SNRPB 26783

Name: SNRPB	Sequence: fasta or formatted (240aa)		NCBI GI: 38150007
Description: small nuclear ribonucleoprotein polypeptide B/B' isoform B'		Referenced in: Small RNAs in RNA Processing Capping and Splicing
Other entries for this name: alt prot [231aa] small nuclear ribonucleoprotein polypeptide B/B' isoform B
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.6 23 7 C cysteine 1.2 3 1 D aspartate 2.5 6 1 E glutamate 2.5 6 2 F phenylalanine 1.7 4 1 G glycine 16.7 40 2 H histidine 0.8 2 1 I isoleucine 4.6 11 1 K lysine 4.2 10 1 L leucine 4.6 11 2 M methionine 7.5 18 2 N asparagine 1.2 3 1 P proline 19.6 47 4 Q glutamine 3.3 8 2 R arginine 8.3 20 1 S serine 2.5 6 2 T threonine 3.8 9 1 V valine 4.6 11 1 W tryptophan 0.0 0 0 Y tyrosine 0.8 2 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 small nuclear ribonucleoprotein polypeptide B/B' iso... SNRPB 0.944 small nuclear ribonucleoprotein polypeptide B/B' isof... SNRPN 0.944 small nuclear ribonucleoprotein polypeptide N SNRPN 0.944 small nuclear ribonucleoprotein polypeptide N SNRPN 0.944 small nuclear ribonucleoprotein polypeptide N SNRPN 0.944 small nuclear ribonucleoprotein polypeptide N SNRPN 0.944 small nuclear ribonucleoprotein polypeptide N LOC100133224 0.433 PREDICTED: similar to hCG2041320 LOC100133224 0.433 PREDICTED: similar to hCG2041320 LOC100133224 0.433 PREDICTED: similar to hCG2041320 SF3B4 0.114 splicing factor 3b, subunit 4 WBP11 0.104 WW domain binding protein 11 FMN2 0.099 formin 2 COL22A1 0.099 collagen, type XXII, alpha 1 SF3A2 0.097 splicing factor 3a, subunit 2 PRB2 0.093 proline-rich protein BstNI subfamily 2 PRB1 0.093 proline-rich protein BstNI subfamily 1 isoform 1 pre... PRH1 0.093 proline-rich protein HaeIII subfamily 1 SAMD1 0.093 sterile alpha motif domain containing 1 PRH2 0.093 proline-rich protein HaeIII subfamily 2 PRH2 0.093 proline-rich protein HaeIII subfamily 2 SF1 0.093 splicing factor 1 isoform 3 SF1 0.093 splicing factor 1 isoform 2 SF1 0.093 splicing factor 1 isoform 1 SFPQ 0.091 splicing factor proline/glutamine rich (polypyrimidin... PRB3 0.091 proline-rich protein BstNI subfamily 3 precursor [H... FMN1 0.091 formin 1 COL2A1 0.091 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.091 collagen, type II, alpha 1 isoform 2 precursor [Hom... SNRPC 0.091 small nuclear ribonucleoprotein polypeptide C Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.