 1602
Score = 38.1 bits (87), Expect = 0.007
Identities = 37/120 (30%), Positives = 42/120 (35%), Gaps = 19/120 (15%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG GR P G P GL GP +G P+G A
Sbjct: 1500 GPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPSGPIG--------PKGERGAKGDPGAPG 1551
Query: 159 ASIAGAPTQYPPGRGGPPPPMG---RGAP----PPGMMGPP--PGMRPPMGPPMGIPPGR 209
+ G PPG G P G G P P G GP PG+ P GPP P +
Sbjct: 1552 VGLRG--EMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPSQ 1609
Score = 37.4 bits (85), Expect = 0.012
Identities = 38/119 (31%), Positives = 40/119 (33%), Gaps = 18/119 (15%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP KD R G G PG G G P+G P P G G G P
Sbjct: 1503 GPPGKDGLPGRAGPMGEPGRPGQGGLEG---PSG---PIGPKGERGAKGDPGAP------ 1550
Query: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP--PGMMGP--PPGMRPP 198
G G G P G G P P G P PG+ GP PPG P
Sbjct: 1551 --GVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDP 1607
Score = 30.4 bits (67), Expect = 1.4
Identities = 31/105 (29%), Positives = 38/105 (36%), Gaps = 31/105 (29%)
Query: 161 IAGAPTQYPPGRGGPPPPMGRGAPPPGM----------MGPPPGMRPPMG--PPMGIPPG 208
I P Q PPPP + P PG P G + MG PMG+P
Sbjct: 438 IPSGPCQVTVVTEPPPPPPPQRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGP 497
Query: 209 RGT-----PMGMPPP-------GMRPPPPGMRG-------PPPPG 234
+G P+G P P G+ P G +G P PPG
Sbjct: 498 KGDIGAIGPVGAPGPKGEKGDVGIGPFGQGEKGEKGSLGLPGPPG 542
Score = 30.4 bits (67), Expect = 1.4
Identities = 29/83 (34%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 89 DTGIARVPLAGAAGGPGIGRAAGR------GIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
D G V L G G PGI G G+P G+P PQ G AG G+ GP
Sbjct: 1546 DPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGLP-GIPGPQGETGPAGH-PGLPGP----- 1598
Query: 143 TPQGRGTVAAAAAAATASIAGAP 165
P G + A AS+A P
Sbjct: 1599 -PGPPGQCDPSQCAYFASLAARP 1620
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 72.4 bits (176), Expect = 3e-13
Identities = 52/149 (34%), Positives = 66/149 (44%), Gaps = 20/149 (13%)
Query: 101 AGGPGIGRAAG---RGIPAGVPMPQA-----PAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152
AG PG+ R G+P P+P++ P GL P GP+ P G
Sbjct: 225 AGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPA-----PSGPPGPPQ 279
Query: 153 AAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI-PPGRGT 211
A AP +PP G PP G P PG+ P PG+ PP G+ PP G
Sbjct: 280 LPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPPTS---GVHPPAPG- 335
Query: 212 PMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
+ P PG+ PP PG+ PP PG+ PP P
Sbjct: 336 -VHPPAPGVHPPAPGVH-PPAPGVHPPAP 362
Score = 65.1 bits (157), Expect = 5e-11
Identities = 59/175 (33%), Positives = 73/175 (41%), Gaps = 28/175 (16%)
Query: 85 PPPKDTGIARVPLAGAA--GGPGIGR----AAGRGIPAGVPMPQAPAGLAGPVRGVGGPS 138
PPP + +P G A G PG + A G PA V P A +G+ P GV P+
Sbjct: 254 PPPGGLPLPPMPPTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPA-SGVHPPAPGVHPPA 312
Query: 139 QQVMTPQGRGTVAAAAAAATASI-AGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
V P A T+ + AP +PP G PP G P PG+ P PG+ P
Sbjct: 313 PGVHPP------APGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHP 366
Query: 198 PMGPPMGI-PPGRGTPMGMP-----PPGMRPPPPGMR------GPPPPGMRPPRP 240
P P G+ P G P PG+ PP PGM P PPG+ P P
Sbjct: 367 P--PSAGVHPQAPGVHPAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPPGVHPSAP 419
Score = 54.7 bits (130), Expect = 7e-08
Identities = 45/134 (33%), Positives = 54/134 (40%), Gaps = 18/134 (13%)
Query: 109 AAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
A G PA P AP G+ P GV P+ V P G A A AP +
Sbjct: 333 APGVHPPAPGVHPPAP-GVHPPAPGVHPPAPGVHPPPSAGVHPQAPGVHPA----APAVH 387
Query: 169 PPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMR 228
P G PP G PG+ PPG+ P G+ P PPG+ P PG+
Sbjct: 388 PQAPGVHPPAPGMHPQAPGVHPQPPGVHP---SAPGVHP--------QPPGVHPSNPGVH 436
Query: 229 GPP--PPGMRPPRP 240
P PP +RPP P
Sbjct: 437 PPTPMPPMLRPPLP 450
Score = 54.7 bits (130), Expect = 7e-08
Identities = 43/123 (34%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 109 AAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAA---ATASIAGAP 165
A G PA P AP G+ P GV P + PQ G AA A A AP
Sbjct: 340 APGVHPPAPGVHPPAP-GVHPPAPGVHPPPSAGVHPQAPGVHPAAPAVHPQAPGVHPPAP 398
Query: 166 TQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP---MGPPMGIPPGRGTPMGMPPPGMRP 222
+P G P P G PG+ PPG+ P + PP +PP P+ PG P
Sbjct: 399 GMHPQAPGVHPQPPGVHPSAPGVHPQPPGVHPSNPGVHPPTPMPPMLRPPLPSEGPGNIP 458
Query: 223 PPP 225
PPP
Sbjct: 459 PPP 461
Score = 54.3 bits (129), Expect = 9e-08
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 175 PPPPMGRGAPPPGMMGPPPGM------RPPMGPPMGIPPGRGTPM-GMPPPG---MRPPP 224
PP P A PPG+ PPP + RPP+ + PP G P+ MPP G PP
Sbjct: 217 PPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSGPPG 276
Query: 225 PGMRGPPPPGMRPPRP 240
P PP PG+ PP P
Sbjct: 277 PPQLPPPAPGVHPPAP 292
Score = 46.2 bits (108), Expect = 3e-05
Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 179 MGRGAPPPGMMGPPPGMRPPMGPPM-GIPPGRGTPMGMPPP---GMRPPP-----PGMRG 229
M + PP + PPG++ P P M G+PP P +PPP G+ PP P G
Sbjct: 214 MEKPPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMPPTGPAPSG 273
Query: 230 PP-PPGMRPPRP 240
PP PP + PP P
Sbjct: 274 PPGPPQLPPPAP 285
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 70.5 bits (171), Expect = 1e-12
Identities = 57/174 (32%), Positives = 69/174 (39%), Gaps = 20/174 (11%)
Query: 83 EGPPPKDTG---IARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAG-PVRGVGGPS 138
+GPPP+ AR P G P G +G P PQ P G +G P
Sbjct: 222 QGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 281
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRG----GPPPPMGRGAPPPGMMGPPPG 194
+ PQG + + ++ S G P PP G GPPPP G+ PP G P
Sbjct: 282 K----PQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 337
Query: 195 MRPPMGPPMGIPP--GRGTPMGMPPPGMRPPPPGMRG------PPPPGMRPPRP 240
PP G P G PP G + PPG PP G PPP G P +P
Sbjct: 338 GPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQP 391
Score = 67.4 bits (163), Expect = 1e-11
Identities = 66/193 (34%), Positives = 79/193 (40%), Gaps = 40/193 (20%)
Query: 83 EGPPPKD--TGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAG-PVRGVGGPSQ 139
+GPPP+ + R P G P G +G P PQ P G +G P +
Sbjct: 99 QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 158
Query: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRG----GPPPPMG-------------RG 182
PQG + ++ S G P PP G GPPPP G +G
Sbjct: 159 ----PQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQG 214
Query: 183 APPPGM-MGPPP-------GMRPPMGPPMGIPP-GRGTPMGMPPPGMRP--PPP----GM 227
PPPG GPPP R P G P G PP G P G PPP +P PPP
Sbjct: 215 PPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 274
Query: 228 RGPPPPGMRPPRP 240
+GPPPPG +P P
Sbjct: 275 QGPPPPG-KPQGP 286
Score = 66.2 bits (160), Expect = 2e-11
Identities = 54/184 (29%), Positives = 70/184 (38%), Gaps = 20/184 (10%)
Query: 76 NLVSMTVEGPPPKDTGIARVPLAGAA---GGPGIGRAAGRGIPAGVPMPQAPAGLAGPVR 132
+L++ +G PP+ + P + G P G +G P PQ P G
Sbjct: 30 SLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 89
Query: 133 GVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPP 192
P + P +G + + + G P Q GPPPP G+ PP G
Sbjct: 90 QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 149
Query: 193 PGMRPPMGPPMGIPP-----------GRGTPMGMPPPGMR-----PPPPGM-RGPPPPGM 235
P PP G P G PP G P G PP G PPPPG +GPPP G
Sbjct: 150 PQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG 209
Query: 236 RPPR 239
P+
Sbjct: 210 NKPQ 213
Score = 63.5 bits (153), Expect = 2e-10
