Search of human proteins with 31543063

Search of human proteins with 31543063

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31543063 glycerate kinase isoform 1 [Homo sapiens]
         (523 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31543063 glycerate kinase isoform 1 [Homo sapiens]                1018   0.0  
gi|222418771 glycerate kinase isoform 2 [Homo sapiens]                340   1e-93
gi|14917113 signal recognition particle receptor, beta subunit [...    34   0.37 
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ...    33   0.49 
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ...    33   0.49 
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ...    33   0.49 
gi|85540447 solute carrier family 26, member 11 [Homo sapiens]         32   1.1  
gi|6005930 UDP glycosyltransferase 1 family, polypeptide A4 prec...    32   1.8  
gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]            31   2.4  
gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo ...    31   2.4  
gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo ...    31   2.4  
gi|4506453 retinol-binding protein 3 precursor [Homo sapiens]          31   2.4  
gi|124494247 myosin IC isoform b [Homo sapiens]                        30   4.1  
gi|124494238 myosin IC isoform a [Homo sapiens]                        30   4.1  
gi|124494240 myosin IC isoform c [Homo sapiens]                        30   4.1  
gi|169214874 PREDICTED: hypothetical protein [Homo sapiens]            30   5.4  
gi|169215109 PREDICTED: hypothetical protein [Homo sapiens]            30   5.4  
gi|169214604 PREDICTED: hypothetical protein [Homo sapiens]            30   5.4  
gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H...    30   7.0  
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H...    30   7.0  
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          30   7.0  
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          30   7.0  
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          30   7.0  
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         30   7.0  
gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]            29   9.2  
gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [H...    29   9.2  
gi|169216749 PREDICTED: similar to Putative paraneoplastic antig...    29   9.2  
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         29   9.2  

>gi|31543063 glycerate kinase isoform 1 [Homo sapiens]
          Length = 523

 Score = 1018 bits (2631), Expect = 0.0
 Identities = 523/523 (100%), Positives = 523/523 (100%)

Query: 1   MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESAVGAVLPGPMLHRALS 60
           MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESAVGAVLPGPMLHRALS
Sbjct: 1   MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESAVGAVLPGPMLHRALS 60

Query: 61  LDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAM 120
           LDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAM
Sbjct: 61  LDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAM 120

Query: 121 ERAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIQQLAEGLTADDLLLVLISGGGS 180
           ERAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIQQLAEGLTADDLLLVLISGGGS
Sbjct: 121 ERAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIQQLAEGLTADDLLLVLISGGGS 180

Query: 181 ALLPAPIPPVTLEEKQTLTRLLAARGATIQELNTIRKALSQLKGGGLAQAAYPAQVVSLI 240
           ALLPAPIPPVTLEEKQTLTRLLAARGATIQELNTIRKALSQLKGGGLAQAAYPAQVVSLI
Sbjct: 181 ALLPAPIPPVTLEEKQTLTRLLAARGATIQELNTIRKALSQLKGGGLAQAAYPAQVVSLI 240

Query: 241 LSDVVGDPVEVIASGPTVASSHNVQDCLHILNRYGLRAALPRSVKTVLSRADSDPHGPHT 300
           LSDVVGDPVEVIASGPTVASSHNVQDCLHILNRYGLRAALPRSVKTVLSRADSDPHGPHT
Sbjct: 241 LSDVVGDPVEVIASGPTVASSHNVQDCLHILNRYGLRAALPRSVKTVLSRADSDPHGPHT 300

Query: 301 CGHVLNVIIGSNVLALAEAQRQAEALGYQAVVLSAAMQGDVKSMAQFYGLLAHVARTRLT 360
           CGHVLNVIIGSNVLALAEAQRQAEALGYQAVVLSAAMQGDVKSMAQFYGLLAHVARTRLT
Sbjct: 301 CGHVLNVIIGSNVLALAEAQRQAEALGYQAVVLSAAMQGDVKSMAQFYGLLAHVARTRLT 360

