SF1 27971

Name: SF1	Sequence: fasta or formatted (639aa)		NCBI GI: 42544130
Description: splicing factor 1 isoform 1		Referenced in: Capping and Splicing
Other entries for this name: alt prot [548aa] splicing factor 1 isoform 3 alt prot [638aa] splicing factor 1 isoform 2 alt prot [80aa] splicing factor 1 isoform 4
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 38 5 C cysteine 0.6 4 1 D aspartate 3.3 21 2 E glutamate 4.7 30 3 F phenylalanine 1.3 8 1 G glycine 9.7 62 3 H histidine 2.2 14 2 I isoleucine 3.1 20 1 K lysine 4.2 27 2 L leucine 5.6 36 2 M methionine 5.3 34 2 N asparagine 4.4 28 2 P proline 20.8 133 9 Q glutamine 5.9 38 6 R arginine 4.9 31 1 S serine 6.1 39 3 T threonine 6.1 39 6 V valine 3.3 21 1 W tryptophan 1.1 7 1 Y tyrosine 1.4 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 splicing factor 1 isoform 1 SF1 0.929 splicing factor 1 isoform 2 SF1 0.816 splicing factor 1 isoform 3 FMN2 0.083 formin 2 PRB2 0.076 proline-rich protein BstNI subfamily 2 PRB1 0.071 proline-rich protein BstNI subfamily 1 isoform 1 pre... WIPF1 0.068 WAS/WASL interacting protein family, member 1 [Homo... WIPF1 0.068 WAS/WASL interacting protein family, member 1 RERE 0.067 atrophin-1 like protein isoform b RERE 0.067 atrophin-1 like protein isoform a RERE 0.067 atrophin-1 like protein isoform a SF1 0.065 splicing factor 1 isoform 4 FLJ22184 0.065 PREDICTED: hypothetical protein FLJ22184 SFPQ 0.062 splicing factor proline/glutamine rich (polypyrimidin... PRB3 0.061 proline-rich protein BstNI subfamily 3 precursor [H... DIAPH1 0.060 diaphanous 1 isoform 2 DIAPH1 0.060 diaphanous 1 isoform 1 RAPH1 0.060 Ras association and pleckstrin homology domains 1 is... CCNK 0.060 cyclin K isoform 1 FLJ22184 0.058 PREDICTED: hypothetical protein LOC80164 PRB4 0.058 proline-rich protein BstNI subfamily 4 precursor [Ho... CPSF6 0.057 cleavage and polyadenylation specific factor 6, 68 ... NACA 0.057 nascent polypeptide-associated complex alpha subuni... SF3A2 0.056 splicing factor 3a, subunit 2 QKI 0.056 quaking homolog, KH domain RNA binding isoform HQK-7... QKI 0.056 quaking homolog, KH domain RNA binding isoform HQK-7... QKI 0.056 quaking homolog, KH domain RNA binding isoform HQK-6... QKI 0.056 quaking homolog, KH domain RNA binding isoform HQK-5... WIPF2 0.056 WIRE protein FLJ22184 0.055 PREDICTED: hypothetical protein FLJ22184 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.