Identities = 50/151 (33%), Positives = 62/151 (41%), Gaps = 33/151 (21%)
Query: 109 AAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQY 168
++ + + V ++P+ +AG +G P Q PQG S G P
Sbjct: 14 SSAQNLNEDVSQEESPSLIAGNPQGA--PPQGGNKPQG-----------PPSPPGKPQGP 60
Query: 169 PPGRG----GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPP----------GRGTPMG 214
PP G GPPPP G+ PP G P PP G P G PP G P G
Sbjct: 61 PPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQG 120
Query: 215 MPPPGMR-----PPPPGM-RGPPPPGMRPPR 239
PP G PPPPG +GPPP G P+
Sbjct: 121 PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 151
Score = 63.5 bits (153), Expect = 2e-10
Identities = 58/172 (33%), Positives = 63/172 (36%), Gaps = 21/172 (12%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPPP+ + P G P G P G P P P G P
Sbjct: 58 QGPPPQGGNQPQGP-PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPG 116
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRG----GPPPP-MGRGAPPPG------MMGP 191
PQG G P PP G GPPPP +G PP G P
Sbjct: 117 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSP 176
Query: 192 P--PGMRPPMG--PPMGIPPGRGTPMGMPPPG----MRPPPPGM-RGPPPPG 234
P P PP G P G PP G P G PP G PPPPG +GPPP G
Sbjct: 177 PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 228
Score = 62.0 bits (149), Expect = 4e-10
Identities = 59/176 (33%), Positives = 68/176 (38%), Gaps = 28/176 (15%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPPP+ + P G P G P G P P P G P +G SQ
Sbjct: 181 QGPPPQGGNQPQGP-PPPPGKPQGPPPQGGNKPQGPPPPGKPQG--PPPQG-DNKSQSAR 236
Query: 143 TPQGRGTVAAAAAAATASIAGAPT---QYPPGRGG------PPPPMGRGAPPPG------ 187
+P G+ P Q PP +GG PPP +G PP G
Sbjct: 237 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRS 296
Query: 188 MMGPP--PGMRPPMG--PPMGIPPGRGTPMGMPPPG----MRPPPPGM-RGPPPPG 234
PP P PP G P G PP G P G PP G PPPPG +GPPP G
Sbjct: 297 SRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG 352
Score = 35.8 bits (81), Expect = 0.034
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 200 GPPMGIPP-GRGTPMGMPPPGMRP--PPP----GMRGPPPPGMRPPRP 240
G P G PP G P G P P +P PPP +GPPPP +P P
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 81
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 70.5 bits (171), Expect = 1e-12
Identities = 55/175 (31%), Positives = 67/175 (38%), Gaps = 18/175 (10%)
Query: 83 EGPPPKD--TGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140
+GPPP+ + R P G P G +G P PQ P G P +
Sbjct: 78 QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGK 137
Query: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200
P +G + + + G P Q GPPPP G+ PP G P PP G
Sbjct: 138 PQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPG 197
Query: 201 PPMGIPP----------GRGTPMGMPPPGMR-----PPPPGM-RGPPPPGMRPPR 239
P G PP G P G PP G PPPPG +GPPP G P+
Sbjct: 198 KPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ 252
Score = 65.5 bits (158), Expect = 4e-11
Identities = 51/169 (30%), Positives = 65/169 (38%), Gaps = 12/169 (7%)
Query: 83 EGPPPKD--TGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140
+GPPP+ + R P G P G +G P PQ P G P +
Sbjct: 139 QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGK 198
Query: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200
P +G + ++ + G P Q GPPPP G+ PP G P PP G
Sbjct: 199 PQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPG 258
Query: 201 PPMGIPPGRG---TPMGMPPPGMRPPPPGMRG------PPPPGMRPPRP 240
P G PP +G + PPG PP G PPP G P +P
Sbjct: 259 KPQG-PPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQP 306
Score = 65.1 bits (157), Expect = 5e-11
Identities = 51/159 (32%), Positives = 60/159 (37%), Gaps = 20/159 (12%)
Query: 101 AGGPGIGRAAGRGIPAGVP----MPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAA 156
AG P G P G P PQ P G P + P +G + + +
Sbjct: 33 AGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS 92
Query: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPP--------- 207
G P Q GPPPP G+ PP G P PP G P G PP
Sbjct: 93 PPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPR 152
Query: 208 -GRGTPMGMPPPGMR-----PPPPGM-RGPPPPGMRPPR 239
G P G PP G PPPPG +GPPP G + P+
Sbjct: 153 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQ 191
Score = 63.5 bits (153), Expect = 2e-10
Identities = 43/90 (47%), Positives = 47/90 (52%), Gaps = 19/90 (21%)
Query: 169 PPGRGGPPPPMG----RGAPPPGM-MGPPP------GMRPPMGPPMGIPP-GRGTPMGMP 216
PPG+ PPP G +G PPPG GPPP R P G P G PP G P G P
Sbjct: 53 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 112
Query: 217 PPGMRP--PPP--GMR--GPPPPGMRPPRP 240
PP +P PPP G R GPPPPG +P P
Sbjct: 113 PPPGKPQGPPPQGGNRPQGPPPPG-KPQGP 141
Score = 59.3 bits (142), Expect = 3e-09
Identities = 40/99 (40%), Positives = 43/99 (43%), Gaps = 20/99 (20%)
Query: 161 IAGAPTQYPPGRG----GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPP--------- 207
IAG P P G GPPPP G+ PP G P PP G P G PP
Sbjct: 32 IAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPR 91
Query: 208 -GRGTPMGMPPPGMR-----PPPPGM-RGPPPPGMRPPR 239
G P G PP G PPPPG +GPPP G P+
Sbjct: 92 SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQ 130
Score = 57.0 bits (136), Expect = 1e-08
Identities = 59/174 (33%), Positives = 64/174 (36%), Gaps = 19/174 (10%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPPP+ + P G P G P G P P P G P +G S Q
Sbjct: 159 QGPPPQGGNQPQGP-PPPPGKPQGPPPQGGKKPQGPPPPGKPQG--PPPQGDKSRSSQSP 215
Query: 143 T--PQGRGTVAAAAAAATASIAGAPTQYPPGRG----GPPPPMGRGAPPPGMMGPPPGMR 196
PQG G P PP G GPPPP PP R
Sbjct: 216 PGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSAR 275
Query: 197 PPMGPPMGIPPGRG-TPMGMPPP-GMRP-----PPPGM-RGP--PPPGMRPPRP 240
P G P G P G P G PPP G P PP G +GP PP G RP RP
Sbjct: 276 SPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRP 329
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 70.5 bits (171), Expect = 1e-12
Identities = 48/128 (37%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAG----APTQYPPGRGG-----PPPPMGRGAPP 185
GG S+Q + + +G + ++ G P Q PP +GG PPPP G+ P
Sbjct: 35 GGDSEQFLDEERQGPPLGGQQSQPSAGDGNQDDGPQQGPPQQGGQQQQGPPPPQGKPQGP 94
Query: 186 PGMMGPPPGMRPPMGPPMGIP-------PGRGTPMGMPPPGMR-----PPPPGM-RGPPP 232
P G PP PP G P G P P RG P G P G PPPPG +GPPP
Sbjct: 95 PQQGGHPP---PPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPP 151
Query: 233 PGMRPPRP 240
G RP P
Sbjct: 152 QGGRPQGP 159
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/125 (29%), Positives = 39/125 (31%), Gaps = 41/125 (32%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPPP P G P GR G G P P P G
Sbjct: 82 QGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRP--PRG---------------- 123
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
PQG P Q + GPPPP PP GPPP P GPP
Sbjct: 124 RPQG------------------PPQQGGHQQGPPPP-----PPGKPQGPPPQGGRPQGPP 160
Query: 203 MGIPP 207
G P
Sbjct: 161 QGQSP 165
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 70.5 bits (171), Expect = 1e-12
Identities = 49/134 (36%), Positives = 55/134 (41%), Gaps = 10/134 (7%)
Query: 112 RGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYP-P 170
RG P P+AP G P P AAA A A + A A T P P
Sbjct: 104 RGATPPAP-PRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSP 162
Query: 171 GRGGPPPPMGRGAP---PPGMMGPPPGMRPPMGPPMGIPP---GRGTPMGMPPPGMRPPP 224
G P P R AP PP PP + PP GP PP R P +PPP P P
Sbjct: 163 GPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPP--LPPPPQPPAP 220
Query: 225 PGMRGPPPPGMRPP 238
P + PPPP +PP
Sbjct: 221 PQQQQPPPPQPQPP 234
Score = 33.1 bits (74), Expect = 0.22
