Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128598 Sequence: fasta or formatted (583aa) NCBI GI: 169214604
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {583aa} PREDICTED: hypothetical protein
alt prot {583aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.9         87           3
 C cysteine            0.7          4           1
 D aspartate           6.0         35           3
 E glutamate           8.1         47           3
 F phenylalanine       0.5          3           1
 G glycine            11.8         69           2
 H histidine           5.7         33           2
 I isoleucine          0.9          5           1
 K lysine              0.7          4           1
 L leucine            11.3         66           5
 M methionine          0.2          1           1
 N asparagine          0.3          2           1
 P proline             5.8         34           2
 Q glutamine           9.4         55           2
 R arginine            8.2         48           2
 S serine              2.1         12           1
 T threonine           1.4          8           1
 V valine             10.5         61           4
 W tryptophan          0.7          4           1
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128598          0.989   PREDICTED: hypothetical protein 
LOC100128598          0.989   PREDICTED: hypothetical protein 
LOC100292464          0.026   PREDICTED: hypothetical protein 
LOC100290745          0.026   PREDICTED: hypothetical protein XP_002348067 
LOC100287107          0.026   PREDICTED: hypothetical protein XP_002343747 
RPGR                  0.016   retinitis pigmentosa GTPase regulator isoform C [Hom...
RP1L1                 0.014   retinitis pigmentosa 1-like 1 
LOC100133479          0.012   PREDICTED: hypothetical protein 
LOC100133479          0.012   PREDICTED: hypothetical protein 
TNRC18                0.011   trinucleotide repeat containing 18 
EPPK1                 0.010   epiplakin 1 
FLG                   0.010   filaggrin 
HNRNPU                0.009   heterogeneous nuclear ribonucleoprotein U isoform b ...
HNRNPU                0.009   heterogeneous nuclear ribonucleoprotein U isoform a ...
GOLGA8F               0.009   golgi autoantigen, golgin subfamily a, 8F 
GOLGA8E               0.009   golgi autoantigen, golgin subfamily a, 8E 
CLIC6                 0.009   chloride intracellular channel 6 
GOLGA8G               0.009   golgi autoantigen, golgin subfamily a, 8G 
FLG2                  0.009   filaggrin family member 2 
RRBP1                 0.009   ribosome binding protein 1 
RRBP1                 0.009   ribosome binding protein 1 
ARHGEF19              0.009   Rho guanine nucleotide exchange factor (GEF) 19 [Hom...
PRH1                  0.008   proline-rich protein HaeIII subfamily 1 
BSN                   0.008   bassoon protein 
MYH7B                 0.008   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
PPP1R10               0.007   protein phosphatase 1, regulatory subunit 10 
IRF2BP1               0.007   interferon regulatory factor 2 binding protein 1 [Ho...
ARHGAP30              0.007   Rho GTPase activating protein 30 isoform 1 
BMP2K                 0.007   BMP-2 inducible kinase isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press