Query: 361 PSMAGASVEEDAQLHELAAELQIPDLQLEEALETMAWGRGPVCLLAGGEPTVQLQGSGRG 420
           PSMAGASVEEDAQLHELAAELQIPDLQLEEALETMAWGRGPVCLLAGGEPTVQLQGSGRG
Sbjct: 361 PSMAGASVEEDAQLHELAAELQIPDLQLEEALETMAWGRGPVCLLAGGEPTVQLQGSGRG 420

Query: 421 GRNQELALRVGAELRRWPLGPIDVLFLSGGTDGQDGPTEAAGAWVTPELASQAAAEGLDI 480
           GRNQELALRVGAELRRWPLGPIDVLFLSGGTDGQDGPTEAAGAWVTPELASQAAAEGLDI
Sbjct: 421 GRNQELALRVGAELRRWPLGPIDVLFLSGGTDGQDGPTEAAGAWVTPELASQAAAEGLDI 480

Query: 481 ATFLAHNDSHTFFCCLQGGAHLLHTGMTGTNVMDTHLLFLRPR 523
           ATFLAHNDSHTFFCCLQGGAHLLHTGMTGTNVMDTHLLFLRPR
Sbjct: 481 ATFLAHNDSHTFFCCLQGGAHLLHTGMTGTNVMDTHLLFLRPR 523


>gi|222418771 glycerate kinase isoform 2 [Homo sapiens]
          Length = 234

 Score =  340 bits (873), Expect = 1e-93
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESAVGAVLPGPMLHRALS 60
           MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESAVGAVLPGPMLHRALS
Sbjct: 1   MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESAVGAVLPGPMLHRALS 60

Query: 61  LDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAM 120
           LDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAM
Sbjct: 61  LDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAM 120

Query: 121 ERAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIQQLAEGLTADDLLLVLISGG 178
           ERAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIQQLAEGLTADDLLLVLISGG
Sbjct: 121 ERAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIQQLAEGLTADDLLLVLISGG 178


>gi|14917113 signal recognition particle receptor, beta subunit
           [Homo sapiens]
          Length = 271

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)

Query: 331 VVLSAAMQGDVKSMAQF-YGLLAHVARTRLTPSMAGASVEEDAQLHELAAELQIPDLQLE 389
           VV SAA Q +VK +A+F Y +L      + TPS   A  ++D  + + A  +Q    QLE
Sbjct: 142 VVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQ---QQLE 198

Query: 390 EALETMAWGR--GPVCLLAGGEPTVQLQGSGRGGRNQELALRV 430
           + L T+   R   P  L +      QL   G+     +L L+V
Sbjct: 199 KELNTLRVTRSAAPSTLYSSSTAPAQLGKKGKEFEFSQLPLKV 241


>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
           sapiens]
          Length = 238

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 19/108 (17%)

Query: 370 EDAQLH---ELAAELQIPDLQLEEALETMAWGRGPVCLLAG-GEPTVQLQGSGRGGRNQE 425
           ED  LH   ELA +L++ +L    A+ T + G G V  LAG       +   G  G    
Sbjct: 49  EDDDLHGGGELAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAP 108

Query: 426 LALRVGAELRRWPLGPIDVLFLSGGTDGQDGPTEAAGAWVTPELASQA 473
            A R+GA     P G       +    G++G    AGAW +P  A  A
Sbjct: 109 RAARLGA-----PRG-------ASPPPGEEG---RAGAWRSPGEAGAA 141


>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
           sapiens]
          Length = 238

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 19/108 (17%)

Query: 370 EDAQLH---ELAAELQIPDLQLEEALETMAWGRGPVCLLAG-GEPTVQLQGSGRGGRNQE 425
           ED  LH   ELA +L++ +L    A+ T + G G V  LAG       +   G  G    
Sbjct: 49  EDDDLHGGGELAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAP 108