Identities = 36/120 (30%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAP-----AGLAGPVRGVGGPSQ 139
PPP A V A A P AA P+ P P A LA P P
Sbjct: 135 PPP-----APVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPA 189
Query: 140 QVMTPQGRGTVAAAAAAATASIAGAPTQ--YPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197
V P G A AA P Q PP + PPPP + P G + RP
Sbjct: 190 -VAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARP 248
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/96 (29%), Positives = 28/96 (29%), Gaps = 33/96 (34%)
Query: 160 SIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPG 219
S A PP RG PP APP R P G P P PPP
Sbjct: 92 SYRNAARVQPPRRGATPP-----APP----------RAPRGAPAAAAAAAPPPTPAPPP- 135
Query: 220 MRPPPP---------------GMRGPPPPGMRPPRP 240
PP P PP PG P P
Sbjct: 136 --PPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGP 169
Score = 28.5 bits (62), Expect = 5.4
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 22/81 (27%)
Query: 129 GPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM 188
GP G G ++QV + A+ AT + +P PPG+
Sbjct: 394 GPAPGSG--TRQVFSMAAMNKEGGTASVATGPDSPSPVPLPPGK---------------- 435
Query: 189 MGPPPGMRPPMGPPMGIPPGR 209
P + G P G PPGR
Sbjct: 436 ----PALPGADGTPFGCPPGR 452
>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 70.1 bits (170), Expect = 2e-12
Identities = 48/128 (37%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAG----APTQYPPGRGG-----PPPPMGRGAPP 185
GG S+Q + + +G + ++ G P Q PP +GG PPPP G+ P
Sbjct: 35 GGDSEQFIDEERQGPPLGGQQSQPSAGDGNQNDGPQQGPPQQGGQQQQGPPPPQGKPQGP 94
Query: 186 PGMMGPPPGMRPPMGPPMGIP-------PGRGTPMGMPPPGMR-----PPPPGM-RGPPP 232
P G PP PP G P G P P RG P G P G PPPPG +GPPP
Sbjct: 95 PQQGGHPP---PPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPP 151
Query: 233 PGMRPPRP 240
G RP P
Sbjct: 152 QGGRPQGP 159
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/125 (29%), Positives = 39/125 (31%), Gaps = 41/125 (32%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPPP P G P GR G G P P P G
Sbjct: 82 QGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRP--PRG---------------- 123
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
PQG P Q + GPPPP PP GPPP P GPP
Sbjct: 124 RPQG------------------PPQQGGHQQGPPPP-----PPGKPQGPPPQGGRPQGPP 160
Query: 203 MGIPP 207
G P
Sbjct: 161 QGQSP 165
>gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 70.1 bits (170), Expect = 2e-12
Identities = 48/128 (37%), Positives = 58/128 (45%), Gaps = 25/128 (19%)
Query: 135 GGPSQQVMTPQGRGTVAAAAAAATASIAG----APTQYPPGRGG-----PPPPMGRGAPP 185
GG S+Q + + +G + ++ G P Q PP +GG PPPP G+ P
Sbjct: 35 GGDSEQFIDEERQGPPLGGQQSQPSAGDGNQNDGPQQGPPQQGGQQQQGPPPPQGKPQGP 94
Query: 186 PGMMGPPPGMRPPMGPPMGIP-------PGRGTPMGMPPPGMR-----PPPPGM-RGPPP 232
P G PP PP G P G P P RG P G P G PPPPG +GPPP
Sbjct: 95 PQQGGHPP---PPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPP 151
Query: 233 PGMRPPRP 240
G RP P
Sbjct: 152 QGGRPQGP 159
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/125 (29%), Positives = 39/125 (31%), Gaps = 41/125 (32%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPPP P G P GR G G P P P G
Sbjct: 82 QGPPPPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRP--PRG---------------- 123
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
PQG P Q + GPPPP PP GPPP P GPP
Sbjct: 124 RPQG------------------PPQQGGHQQGPPPP-----PPGKPQGPPPQGGRPQGPP 160
Query: 203 MGIPP 207
G P
Sbjct: 161 QGQSP 165
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 69.7 bits (169), Expect = 2e-12
Identities = 64/214 (29%), Positives = 83/214 (38%), Gaps = 22/214 (10%)
Query: 41 ILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP-PKDTGIARVPLAG 99
I DC R P++++ R +K L L+ GE V +V P T +A P
Sbjct: 288 IASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPA 347
Query: 100 AAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV--GGPSQQVMTPQGRGTVAAAAAAA 157
A + + P + + P G+ GGP P + +
Sbjct: 348 APANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPH---SFPHPLPSL 404
Query: 158 TASIAGAPTQY------PPGRGGPPPPMGRGAPPPGMMGPPP-----GMRPPMGPPMGIP 206
T G P Q+ PP PPPPM +G PPG GPPP G P +
Sbjct: 405 TGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLH 464
Query: 207 PGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
G+G M PP GM PPPP PPP G PP P
Sbjct: 465 QGKGM-MPPPPMGMMPPPP----PPPSGQPPPPP 493
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 69.7 bits (169), Expect = 2e-12
Identities = 64/214 (29%), Positives = 83/214 (38%), Gaps = 22/214 (10%)
Query: 41 ILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP-PKDTGIARVPLAG 99
I DC R P++++ R +K L L+ GE V +V P T +A P
Sbjct: 288 IASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPA 347
Query: 100 AAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV--GGPSQQVMTPQGRGTVAAAAAAA 157
A + + P + + P G+ GGP P + +
Sbjct: 348 APANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPH---SFPHPLPSL 404
Query: 158 TASIAGAPTQY------PPGRGGPPPPMGRGAPPPGMMGPPP-----GMRPPMGPPMGIP 206
T G P Q+ PP PPPPM +G PPG GPPP G P +
Sbjct: 405 TGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLH 464
Query: 207 PGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
G+G M PP GM PPPP PPP G PP P
Sbjct: 465 QGKGM-MPPPPMGMMPPPP----PPPSGQPPPPP 493
Score = 50.1 bits (118), Expect = 2e-06
Identities = 51/186 (27%), Positives = 65/186 (34%), Gaps = 42/186 (22%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRA-AGRGI----PAGVPMPQAPAGLAGPVRGVGGP- 137
GPPP D + P+ G G+ R G+G+ P G+ P P P GP
Sbjct: 443 GPPPMDQYLGSTPV-----GSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPL 497
Query: 138 --------------------SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPP 177
+ P + T +A T SI Q P
Sbjct: 498 PPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGA 557
Query: 178 PMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPP---GMRPPPPGMRGPPPPG 234
P +G P M+ PPG++P +PPG P PPP GM PP G GP
Sbjct: 558 PQMQGNPT--MVPLPPGVQP------PLPPGAPPPPPPPPPGSAGMMIPPRGGDGPSHES 609
Query: 235 MRPPRP 240
PRP
Sbjct: 610 EDFPRP 615
Score = 47.8 bits (112), Expect = 9e-06
Identities = 60/230 (26%), Positives = 78/230 (33%), Gaps = 65/230 (28%)
Query: 76 NLVSMTVEGPP-----PKDTGIARVPLAGAAGGPGIG-RAAGRGIPA------GVPMPQA 123
+L+S T PP P ++ G GGPG G + +P+ G PM
Sbjct: 357 SLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHN 416
Query: 124 PAGLAGP-VRGVGGPSQQVMTPQGR-GTVAAAAAAATASIAGAPTQYPPGRGG-PPPPMG 180
P G P ++ P Q P G G + + + G+G PPPPMG
Sbjct: 417 PNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMG 476
Query: 181 RGAPPP----GMMGPPPG----------MRPPMGPPMGIPPGRGTPM------------- 213
PPP G PPP +PP PP TP+
Sbjct: 477 MMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSA 536
Query: 214 ---GMPP--------------------PGMRPPPPGMRGPPPPGMRPPRP 240
+PP P M P PPG++ P PPG PP P
Sbjct: 537 GTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPP 586
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 69.7 bits (169), Expect = 2e-12
Identities = 64/214 (29%), Positives = 83/214 (38%), Gaps = 22/214 (10%)
Query: 41 ILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP-PKDTGIARVPLAG 99
I DC R P++++ R +K L L+ GE V +V P T +A P
Sbjct: 288 IASDCKFQRPGDPQSAQDKARMDKEYLSLMAELGEAPVPASVGSTSGPATTPLASAPRPA 347
Query: 100 AAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV--GGPSQQVMTPQGRGTVAAAAAAA 157
A + + P + + P G+ GGP P + +
Sbjct: 348 APANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPH---SFPHPLPSL 404
Query: 158 TASIAGAPTQY------PPGRGGPPPPMGRGAPPPGMMGPPP-----GMRPPMGPPMGIP 206
