SF1 27969

Name: SF1	Sequence: fasta or formatted (638aa)		NCBI GI: 42544125
Description: splicing factor 1 isoform 2		Referenced in: Capping and Splicing
Other entries for this name: alt prot [548aa] splicing factor 1 isoform 3 alt prot [80aa] splicing factor 1 isoform 4 alt prot [639aa] splicing factor 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 37 5 C cysteine 0.6 4 1 D aspartate 3.4 22 2 E glutamate 5.0 32 3 F phenylalanine 1.3 8 1 G glycine 10.0 64 3 H histidine 2.4 15 2 I isoleucine 3.3 21 1 K lysine 4.4 28 2 L leucine 6.0 38 2 M methionine 4.4 28 2 N asparagine 4.1 26 2 P proline 19.1 122 9 Q glutamine 6.3 40 6 R arginine 5.5 35 1 S serine 6.3 40 3 T threonine 6.3 40 6 V valine 3.1 20 1 W tryptophan 1.6 10 2 Y tyrosine 1.3 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 splicing factor 1 isoform 2 SF1 0.931 splicing factor 1 isoform 1 SF1 0.818 splicing factor 1 isoform 3 FMN2 0.067 formin 2 SF1 0.065 splicing factor 1 isoform 4 PRB2 0.065 proline-rich protein BstNI subfamily 2 PRB1 0.065 proline-rich protein BstNI subfamily 1 isoform 1 pre... RERE 0.061 atrophin-1 like protein isoform b RERE 0.061 atrophin-1 like protein isoform a RERE 0.061 atrophin-1 like protein isoform a WIPF1 0.060 WAS/WASL interacting protein family, member 1 [Homo... WIPF1 0.060 WAS/WASL interacting protein family, member 1 SFPQ 0.058 splicing factor proline/glutamine rich (polypyrimidin... NACA 0.057 nascent polypeptide-associated complex alpha subuni... QKI 0.056 quaking homolog, KH domain RNA binding isoform HQK-7... QKI 0.056 quaking homolog, KH domain RNA binding isoform HQK-7... QKI 0.056 quaking homolog, KH domain RNA binding isoform HQK-6... QKI 0.056 quaking homolog, KH domain RNA binding isoform HQK-5... CPSF6 0.055 cleavage and polyadenylation specific factor 6, 68 ... SF3B4 0.055 splicing factor 3b, subunit 4 SF3A2 0.055 splicing factor 3a, subunit 2 PRB4 0.054 proline-rich protein BstNI subfamily 4 precursor [Ho... PRB3 0.054 proline-rich protein BstNI subfamily 3 precursor [H... WIPF2 0.052 WIRE protein WASF2 0.050 WAS protein family, member 2 BRD4 0.050 bromodomain-containing protein 4 isoform long MLL5 0.049 myeloid/lymphoid or mixed-lineage leukemia 5 MLL5 0.049 myeloid/lymphoid or mixed-lineage leukemia 5 RAPH1 0.048 Ras association and pleckstrin homology domains 1 is... FLJ22184 0.046 PREDICTED: hypothetical protein FLJ22184 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.