Query: 426 LALRVGAELRRWPLGPIDVLFLSGGTDGQDGPTEAAGAWVTPELASQA 473
            A R+GA     P G       +    G++G    AGAW +P  A  A
Sbjct: 109 RAARLGA-----PRG-------ASPPPGEEG---RAGAWRSPGEAGAA 141


>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
           sapiens]
          Length = 238

 Score = 33.5 bits (75), Expect = 0.49
 Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 19/108 (17%)

Query: 370 EDAQLH---ELAAELQIPDLQLEEALETMAWGRGPVCLLAG-GEPTVQLQGSGRGGRNQE 425
           ED  LH   ELA +L++ +L    A+ T + G G V  LAG       +   G  G    
Sbjct: 49  EDDDLHGGGELAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAPVMSHGEAGTPAP 108

Query: 426 LALRVGAELRRWPLGPIDVLFLSGGTDGQDGPTEAAGAWVTPELASQA 473
            A R+GA     P G       +    G++G    AGAW +P  A  A
Sbjct: 109 RAARLGA-----PRG-------ASPPPGEEG---RAGAWRSPGEAGAA 141


>gi|85540447 solute carrier family 26, member 11 [Homo sapiens]
          Length = 606

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 299 HTCGHVLNVIIGSNVLALAEAQRQAEAL---GYQAVVLSAAMQGDVKSMAQFYGLLAHVA 355
           H C     V++G   L L + Q+Q  AL   G Q  VL   +  D+K    F  L     
Sbjct: 520 HVCSIDYTVVLGLGEL-LQDFQKQGVALAFVGLQVPVLRVLLSADLKGFQYFSTLEEAEK 578

Query: 356 RTRLTPSMAGASVEEDAQLHELAAELQ 382
           R R  P     ++ ED+ L +  A L+
Sbjct: 579 RLRQEPGTQPYNIREDSILDQKVALLK 605


>gi|6005930 UDP glycosyltransferase 1 family, polypeptide A4
           precursor [Homo sapiens]
          Length = 534

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 275 GLRAALPRSVKTVLSRADSDPHGPHTCGHVLNVII-GSNVLALAEAQRQAEALGYQAVVL 333
           GL+  LPR    +L      P      G VL V   GS  L++ EA R+  A G+QAVVL
Sbjct: 4   GLQVPLPRLATGLLLLLSVQPWAES--GKVLVVPTDGSPWLSMREALRELHARGHQAVVL 61

Query: 334 SAAMQGDVKSMAQFYGLLAH 353
           +  +   +K   +F+ L A+
Sbjct: 62  TPEVNMHIKE-EKFFTLTAY 80


>gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 327

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/56 (37%), Positives = 24/56 (42%)

Query: 44  SAVGAVLPGPMLHRALSLDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEE 99
           +  G V  GP LH AL  D GG +L+VR R    R     V  G    G     EE
Sbjct: 99  AGAGIVRSGPGLHGALGPDTGGAKLRVRPRRTPPRDPSLPVLGGAKEPGQVEGQEE 154


>gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo
          sapiens]
          Length = 264

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/56 (37%), Positives = 24/56 (42%)

Query: 44 SAVGAVLPGPMLHRALSLDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEE 99
          +  G V  GP LH AL  D GG +L+VR R    R     V  G    G     EE
Sbjct: 36 AGAGIVRSGPGLHGALGPDTGGAKLRVRPRRTPPRDPSLPVLGGAKEPGQVEGQEE 91


>gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo
          sapiens]
          Length = 264

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/56 (37%), Positives = 24/56 (42%)

Query: 44 SAVGAVLPGPMLHRALSLDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEE 99
          +  G V  GP LH AL  D GG +L+VR R    R     V  G    G     EE
Sbjct: 36 AGAGIVRSGPGLHGALGPDTGGAKLRVRPRRTPPRDPSLPVLGGAKEPGQVEGQEE 91


>gi|4506453 retinol-binding protein 3 precursor [Homo sapiens]
          Length = 1247