T G P Q+ PP PPPPM +G PPG GPPP G P +
Sbjct: 405 TGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLH 464
Query: 207 PGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
G+G M PP GM PPPP PPP G PP P
Sbjct: 465 QGKGM-MPPPPMGMMPPPP----PPPSGQPPPPP 493
Score = 57.0 bits (136), Expect = 1e-08
Identities = 62/204 (30%), Positives = 73/204 (35%), Gaps = 63/204 (30%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRA-AGRGI----PAGVPMPQAPAGLAGPVRGVGGP- 137
GPPP D + P+ G G+ R G+G+ P G+ P P P GP
Sbjct: 443 GPPPMDQYLGSTPV-----GSGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPL 497
Query: 138 ----SQQVMTPQ---------------------------GRGTV--------AAAAAAAT 158
QQ P G G++ AAAA+
Sbjct: 498 PPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPPWQQQQAAAAASPGA 557
Query: 159 ASIAGAPTQYPPGRGGPPP-PMGRGAPPP-------GMM-GPPPGMRPPMGPPMGIPPGR 209
+ G PT P G PP P G PPP GMM PPP PPM P +
Sbjct: 558 PQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPPPGSAGMMYAPPPPPPPPMDPSNFVTMMG 617
Query: 210 GTPMGMPPPGMRPPPPGMRGPPPP 233
GMPP GM P PP PPPP
Sbjct: 618 MGVAGMPPFGMPPAPP----PPPP 637
Score = 47.8 bits (112), Expect = 9e-06
Identities = 60/230 (26%), Positives = 78/230 (33%), Gaps = 65/230 (28%)
Query: 76 NLVSMTVEGPP-----PKDTGIARVPLAGAAGGPGIG-RAAGRGIPA------GVPMPQA 123
+L+S T PP P ++ G GGPG G + +P+ G PM
Sbjct: 357 SLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGGPHSFPHPLPSLTGGHGGHPMQHN 416
Query: 124 PAGLAGP-VRGVGGPSQQVMTPQGR-GTVAAAAAAATASIAGAPTQYPPGRGG-PPPPMG 180
P G P ++ P Q P G G + + + G+G PPPPMG
Sbjct: 417 PNGPPPPWMQPPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYRLHQGKGMMPPPPMG 476
Query: 181 RGAPPP----GMMGPPPG----------MRPPMGPPMGIPPGRGTPM------------- 213
PPP G PPP +PP PP TP+
Sbjct: 477 MMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSA 536
Query: 214 ---GMPP--------------------PGMRPPPPGMRGPPPPGMRPPRP 240
+PP P M P PPG++ P PPG PP P
Sbjct: 537 GTGSIPPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPP 586
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 69.3 bits (168), Expect = 3e-12
Identities = 55/165 (33%), Positives = 61/165 (36%), Gaps = 25/165 (15%)
Query: 85 PPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
PPP+D+ V G PG+G A PA P A +G G
Sbjct: 101 PPPQDSS-KPVVAQGPGPAPGVGSAP----PASSSAPPATPPTSGAPPG----------- 144
Query: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGP-PPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
G G A T++ GAP PP G P PP G PPP P PG P GP
Sbjct: 145 SGPGPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGP 204
Query: 204 GIPPGRGTPMGMPP--------PGMRPPPPGMRGPPPPGMRPPRP 240
G P G P G P PG P PP G P G R P
Sbjct: 205 GGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHP 249
Score = 48.5 bits (114), Expect = 5e-06
Identities = 34/88 (38%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 171 GRGG------PPPPMG----RG--APPPGMMGPPPGMRPP------MGPPMGIPPGRGTP 212
GRGG PPP MG RG P PG GP P + PP PP PP + P
Sbjct: 24 GRGGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPP 83
Query: 213 MGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
PPP P P + PPPP +P
Sbjct: 84 PHQPPP--HPQPHQQQQPPPPPQDSSKP 109
Score = 48.1 bits (113), Expect = 7e-06
Identities = 50/169 (29%), Positives = 57/169 (33%), Gaps = 42/169 (24%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G GG G G R P G+ + Q G GP G GP + P
Sbjct: 20 GGGGGRG-GLHDFRSPPPGMGLNQN-RGPMGPGPGQSGPKPPIPPPPPHQQQQQP----- 72
Query: 159 ASIAGAPTQYPPGRGGPP--------PPMGRGAPPPGM----------MGPPPGM----- 195
P Q PP + PP P + PPP GP PG+
Sbjct: 73 ------PPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPP 126
Query: 196 ----RPPMGPP-MGIPPGRGT-PMGMPPPGMRPPPPGMRGPPPPGMRPP 238
PP PP G PPG G P PPP + PPG P PP P
Sbjct: 127 ASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVP 175
Score = 46.6 bits (109), Expect = 2e-05
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 170 PGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRG 229
PG+ GP PP+ P PPP PP PP PP P P +PPPP
Sbjct: 51 PGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPP----PHPQPHQQQQPPPPPQDS 106
Query: 230 PPPPGMRPPRP 240
P + P P
Sbjct: 107 SKPVVAQGPGP 117
Score = 39.3 bits (90), Expect = 0.003
Identities = 40/120 (33%), Positives = 43/120 (35%), Gaps = 32/120 (26%)
Query: 79 SMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS 138
S V PP+ G P A GPG + G G P G MP GP G GGP
Sbjct: 171 SSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPGGPKGGKMP------GGPKPG-GGPG 223
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPP----GMMGPPPG 194
+ TP G PP RGG P GR PP GPPPG
Sbjct: 224 --LSTPGGH-------------------PKPPHRGGGEPRGGRQHHPPYHQQHHQGPPPG 262
Score = 32.0 bits (71), Expect = 0.49
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 20/78 (25%)
Query: 171 GRGGPPPPMGRGAPPPGM---MGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227
G GG G G G+ PPPGM G+ RG PMG P PG P P +
Sbjct: 11 GGGGGFHRRGGGGGRGGLHDFRSPPPGM--------GLNQNRG-PMG-PGPGQSGPKPPI 60
Query: 228 RGPP-------PPGMRPP 238
PP PP +PP
Sbjct: 61 PPPPPHQQQQQPPPQQPP 78
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 69.3 bits (168), Expect = 3e-12
Identities = 56/159 (35%), Positives = 63/159 (39%), Gaps = 10/159 (6%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPPP+ P G G G G P G P PQ GP G P
Sbjct: 153 QGPPPRPGKPEGPPPQG--GNQSQGPPPHPGKPEGPP-PQGGNQSQGPPPRPGKPEGP-- 207
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202
PQG G + G P+Q GPPP G+ PP G P PP G P
Sbjct: 208 PPQG-GNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRP 266
Query: 203 MGIPPGRGTP-MGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
G PP G P +PPP +P P PPP G RP RP
Sbjct: 267 QGPPPPGGNPQQPLPPPAGKPQGP---PPPPQGGRPHRP 302
Score = 62.4 bits (150), Expect = 3e-10
Identities = 60/175 (34%), Positives = 65/175 (37%), Gaps = 24/175 (13%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPPP+ P G G G G P G P PQ GP G P
Sbjct: 69 QGPPPRPGKPEGPPPQG--GNQSQGPPPRPGKPEGQP-PQGGNQSQGPPPRPGKPEGP-- 123
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGR--GAPPPG---MMGPPPGMRP 197
PQG G + G P Q GPPP G+ G PP G GPPP
Sbjct: 124 PPQG-GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGK 182
Query: 198 PMGPP-------MGIPPGRGTPMGMPPPGMR-----PPPPGM-RGPPPPGMRPPR 239
P GPP G PP G P G PP G PP PG GPP G P+
Sbjct: 183 PEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQ 237
Score = 53.9 bits (128), Expect = 1e-07
Identities = 45/111 (40%), Positives = 47/111 (42%), Gaps = 22/111 (19%)
Query: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGRG----GPPPPMGR--GAPPPG---MMGPPPG 194
P+GR T G P PP G GPPP G+ G PP G GPPP
Sbjct: 36 PEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP- 94
Query: 195 MRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMR-----PPRP 240
RP G P G PP G PPP RP P GPPP G PPRP
Sbjct: 95 -RP--GKPEGQPPQGGNQSQGPPP--RPGKP--EGPPPQGGNQSQGPPPRP 138
Score = 52.8 bits (125), Expect = 3e-07
Identities = 57/173 (32%), Positives = 62/173 (35%), Gaps = 37/173 (21%)
Query: 101 AGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRG--VGGPSQQVMTPQGRGTVAAAAAAAT 158
+G P R G P P P P G GP + P+G +
Sbjct: 33 SGKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGP 92
Query: 159 ASIAGAPTQYPPGRG----GPPPPMGR--GAPPPG---MMGPPPGMRPPMGPP------- 202
G P PP G GPPP G+ G PP G GPPP RP G P
Sbjct: 93 PPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPP--RP--GKPEGPPPQG 148
Query: 203 ----MGIPPGRGTPMGMPPPGMR-----PPPPGM-RGPPPPGMR-----PPRP 240
G PP G P G PP G PP PG GPPP G PPRP
