Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: MYO1C Sequence: fasta or formatted (1028aa) NCBI GI: 124494240
Description:

myosin IC isoform c

Referenced in:

Myosin

Other entries for this name:
alt prot [1063aa] myosin IC isoform a
alt prot [1044aa] myosin IC isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         72           2
 C cysteine            1.4         14           1
 D aspartate           4.2         43           1
 E glutamate           7.3         75           3
 F phenylalanine       4.6         47           2
 G glycine             5.4         55           2
 H histidine           2.2         23           2
 I isoleucine          4.8         49           2
 K lysine              6.3         65           2
 L leucine            11.2        115           3
 M methionine          0.9          9           1
 N asparagine          4.2         43           2
 P proline             4.1         42           3
 Q glutamine           4.8         49           2
 R arginine            8.5         87           3
 S serine              6.4         66           2
 T threonine           5.3         54           2
 V valine              6.9         71           2
 W tryptophan          1.4         14           2
 Y tyrosine            3.4         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myosin IC isoform c 
MYO1C                 1.000   myosin IC isoform b 
MYO1C                 1.000   myosin IC isoform a 
MYO1H                 0.622   myosin 1H 
MYO1B                 0.383   myosin IB isoform 2 
MYO1A                 0.377   myosin IA 
MYO1B                 0.354   myosin IB isoform 1 
MYO1B                 0.354   myosin IB isoform 1 
MYO1D                 0.331   myosin ID 
MYO1G                 0.312   myosin IG 
MYO1F                 0.289   myosin IF 
MYO1E                 0.287   myosin IE 
MYO7B                 0.241   myosin VIIB 
MYO7A                 0.237   myosin VIIA isoform 2 
MYO7A                 0.237   myosin VIIA isoform 3 
MYO7A                 0.237   myosin VIIA isoform 1 
MYO10                 0.226   myosin X 
MYO5C                 0.224   myosin VC 
MYO15A                0.218   myosin XV 
MYO5A                 0.211   myosin VA isoform 2 
MYO5A                 0.211   myosin VA isoform 1 
MYO5B                 0.210   myosin VB 
MYH7                  0.207   myosin, heavy chain 7, cardiac muscle, beta 
MYH6                  0.207   myosin heavy chain 6 
MYH10                 0.202   myosin, heavy polypeptide 10, non-muscle 
MYH14                 0.202   myosin, heavy chain 14 isoform 2 
MYH3                  0.200   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH14                 0.200   myosin, heavy chain 14 isoform 1 
MYH11                 0.199   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.199   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press