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 97  AEELLGQH-----LVQGVISVPKGIRAAMERAGKQEMLLKPHSRVQVFEGAEDNLPDRDA 151
           A+E+L  H     LV+G   + +   A  E  G+   LL    R ++ +GA     D ++
Sbjct: 626 AQEVLEFHQSLGALVEGTGHLLEAHYARPEVVGQTSALL----RAKLAQGAYRTAVDLES 681

Query: 152 LRAALAIQQLAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQTLTRLLAA 204
           L + L      + ++ D  LLV  S G   +  AP PP  +   + LT L+ A
Sbjct: 682 LASQLTAD--LQEVSGDHRLLVFHSPGELVVEEAPPPPPAVPSPEELTYLIEA 732


>gi|124494247 myosin IC isoform b [Homo sapiens]
          Length = 1044

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 191 TLEEKQTLTRLLAARGATIQELNTIRKALSQ----LKGGGLAQAAYPAQ-----VVSLIL 241
           T  + + LTRLL+  G+T++E  T RK +++    L    L QAAY        V S   
Sbjct: 312 TENQLKYLTRLLSVEGSTLREALTHRKIIAKGEELLSPLNLEQAAYARDALAKAVYSRTF 371

Query: 242 SDVVGDPVEVIASGPTVASSHNVQDCLHILNRYG 275
           + +VG     +AS    + S      L +L+ YG
Sbjct: 372 TWLVGKINRSLASKDVESPSWRSTTVLGLLDIYG 405


>gi|124494238 myosin IC isoform a [Homo sapiens]
          Length = 1063

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 191 TLEEKQTLTRLLAARGATIQELNTIRKALSQ----LKGGGLAQAAYPAQ-----VVSLIL 241
           T  + + LTRLL+  G+T++E  T RK +++    L    L QAAY        V S   
Sbjct: 331 TENQLKYLTRLLSVEGSTLREALTHRKIIAKGEELLSPLNLEQAAYARDALAKAVYSRTF 390

Query: 242 SDVVGDPVEVIASGPTVASSHNVQDCLHILNRYG 275
           + +VG     +AS    + S      L +L+ YG
Sbjct: 391 TWLVGKINRSLASKDVESPSWRSTTVLGLLDIYG 424


>gi|124494240 myosin IC isoform c [Homo sapiens]
          Length = 1028

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 191 TLEEKQTLTRLLAARGATIQELNTIRKALSQ----LKGGGLAQAAYPAQ-----VVSLIL 241
           T  + + LTRLL+  G+T++E  T RK +++    L    L QAAY        V S   
Sbjct: 296 TENQLKYLTRLLSVEGSTLREALTHRKIIAKGEELLSPLNLEQAAYARDALAKAVYSRTF 355

Query: 242 SDVVGDPVEVIASGPTVASSHNVQDCLHILNRYG 275
           + +VG     +AS    + S      L +L+ YG
Sbjct: 356 TWLVGKINRSLASKDVESPSWRSTTVLGLLDIYG 389


>gi|169214874 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 583

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 26/153 (16%)

Query: 1   MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESA------------VGA 48
           +AAA+QV+  L  AP+  LL  G  A LA    LA +A++  +SA             G 
Sbjct: 422 LAAAVQVV--LRDAPVQQLLLEGQRAHLAQQPQLA-RAQEGQDSAEGPRVAVEEELVAGD 478

Query: 49  VLPGPMLHRALSLDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEE----LLGQH 104
           V+    +   + +  G    + R R    R      G G+ VL  A   ++    +LG  
Sbjct: 479 VVVIAHVEDVVEVGAGLELAQARQRELVQR------GPGQRVLDAAYVDDDPTAAVLGLT 532

Query: 105 LVQGVISVPKGIRAAMERAGKQEMLLKPHSRVQ 137
            + G+I  P+ +R A+ERA    + L+   RV+
Sbjct: 533 ALAGLILRPQPLRPAVERA-LDGLALREEGRVE 564


>gi|169215109 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 583

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 26/153 (16%)