Sbjct: 149 GNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRP 201
Score = 45.1 bits (105), Expect = 6e-05
Identities = 37/93 (39%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
Query: 161 IAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG--PPMGIPPGRGTPMGMPPP 218
I+G P P G P R PPPG P RPP G G PP G P G PP
Sbjct: 32 ISGKPEGRRPQGGNQPQ---RTPPPPGK----PEGRPPQGGNQSQGPPPRPGKPEGPPPQ 84
Query: 219 GMR-----PPPPGM-RGPPPPGMR-----PPRP 240
G PP PG G PP G PPRP
Sbjct: 85 GGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRP 117
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 68.9 bits (167), Expect = 4e-12
Identities = 55/162 (33%), Positives = 68/162 (41%), Gaps = 38/162 (23%)
Query: 76 NLVSMTVEGPPP--KDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRG 133
N+ S++ PP KD A P+ G A + A PA +P P
Sbjct: 611 NISSLSQLSPPNDHKDIHAALQPMEGMASNQ---QKALPPPPASIPPPPP---------- 657
Query: 134 VGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPP 193
P G G+++ A S AG P PP PPPP+ PPP GPPP
Sbjct: 658 ---------LPSGLGSLSPAPPMPPVS-AGPPLPPPPP---PPPPL----PPPSSAGPPP 700
Query: 194 GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGM 235
PP PP+ P P G PP PPPPG+ PPPPG+
Sbjct: 701 ---PPPPPPLPNSPAPPNPGGPPPA---PPPPGLAPPPPPGL 736
Score = 56.6 bits (135), Expect = 2e-08
Identities = 32/76 (42%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 169 PPGRGGPPPPM--GRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTP--MGMPPPGMRPPP 224
PP PPPP+ G G+ P PP PP+ PP PP P G PPP PP
Sbjct: 648 PPASIPPPPPLPSGLGSLSPAPPMPPVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPPPL 707
Query: 225 PGMRGPPPPGMRPPRP 240
P PP PG PP P
Sbjct: 708 PNSPAPPNPGGPPPAP 723
Score = 51.6 bits (122), Expect = 6e-07
Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 184 PPPGMMGPPPGMRPPMG-----PPMGIPPGRGTPMGMPPPGMRP-PPPGMRGPPPPGMRP 237
PPP + PPP + +G PPM P G P+ PPP P PPP GPPPP P
Sbjct: 647 PPPASIPPPPPLPSGLGSLSPAPPMP-PVSAGPPLPPPPPPPPPLPPPSSAGPPPPPPPP 705
Query: 238 PRP 240
P P
Sbjct: 706 PLP 708
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 68.9 bits (167), Expect = 4e-12
Identities = 61/196 (31%), Positives = 69/196 (35%), Gaps = 43/196 (21%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--VRGVGGPSQQV 141
GPP D G AG G A G P+G P PQ P G+ GP RG GP
Sbjct: 837 GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 896
Query: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP-----PGMMGP----- 191
P G V + G P P G+ GP G PP PG+ GP
Sbjct: 897 GFPGAAGRVGPPGSNGNPGPPGPPG--PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG 954
Query: 192 ---------PPGMRPPMGPP--------MGIP--------PGRGTPMGMPPPGMRPPPPG 226
P G P GP +G+P PG P G P P G
Sbjct: 955 EKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASG 1014
Query: 227 MRGPP----PPGMRPP 238
RGPP PPG+ P
Sbjct: 1015 DRGPPGPVGPPGLTGP 1030
Score = 65.5 bits (158), Expect = 4e-11
Identities = 61/182 (33%), Positives = 72/182 (39%), Gaps = 35/182 (19%)
Query: 83 EGPPPKD-----------TGIARVPLA-GAAGGPG----IGRAAGRGIPAGVPMPQAPAG 126
+GPP +D TG P A G G PG G+ RG AG P P+G
Sbjct: 1043 DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG-EAGAQGPMGPSG 1101
Query: 127 LAGPVRGVGGPSQ------QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
AG RG+ GP + P RG + G P P G G P G
Sbjct: 1102 PAG-ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG--PSGDQGASGPAG 1158
Query: 181 RGAP--PPGMMGPPP-----GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPP 233
P PPG +GP G+ P+GPP P GR G P P PPG GPP P
Sbjct: 1159 PSGPRGPPGPVGPSGKDGANGIPGPIGPPG--PRGRSGETGPAGPPGNPGPPGPPGPPGP 1216
Query: 234 GM 235
G+
Sbjct: 1217 GI 1218
Score = 59.7 bits (143), Expect = 2e-09
Identities = 59/188 (31%), Positives = 66/188 (35%), Gaps = 38/188 (20%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPP AG AG G G P G P GL GP+ GP
Sbjct: 743 QGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPI----GPPGPAG 798
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP----------------- 185
+G V A +A GAP + G GPP P G PP
Sbjct: 799 ANGEKGEVGPPGPAGSAGARGAPGE--RGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQ 856
Query: 186 ------PGMMGP--PPGMRPPMG--PPMGIPPGRGTP--MGMPPPGMRPPPPGMRG-PPP 232
PG GP PG + P G P G +G P G P R PPG G P P
Sbjct: 857 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP 916
Query: 233 PGMRPPRP 240
PG PP P
Sbjct: 917 PG--PPGP 922
Score = 59.3 bits (142), Expect = 3e-09
Identities = 66/187 (35%), Positives = 72/187 (38%), Gaps = 43/187 (22%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPG----------------IGRAAGRGIPA--GVPMPQAP 124
EG P KD G L G G PG G A RG P G P P
Sbjct: 776 EGAPGKDGGRG---LTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGP 832
Query: 125 AGLAGPVRGVGGPSQQVMTPQGR-GTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRG 182
AG AGP G P + QG G A A +GAP Q P G GP G
Sbjct: 833 AGFAGPPGADGQPGAK--GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 890
Query: 183 APP--------PGMMGPP--PGMRPPMGPPMGIPPGRGTPMG----MPPPGMRPPPPGMR 228
PP G +GPP G P GPP P G+ P G PPG R PG++
Sbjct: 891 GPPGATGFPGAAGRVGPPGSNGNPGPPGPPG--PSGKDGPKGARGDSGPPG-RAGEPGLQ 947
Query: 229 GPP-PPG 234
GP PPG
Sbjct: 948 GPAGPPG 954
Score = 57.4 bits (137), Expect = 1e-08
Identities = 51/158 (32%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP + G G PGI G P G P P P G GP G G
Sbjct: 438 GPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-GEEGKRGARGE 496
Query: 144 PQGRGTVAAAAAAATASIAGAPTQ----YPPGRGGPPPPMGRGAP-----PPGMMGPP-- 192
P G G + G P Q P G G P G P PG G P
Sbjct: 497 PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGL 556
Query: 193 PGMRPPMGPPMGI-PPGRGTPMGMPPPGMRPPPPGMRG 229
PG R G P P G+ P G P RP PPG +G
Sbjct: 557 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQG 594
Score = 55.8 bits (133), Expect = 3e-08
Identities = 56/156 (35%), Positives = 62/156 (39%), Gaps = 16/156 (10%)
Query: 84 GPPPKDTGIARVP-LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
GPP G A P L G AG PG G P+G P P GLAG VG P Q+
Sbjct: 936 GPP----GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR-- 989
Query: 143 TPQGRGTVAAAAAAATASIAGAP----TQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
RG + GAP + PPG GPP G A PG G P PP
Sbjct: 990 --GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG-PAGEPGREGSPGADGPP 1046
Query: 199 -MGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPP 233
G+ RG + PG P PPG GP P
Sbjct: 1047 GRDGAAGVKGDRGETGAVGAPG-APGPPGSPGPAGP 1081
Score = 54.3 bits (129), Expect = 9e-08
Identities = 51/146 (34%), Positives = 57/146 (39%), Gaps = 14/146 (9%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G AG PG+ +G G P P P GL G RG GP+ G A
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGE-RGRTGPAGAAGARGNDGQPGPAGPPGP 358
Query: 159 ASIAGAPTQYP--PGRGGPPPPMGRGAP-----PPGMMGPP--PGMRPPMGPP--MGIPP 207
AG P +P PG G P G P P G G P PG G P GIP
Sbjct: 359 VGPAGGP-GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPG 417
Query: 208 GRGTPMGMPPPGMRPPPPGMRGPPPP 233
+G+ G P P PG RGPP P
Sbjct: 418 AKGS-AGAPGIAGAPGFPGPRGPPGP 442
Score = 53.9 bits (128), Expect = 1e-07
Identities = 57/186 (30%), Positives = 61/186 (32%), Gaps = 50/186 (26%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG--------------------- 135
L G G G AAG G P P P G GP G G
Sbjct: 328 LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEG 387
Query: 136 --GPSQQVMTPQGRGTVAAA------------AAAATASIAGAPTQYPPGRGGPPPPMGR 181
GP + TP G A+ +A IAGAP PG GPP P G
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF--PGPRGPPGPQGA 445
