Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128598 Sequence: fasta or formatted (583aa) NCBI GI: 169215109
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {583aa} PREDICTED: hypothetical protein
alt mRNA {583aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1         88           3
 C cysteine            0.5          3           1
 D aspartate           5.8         34           3
 E glutamate           8.2         48           3
 F phenylalanine       0.5          3           1
 G glycine            11.7         68           2
 H histidine           5.7         33           2
 I isoleucine          0.9          5           1
 K lysine              0.7          4           1
 L leucine            11.3         66           5
 M methionine          0.2          1           1
 N asparagine          0.3          2           1
 P proline             5.8         34           2
 Q glutamine           9.4         55           2
 R arginine            8.4         49           2
 S serine              2.1         12           1
 T threonine           1.2          7           1
 V valine             10.5         61           4
 W tryptophan          0.7          4           1
 Y tyrosine            1.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128598          1.000   PREDICTED: hypothetical protein 
LOC100128598          0.990   PREDICTED: hypothetical protein 
LOC100292464          0.022   PREDICTED: hypothetical protein 
LOC100290745          0.022   PREDICTED: hypothetical protein XP_002348067 
LOC100287107          0.022   PREDICTED: hypothetical protein XP_002343747 
FLG                   0.018   filaggrin 
RPGR                  0.017   retinitis pigmentosa GTPase regulator isoform C [Hom...
RP1L1                 0.011   retinitis pigmentosa 1-like 1 
TNRC18                0.011   trinucleotide repeat containing 18 
EPPK1                 0.010   epiplakin 1 
LOC100133479          0.010   PREDICTED: hypothetical protein 
LOC100133479          0.010   PREDICTED: hypothetical protein 
PPP1R10               0.009   protein phosphatase 1, regulatory subunit 10 
BSN                   0.009   bassoon protein 
GOLGA8F               0.009   golgi autoantigen, golgin subfamily a, 8F 
FNDC1                 0.009   fibronectin type III domain containing 1 
ARHGEF19              0.009   Rho guanine nucleotide exchange factor (GEF) 19 [Hom...
MYH7B                 0.009   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
GOLGA8E               0.009   golgi autoantigen, golgin subfamily a, 8E 
GOLGA8G               0.009   golgi autoantigen, golgin subfamily a, 8G 
FLG2                  0.009   filaggrin family member 2 
HNRNPU                0.008   heterogeneous nuclear ribonucleoprotein U isoform b ...
HNRNPU                0.008   heterogeneous nuclear ribonucleoprotein U isoform a ...
PRH1                  0.008   proline-rich protein HaeIII subfamily 1 
ITGA7                 0.007   integrin alpha 7 isoform 3 
ITGA7                 0.007   integrin alpha 7 isoform 1 precursor 
MLL2                  0.007   myeloid/lymphoid or mixed-lineage leukemia 2 
APOB48R               0.007   apolipoprotein B48 receptor 
BMP2K                 0.007   BMP-2 inducible kinase isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press