Query: 1   MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESA------------VGA 48
           +AAA+QV+  L  AP+  LL  G  A LA    LA +A++  +SA             G 
Sbjct: 422 LAAAVQVV--LRDAPVQQLLLEGQRAHLAQQPQLA-RAQEGQDSAEGPRVAVEEELVAGD 478

Query: 49  VLPGPMLHRALSLDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEE----LLGQH 104
           V+    +   + +  G    + R R    R      G G+ VL  A   ++    +LG  
Sbjct: 479 VVVIAHVEDVVEVGAGLELAQARQRELVQR------GPGQRVLDAAYVDDDPTAAVLGLT 532

Query: 105 LVQGVISVPKGIRAAMERAGKQEMLLKPHSRVQ 137
            + G+I  P+ +R A+ERA    + L+   RV+
Sbjct: 533 ALAGLILRPQPLRPAVERA-LDGLALREEGRVE 564


>gi|169214604 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 583

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 26/153 (16%)

Query: 1   MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESA------------VGA 48
           +AAA+QV+  L  AP+  LL  G  A LA    LA +A++  +SA             G 
Sbjct: 422 LAAAVQVV--LRDAPVQQLLLEGQRAHLAQQPQLA-RAQEGQDSAEGPRVAVEEELVAGD 478

Query: 49  VLPGPMLHRALSLDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEE----LLGQH 104
           V+    +   + +  G    + R R    R      G G+ VL  A   ++    +LG  
Sbjct: 479 VVVIAHVEDVVEVGAGLELAQARQRELVQR------GPGQRVLDAAYVDDDPTAAVLGLT 532

Query: 105 LVQGVISVPKGIRAAMERAGKQEMLLKPHSRVQ 137
            + G+I  P+ +R A+ERA    + L+   RV+
Sbjct: 533 ALAGLILRPQPLRPAVERA-LDGLALREEGRVE 564


>gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [Homo
           sapiens]
          Length = 299

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 186 PIPPVTLEEKQTLTRLLAARGATIQELNT-IRKALSQLKGGGLAQAAYPAQVVSLILSDV 244
           P P  T E   T T  L A+GA I E+N+  R+ L+ L  G         +V+   +  +
Sbjct: 69  PSPQETKEAALTSTISLRAQGAEISEMNSPSRRVLTWLMKG-------VEKVIPQPVHSI 121

Query: 245 VGDPVEVIASGPT 257
             DP +++  G T
Sbjct: 122 TEDPAQILGHGST 134


>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
           sapiens]
          Length = 1251

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 186 PIPPVTLEEKQTLTRLLAARGATIQELNT-IRKALSQLKGGGLAQAAYPAQVVSLILSDV 244
           P P  T E   T T  L A+GA I E+N+  R+ L+ L  G         +V+   +  +
Sbjct: 69  PSPQETKEAALTSTISLRAQGAEISEMNSPSRRVLTWLMKG-------VEKVIPQPVHSI 121

Query: 245 VGDPVEVIASGPT 257
             DP +++  G T
Sbjct: 122 TEDPAQILGHGST 134


>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2790

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 369  EEDAQLHELAAELQIPDLQLEEALETMAWGRGPVCLLAGGEPTVQLQGSGRGGRNQE 425
            EE+A+  E   E++  +++ E+ LE  A   GP+     GE   Q + +  GG+  E
Sbjct: 1920 EEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPDGEELSQAEATKAGGKEPE 1976


>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 369  EEDAQLHELAAELQIPDLQLEEALETMAWGRGPVCLLAGGEPTVQLQGSGRGGRNQE 425
            EE+A+  E   E++  +++ E+ LE  A   GP+     GE   Q + +  GG+  E
Sbjct: 1836 EEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPDGEELSQAEATKAGGKEPE 1892


>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 369  EEDAQLHELAAELQIPDLQLEEALETMAWGRGPVCLLAGGEPTVQLQGSGRGGRNQE 425
            EE+A+  E   E++  +++ E+ LE  A   GP+     GE   Q + +  GG+  E
Sbjct: 1836 EEEAERGEEEEEVEEEEVEEEQGLEPPAGPEGPLPEPPDGEELSQAEATKAGGKEPE 1892