Query: 182 GAP--PPGMMGPP--PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPP------ 231
P P G G P G + GP PG P G P P G RG P
Sbjct: 446 TGPLGPKGQTGEPGIAGFKGEQGPKG--EPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 503
Query: 232 -PPGMR 236
PPG R
Sbjct: 504 GPPGER 509
Score = 53.9 bits (128), Expect = 1e-07
Identities = 55/173 (31%), Positives = 63/173 (36%), Gaps = 36/173 (20%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQ--QVMTPQGRGTVAA---A 153
GA G G G P G P + P+GLAGP G P + + P RG A
Sbjct: 510 GAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 569
Query: 154 AAAATASIAGAPTQYPPGRGGPPPPMG-RGAP-------PPGMMGPP-----------PG 194
+GAP + GR GPP P G RG P P G G P PG
Sbjct: 570 GPQGKVGPSGAPGE--DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPG 627
Query: 195 MRP---------PMGPPMGI-PPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRP 237
+R GPP P G G P P PG GPP G +P
Sbjct: 628 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP 680
Score = 53.1 bits (126), Expect = 2e-07
Identities = 53/142 (37%), Positives = 57/142 (40%), Gaps = 18/142 (12%)
Query: 99 GAAGGPGI-GRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAA 157
G G PG GR G P G P P P G GP G+GG Q G A A
Sbjct: 141 GEKGAPGPRGRDGEPGTP-GNPGPPGPPGPPGPP-GLGGN----FAAQMAGGFDEKAGGA 194
Query: 158 TASIAGAPTQYPPGRGGPPPPMGRGAP-PPGMMGPP-----PGMRPPMGPPMGIPPGRGT 211
+ P P G GPP P G AP P G G P PG+ PMGP PPG
Sbjct: 195 QLGVMQGPMG-PMGPRGPPGPAG--APGPQGFQGNPGEPGEPGVSGPMGPRG--PPGPPG 249
Query: 212 PMGMPPPGMRPPPPGMRGPPPP 233
G +P G RGPP P
Sbjct: 250 KPGDDGEAGKPGKAGERGPPGP 271
Score = 53.1 bits (126), Expect = 2e-07
Identities = 52/156 (33%), Positives = 60/156 (38%), Gaps = 38/156 (24%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G+AG PGI A G P G P PQ G GP G P
Sbjct: 420 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEP--------------------- 458
Query: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPPP-------GMMGPPPGMRPPMGPP--MGIPPGR 209
IAG + P +G P P +GAP P G G P G+ P+GPP G P R
Sbjct: 459 -GIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGV-GPIGPPGERGAPGNR 515
Query: 210 GTP--MGMPPPGMRP---PPPGMRGPPPPGMRPPRP 240
G P G+ P P P G+ GP P RP
Sbjct: 516 GFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 551
Score = 53.1 bits (126), Expect = 2e-07
Identities = 55/173 (31%), Positives = 61/173 (35%), Gaps = 38/173 (21%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--------------------VRGVGGPS 138
GAAG PG AG G P P GL GP G+ GP
Sbjct: 639 GAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPR 698
Query: 139 QQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGAPP-----PGMMGP- 191
+ P RG+ A + G P T P G GP P G PP PG G
Sbjct: 699 GERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA 758
Query: 192 ----PPGMRPPMGP--PMGIP---PGRGT--PMGMPPPGMRPPPPGMRGPPPP 233
P G R +G P G P GRG P+G P P G GPP P
Sbjct: 759 GIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGP 811
Score = 52.4 bits (124), Expect = 4e-07
Identities = 54/172 (31%), Positives = 58/172 (33%), Gaps = 35/172 (20%)
Query: 92 IARVPLAGAAGGPGIGRAAGRGI-------PAGVPMPQAPAGLAGPVRGVGGPSQQVMTP 144
I LA A+G PG G P G P PQ PAG GP RG G + P
Sbjct: 88 ICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGP-RGDRGDKGEKGAP 146
Query: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG----------------RGAPPPGM 188
RG PPG GPP P G G G+
Sbjct: 147 GPRGRDGEPGTPGNPG--------PPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGV 198
Query: 189 MGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPPRP 240
M P G P GPP P G P G P PG+ GP P PP P
Sbjct: 199 MQGPMGPMGPRGPPG--PAGAPGPQGFQGNPGEPGEPGVSGPMGP-RGPPGP 247
Score = 52.4 bits (124), Expect = 4e-07
Identities = 48/147 (32%), Positives = 56/147 (38%), Gaps = 35/147 (23%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG+ G+ G P PAG AG RG A +
Sbjct: 621 GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGE----------------RGEQGAPGPSGF 664
Query: 159 ASIAGAPTQYPPGRGGPPPPMG--RGAPPPGMMGPP-----PGMRPPMGP-----PMGIP 206
+ G P PPG GG P G A PG++GP PG R G P G+P
Sbjct: 665 QGLPGPPG--PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 722
Query: 207 PGRGTPMGMPPPGMRPP--PPGMRGPP 231
GTP P G P PPG +GPP
Sbjct: 723 ---GTPGTDGPKGASGPAGPPGAQGPP 746
Score = 49.7 bits (117), Expect = 2e-06
Identities = 50/163 (30%), Positives = 61/163 (37%), Gaps = 26/163 (15%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG G+ P+G P G GP +G G + P +G A
Sbjct: 561 GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP-QGARGQPGVMGFPGPKGANGEPGKAGE 619
Query: 159 ASIAGAP-------TQYPPGRGGPPPPMG-------RGAPPPGMMGPPPGMRPPMGPPM- 203
+ GAP G GPP P G +GAP P PG P GPP
Sbjct: 620 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPG---PPGPPGE 676
Query: 204 -GIPPGRGTPMGMPPPGMRPPP-----PGMRGPP-PPGMRPPR 239
G P +G P PG+ P PG RG P G++ PR
Sbjct: 677 GGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR 719
Score = 45.8 bits (107), Expect = 3e-05
Identities = 54/162 (33%), Positives = 61/162 (37%), Gaps = 20/162 (12%)
Query: 86 PPKDTGIARVPLAGA----AGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ- 140
PP G +AG AGG +G G P G P PAG GP G P +
Sbjct: 172 PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 231
Query: 141 ---VMTPQG-RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG-RGAP-PPGMMGPP-- 192
V P G RG AG P + G GPP P G RG P PG+ G
Sbjct: 232 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK--AGERGPPGPQGARGFPGTPGLPGVKGH 289
Query: 193 ---PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPP 231
PG+ G G P +G G P P P G RG P
Sbjct: 290 RGYPGLDGAKG-EAGAPGVKG-ESGSPGENGSPGPMGPRGLP 329
Score = 41.2 bits (95), Expect = 8e-04
Identities = 59/202 (29%), Positives = 65/202 (32%), Gaps = 52/202 (25%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP----- 137
EGPP + + G G G G P+G P Q G +G RG GP
Sbjct: 968 EGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD-RGPPGPVGPPG 1026
Query: 138 ------------SQQVMTPQGR-GTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGR-- 181
S P GR G GAP PPG GP P G+
Sbjct: 1027 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1086
Query: 182 ---GAPPPGMMGP--PPGMRPPMGP--PMGIPPGRGTP--------------MGMP-PPG 219
A G MGP P G R GP P G G P G+P PPG
Sbjct: 1087 DRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG 1146
Query: 220 MR--------PPPPGMRGPPPP 233
P G RGPP P
Sbjct: 1147 PSGDQGASGPAGPSGPRGPPGP 1168
Score = 38.5 bits (88), Expect = 0.005
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP-----VRGVGGPSQQVMTPQGRGTVA 151
L G G PG G PAG P+ P G GP G+ GP + P RG
Sbjct: 1138 LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGP---IGPPGPRGR-- 1192
Query: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
+ AG P PG GPP P G G G P + P
Sbjct: 1193 ----SGETGPAGPPGN--PGPPGPPGPPGPGIDMSAFAGLGPREKGP 1233
Score = 37.0 bits (84), Expect = 0.015
Identities = 50/159 (31%), Positives = 58/159 (36%), Gaps = 47/159 (29%)
Query: 82 VEGP--PPKDTGIARVP----LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG 135
++GP P D G A P L G G G+ G P+G PAG +GP RG
Sbjct: 1108 IQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP-RGPP 1166
Query: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA------PPPGMM 189
GP + P G+ PG GPP P GR PP
Sbjct: 1167 GP----VGPSGKDGANGI----------------PGPIGPPGPRGRSGETGPAGPPGNP- 1205
Query: 190 GPPPGMRPPMGPPMGIPPGRGTPM----GMPPPGMRPPP 224
GPP GPP PPG G M G+ P P P
Sbjct: 1206 GPP-------GPPG--PPGPGIDMSAFAGLGPREKGPDP 1235
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 68.9 bits (167), Expect = 4e-12