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 173  VLISGGGSALLPAPIPPVTLEEKQTLTRLLAARGATIQELNTIRKALSQLKGGGLAQAAY 232
            VL       +LPAP+P        T T  LA   A     ++  + LS   G G  Q  +
Sbjct: 1654 VLAPSSTQTMLPAPVPSPLPSPASTQTLALAPALAPTLGGSSPSQTLS--LGTGNPQGPF 1711

Query: 233  PAQVVSLI-LSDVVGDPVEVIASGP 256
            P Q +SL   S +V  P + ++  P
Sbjct: 1712 PTQTLSLTPASSLVPTPAQTLSLAP 1736


>gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 127

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 413 QLQGSGRGGRNQELA--LRVGAELRRWPLGPIDV---LFLSGGTDGQDGPTEAAGAWVTP 467
           + Q   RG    E    L++ +E R WP G   V   L L     G  GPT AAG+W   
Sbjct: 31  EAQAGPRGAHQPEAVWGLQMPSEGRSWP-GEATVRPELGLGSLASGSCGPTRAAGSWAGA 89

Query: 468 E 468
           E
Sbjct: 90  E 90


>gi|169216514 PREDICTED: similar to paraneoplastic antigen MA2 [Homo
           sapiens]
          Length = 340

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 393 ETMAWGRGPVCLLAGGEPTVQLQGSGRGGRNQELALRVGAELRRWPLGPIDVLFLSGGTD 452
           ET A G+G       G    + +G+G GG   E  LRV  E R    G       + G  
Sbjct: 132 ETGAVGKGEAEATGEGGSASEAEGAGEGGAGDE--LRVAEEARESDEG-------AAGDT 182

Query: 453 GQDGPTEA---AGAWVTPELASQAAAEG 477
           G  G  EA   AGA      A +A A G
Sbjct: 183 GPAGEAEAVGEAGAVGEAGAAGEAGAVG 210


>gi|169216749 PREDICTED: similar to Putative paraneoplastic
           antigen-like protein 6B-like protein [Homo sapiens]
          Length = 340

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 393 ETMAWGRGPVCLLAGGEPTVQLQGSGRGGRNQELALRVGAELRRWPLGPIDVLFLSGGTD 452
           ET A G+G       G    + +G+G GG   E  LRV  E R    G       + G  
Sbjct: 132 ETGAVGKGEAEATGEGGSASEAEGAGEGGAGDE--LRVAEEARESDEG-------AAGDT 182

Query: 453 GQDGPTEA---AGAWVTPELASQAAAEG 477
           G  G  EA   AGA      A +A A G
Sbjct: 183 GPAGEAEAVGEAGAVGEAGAAGEAGAVG 210


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 9/114 (7%)

Query: 153 RAALAIQQLAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQTLTRLLAARGATIQEL 212
           R    +   AE      + + +++ GG+AL P  +PP   E ++         G  +Q  
Sbjct: 350 RRVFVVGTEAEACREGKVSVEVVTAGGAALPPPLLPPGDSEIEE---------GEIVQPE 400

Query: 213 NTIRKALSQLKGGGLAQAAYPAQVVSLILSDVVGDPVEVIASGPTVASSHNVQD 266
              R ALS  + GG A    PA   +     +   P      G    S H   D
Sbjct: 401 EEPRLALSLFRPGGRAARPTPAASATPTAQPLPQPPAPRAPEGDDFLSLHAESD 454


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,197,198
Number of Sequences: 37866
Number of extensions: 848864
Number of successful extensions: 2401
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2392
Number of HSP's gapped (non-prelim): 30
length of query: 523
length of database: 18,247,518
effective HSP length: 107
effective length of query: 416
effective length of database: 14,195,856
effective search space: 5905476096
effective search space used: 5905476096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.