Identities = 61/196 (31%), Positives = 69/196 (35%), Gaps = 43/196 (21%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP--VRGVGGPSQQV 141
GPP D G AG G A G P+G P PQ P G+ GP RG GP
Sbjct: 768 GPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 827
Query: 142 MTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP-----PGMMGP----- 191
P G V + G P P G+ GP G PP PG+ GP
Sbjct: 828 GFPGAAGRVGPPGSNGNPGPPGPPG--PSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPG 885
Query: 192 ---------PPGMRPPMGPP--------MGIP--------PGRGTPMGMPPPGMRPPPPG 226
P G P GP +G+P PG P G P P G
Sbjct: 886 EKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASG 945
Query: 227 MRGPP----PPGMRPP 238
RGPP PPG+ P
Sbjct: 946 DRGPPGPVGPPGLTGP 961
Score = 65.5 bits (158), Expect = 4e-11
Identities = 61/182 (33%), Positives = 72/182 (39%), Gaps = 35/182 (19%)
Query: 83 EGPPPKD-----------TGIARVPLA-GAAGGPG----IGRAAGRGIPAGVPMPQAPAG 126
+GPP +D TG P A G G PG G+ RG AG P P+G
Sbjct: 974 DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRG-EAGAQGPMGPSG 1032
Query: 127 LAGPVRGVGGPSQ------QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180
AG RG+ GP + P RG + G P P G G P G
Sbjct: 1033 PAG-ARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG--PSGDQGASGPAG 1089
Query: 181 RGAP--PPGMMGPPP-----GMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPP 233
P PPG +GP G+ P+GPP P GR G P P PPG GPP P
Sbjct: 1090 PSGPRGPPGPVGPSGKDGANGIPGPIGPPG--PRGRSGETGPAGPPGNPGPPGPPGPPGP 1147
Query: 234 GM 235
G+
Sbjct: 1148 GI 1149
Score = 59.7 bits (143), Expect = 2e-09
Identities = 59/188 (31%), Positives = 66/188 (35%), Gaps = 38/188 (20%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
+GPP AG AG G G P G P GL GP+ GP
Sbjct: 674 QGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPI----GPPGPAG 729
Query: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPP----------------- 185
+G V A +A GAP + G GPP P G PP
Sbjct: 730 ANGEKGEVGPPGPAGSAGARGAPGE--RGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQ 787
Query: 186 ------PGMMGP--PPGMRPPMG--PPMGIPPGRGTP--MGMPPPGMRPPPPGMRG-PPP 232
PG GP PG + P G P G +G P G P R PPG G P P
Sbjct: 788 KGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGP 847
Query: 233 PGMRPPRP 240
PG PP P
Sbjct: 848 PG--PPGP 853
Score = 59.3 bits (142), Expect = 3e-09
Identities = 66/187 (35%), Positives = 72/187 (38%), Gaps = 43/187 (22%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPG----------------IGRAAGRGIPA--GVPMPQAP 124
EG P KD G L G G PG G A RG P G P P
Sbjct: 707 EGAPGKDGGRG---LTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGP 763
Query: 125 AGLAGPVRGVGGPSQQVMTPQGR-GTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRG 182
AG AGP G P + QG G A A +GAP Q P G GP G
Sbjct: 764 AGFAGPPGADGQPGAK--GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQ 821
Query: 183 APP--------PGMMGPP--PGMRPPMGPPMGIPPGRGTPMG----MPPPGMRPPPPGMR 228
PP G +GPP G P GPP P G+ P G PPG R PG++
Sbjct: 822 GPPGATGFPGAAGRVGPPGSNGNPGPPGPPG--PSGKDGPKGARGDSGPPG-RAGEPGLQ 878
Query: 229 GPP-PPG 234
GP PPG
Sbjct: 879 GPAGPPG 885
Score = 57.4 bits (137), Expect = 1e-08
Identities = 51/158 (32%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 84 GPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMT 143
GPP + G G PGI G P G P P P G GP G G
Sbjct: 369 GPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPA-GEEGKRGARGE 427
Query: 144 PQGRGTVAAAAAAATASIAGAPTQ----YPPGRGGPPPPMGRGAP-----PPGMMGPP-- 192
P G G + G P Q P G G P G P PG G P
Sbjct: 428 PGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGL 487
Query: 193 PGMRPPMGPPMGI-PPGRGTPMGMPPPGMRPPPPGMRG 229
PG R G P P G+ P G P RP PPG +G
Sbjct: 488 PGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQG 525
Score = 55.8 bits (133), Expect = 3e-08
Identities = 56/156 (35%), Positives = 62/156 (39%), Gaps = 16/156 (10%)
Query: 84 GPPPKDTGIARVP-LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142
GPP G A P L G AG PG G P+G P P GLAG VG P Q+
Sbjct: 867 GPP----GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQR-- 920
Query: 143 TPQGRGTVAAAAAAATASIAGAP----TQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
RG + GAP + PPG GPP G A PG G P PP
Sbjct: 921 --GERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTG-PAGEPGREGSPGADGPP 977
Query: 199 -MGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPP 233
G+ RG + PG P PPG GP P
Sbjct: 978 GRDGAAGVKGDRGETGAVGAPG-APGPPGSPGPAGP 1012
Score = 54.3 bits (129), Expect = 9e-08
Identities = 51/146 (34%), Positives = 57/146 (39%), Gaps = 14/146 (9%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G AG PG+ +G G P P P GL G RG GP+ G A
Sbjct: 231 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGE-RGRTGPAGAAGARGNDGQPGPAGPPGP 289
Query: 159 ASIAGAPTQYP--PGRGGPPPPMGRGAP-----PPGMMGPP--PGMRPPMGPP--MGIPP 207
AG P +P PG G P G P P G G P PG G P GIP
Sbjct: 290 VGPAGGP-GFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPG 348
Query: 208 GRGTPMGMPPPGMRPPPPGMRGPPPP 233
+G+ G P P PG RGPP P
Sbjct: 349 AKGS-AGAPGIAGAPGFPGPRGPPGP 373
Score = 53.9 bits (128), Expect = 1e-07
Identities = 57/186 (30%), Positives = 61/186 (32%), Gaps = 50/186 (26%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG--------------------- 135
L G G G AAG G P P P G GP G G
Sbjct: 259 LPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEG 318
Query: 136 --GPSQQVMTPQGRGTVAAA------------AAAATASIAGAPTQYPPGRGGPPPPMGR 181
GP + TP G A+ +A IAGAP PG GPP P G
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGIAGAPGF--PGPRGPPGPQGA 376
Query: 182 GAP--PPGMMGPP--PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPP------ 231
P P G G P G + GP PG P G P P G RG P
Sbjct: 377 TGPLGPKGQTGEPGIAGFKGEQGPKG--EPGPAGPQGAPGPAGEEGKRGARGEPGGVGPI 434
Query: 232 -PPGMR 236
PPG R
Sbjct: 435 GPPGER 440
Score = 53.9 bits (128), Expect = 1e-07
Identities = 55/173 (31%), Positives = 63/173 (36%), Gaps = 36/173 (20%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQ--QVMTPQGRGTVAA---A 153
GA G G G P G P + P+GLAGP G P + + P RG A
Sbjct: 441 GAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDA 500
Query: 154 AAAATASIAGAPTQYPPGRGGPPPPMG-RGAP-------PPGMMGPP-----------PG 194
+GAP + GR GPP P G RG P P G G P PG
Sbjct: 501 GPQGKVGPSGAPGE--DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPG 558
Query: 195 MRP---------PMGPPMGI-PPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRP 237
+R GPP P G G P P PG GPP G +P
Sbjct: 559 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKP 611
Score = 53.1 bits (126), Expect = 2e-07
Identities = 52/156 (33%), Positives = 60/156 (38%), Gaps = 38/156 (24%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G+AG PGI A G P G P PQ G GP G P
Sbjct: 351 GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEP--------------------- 389
Query: 159 ASIAGAPTQYPPGRGGPPPPMGRGAPPP-------GMMGPPPGMRPPMGPP--MGIPPGR 209
IAG + P +G P P +GAP P G G P G+ P+GPP G P R
Sbjct: 390 -GIAGFKGEQGP-KGEPGPAGPQGAPGPAGEEGKRGARGEPGGV-GPIGPPGERGAPGNR 446
Query: 210 GTP--MGMPPPGMRP---PPPGMRGPPPPGMRPPRP 240
G P G+ P P P G+ GP P RP
Sbjct: 447 GFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRP 482
Score = 53.1 bits (126), Expect = 2e-07
Identities = 61/184 (33%), Positives = 69/184 (37%), Gaps = 32/184 (17%)
Query: 82 VEGPPPKD--TGIARVP-LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP-------- 130
+ G P KD TG A P AG AG G A G G+P P P G G
Sbjct: 559 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPG 618
Query: 131 ---VRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGRGAPP- 185
G+ GP + P RG+ A + G P T P G GP P G PP
Sbjct: 619 EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPG 678
Query: 186 ----PGMMGP-----PPGMRPPMGP--PMGIP---PGRGT--PMGMPPPGMRPPPPGMRG 229
PG G P G R +G P G P GRG P+G P P G G
Sbjct: 679 LQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVG 738
Query: 230 PPPP 233
PP P
Sbjct: 739 PPGP 742
Score = 52.4 bits (124), Expect = 4e-07
Identities = 48/147 (32%), Positives = 56/147 (38%), Gaps = 35/147 (23%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG+ G+ G P PAG AG RG A +
Sbjct: 552 GLPGAPGLRGLPGKDGETGAAGPPGPAGPAGE----------------RGEQGAPGPSGF 595
Query: 159 ASIAGAPTQYPPGRGGPPPPMG--RGAPPPGMMGPP-----PGMRPPMGP-----PMGIP 206
+ G P PPG GG P G A PG++GP PG R G P G+P
Sbjct: 596 QGLPGPPG--PPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLP 653
Query: 207 PGRGTPMGMPPPGMRPP--PPGMRGPP 231
GTP P G P PPG +GPP
Sbjct: 654 ---GTPGTDGPKGASGPAGPPGAQGPP 677
Score = 51.6 bits (122), Expect = 6e-07
Identities = 46/142 (32%), Positives = 49/142 (34%), Gaps = 28/142 (19%)
Query: 115 PAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGG 174
P G P PQ PAG GP RG G + P RG PPG G
Sbjct: 49 PKGPPGPQGPAGEQGP-RGDRGDKGEKGAPGPRGRDGEPGTPGNPG--------PPGPPG 99
Query: 175 PPPPMG----------------RGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPP 218
PP P G G G+M P G P GPP P G P G
Sbjct: 100 PPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPG--PAGAPGPQGFQGN 157
Query: 219 GMRPPPPGMRGPPPPGMRPPRP 240
P PG+ GP P PP P
Sbjct: 158 PGEPGEPGVSGPMGP-RGPPGP 178
Score = 49.7 bits (117), Expect = 2e-06
Identities = 50/163 (30%), Positives = 61/163 (37%), Gaps = 26/163 (15%)
Query: 99 GAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAAT 158
G G PG G+ P+G P G GP +G G + P +G A
Sbjct: 492 GLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGP-QGARGQPGVMGFPGPKGANGEPGKAGE 550
Query: 159 ASIAGAP-------TQYPPGRGGPPPPMG-------RGAPPPGMMGPPPGMRPPMGPPM- 203
+ GAP G GPP P G +GAP P PG P GPP
Sbjct: 551 KGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPG---PPGPPGE 607
Query: 204 -GIPPGRGTPMGMPPPGMRPPP-----PGMRGPP-PPGMRPPR 239
G P +G P PG+ P PG RG P G++ PR
Sbjct: 608 GGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPR 650
Score = 48.9 bits (115), Expect = 4e-06
Identities = 62/212 (29%), Positives = 75/212 (35%), Gaps = 47/212 (22%)
Query: 40 LILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP-PKDTGIARVPLA 98
++ C + R+ PK K + K ++G +GPP P+ + P
Sbjct: 20 VLRCQGQDVRQPGPKGQKGEPGDIKDIVG-------------PKGPPGPQGPAGEQGPRG 66
Query: 99 -----GAAGGPGI-GRAAGRGIPA-----GVPMPQAPAGLAGPVRGVGGPSQQVMTPQGR 147
G G PG GR G P G P P P GL G Q
Sbjct: 67 DRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGN-----------FAAQMA 115
Query: 148 GTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP-PPGMMGPP-----PGMRPPMGP 201
G A A + P P G GPP P GAP P G G P PG+ PMGP
Sbjct: 116 GGFDEKAGGAQLGVMQGP-MGPMGPRGPPGP--AGAPGPQGFQGNPGEPGEPGVSGPMGP 172
Query: 202 PMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPP 233
PPG G +P G RGPP P
Sbjct: 173 RG--PPGPPGKPGDDGEAGKPGKAGERGPPGP 202
Score = 45.8 bits (107), Expect = 3e-05
Identities = 54/162 (33%), Positives = 61/162 (37%), Gaps = 20/162 (12%)
Query: 86 PPKDTGIARVPLAGA----AGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ- 140
PP G +AG AGG +G G P G P PAG GP G P +
Sbjct: 103 PPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPG 162
Query: 141 ---VMTPQG-RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG-RGAP-PPGMMGPP-- 192
V P G RG AG P + G GPP P G RG P PG+ G
Sbjct: 163 EPGVSGPMGPRGPPGPPGKPGDDGEAGKPGK--AGERGPPGPQGARGFPGTPGLPGVKGH 220
Query: 193 ---PGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPP 231
PG+ G G P +G G P P P G RG P
Sbjct: 221 RGYPGLDGAKG-EAGAPGVKG-ESGSPGENGSPGPMGPRGLP 260
Score = 41.2 bits (95), Expect = 8e-04
Identities = 59/202 (29%), Positives = 65/202 (32%), Gaps = 52/202 (25%)
Query: 83 EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGP----- 137
EGPP + + G G G G P+G P Q G +G RG GP
Sbjct: 899 EGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGD-RGPPGPVGPPG 957
Query: 138 ------------SQQVMTPQGR-GTVAAAAAAATASIAGAP-TQYPPGRGGPPPPMGR-- 181
S P GR G GAP PPG GP P G+
Sbjct: 958 LTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQG 1017
Query: 182 ---GAPPPGMMGP--PPGMRPPMGP--PMGIPPGRGTP--------------MGMP-PPG 219
A G MGP P G R GP P G G P G+P PPG
Sbjct: 1018 DRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPG 1077
Query: 220 MR--------PPPPGMRGPPPP 233
P G RGPP P
Sbjct: 1078 PSGDQGASGPAGPSGPRGPPGP 1099
Score = 38.5 bits (88), Expect = 0.005
Identities = 34/107 (31%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 97 LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGP-----VRGVGGPSQQVMTPQGRGTVA 151
L G G PG G PAG P+ P G GP G+ GP + P RG
Sbjct: 1069 LQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGP---IGPPGPRGR-- 1123
Query: 152 AAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
+ AG P PG GPP P G G G P + P
Sbjct: 1124 ----SGETGPAGPPGN--PGPPGPPGPPGPGIDMSAFAGLGPREKGP 1164
Score = 37.0 bits (84), Expect = 0.015
Identities = 50/159 (31%), Positives = 58/159 (36%), Gaps = 47/159 (29%)
Query: 82 VEGP--PPKDTGIARVP----LAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVG 135
++GP P D G A P L G G G+ G P+G PAG +GP RG
Sbjct: 1039 IQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGP-RGPP 1097
Query: 136 GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA------PPPGMM 189
GP + P G+ PG GPP P GR PP
Sbjct: 1098 GP----VGPSGKDGANGI----------------PGPIGPPGPRGRSGETGPAGPPGNP- 1136
Query: 190 GPPPGMRPPMGPPMGIPPGRGTPM----GMPPPGMRPPP 224
GPP GPP PPG G M G+ P P P
Sbjct: 1137 GPP-------GPPG--PPGPGIDMSAFAGLGPREKGPDP 1166
Score = 33.9 bits (76), Expect = 0.13
Identities = 29/70 (41%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 171 GRGGPPPPMGRGAPPPGMMGP--PPGMRPPMGPPMGIPPGR----GTPMGMPPPGMRPPP 224
G GPP P G P G GP G + G P P GR GTP PPG P
Sbjct: 48 GPKGPPGPQG----PAGEQGPRGDRGDKGEKGAPG--PRGRDGEPGTPGNPGPPG----P 97
Query: 225 PGMRGPPPPG 234
PG GPP G
Sbjct: 98 PGPPGPPGLG 107
>gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo
sapiens]
Length = 159
Score = 68.9 bits (167), Expect = 4e-12
Identities = 48/115 (41%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 139 QQVMTPQGRGTVAAAAAA-ATASIAGAPTQYPPGRGG--PPPPMGRGAPPPGMMGPPPGM 195
Q+ M Q + + AA I P PP G PPPP G P PGMM P
Sbjct: 39 QKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMG 98
Query: 196 RPPMGPPMGIPPGRGTPMGMPPPGMRPP----------PPGMRGPPPPGMRPPRP 240
PPM P MG PP P+G P PGMRPP PP MR P P M P RP
Sbjct: 99 GPPMMPMMGPPPPGMMPVG-PAPGMRPPMGGHMPMMPGPPMMRPPARPMMVPTRP 152
Score = 66.6 bits (161), Expect = 2e-11
Identities = 44/101 (43%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 143 TPQGRGTVAAAAAAATASIAGAPT---QYPPGRGGPPPPMGRGAPPPGMM--GPPPGMRP 197
TP A A S+ G P P GGPP G PPPGMM GP PGMRP
Sbjct: 65 TPFSAPPPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRP 124
Query: 198 PMGPPMGIPPGRGTPMGMPPPGMRPPPPGMRGPPPPGMRPP 238
PMG M + PG PP MRPP M P PGM P
Sbjct: 125 PMGGHMPMMPG--------PPMMRPPARPMMVPTRPGMTRP 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.142 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,616,330
Number of Sequences: 37866
Number of extensions: 1693618
Number of successful extensions: 46122
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 1868
Number of HSP's that attempted gapping in prelim test: 10595
Number of HSP's gapped (non-prelim): 14931
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.