Guide to the Human Genome
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Name: C11orf35 Sequence: fasta or formatted (634aa) NCBI GI: 27734829
Description:

hypothetical protein LOC256329

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         42           2
 C cysteine            2.2         14           1
 D aspartate           3.9         25           1
 E glutamate           7.9         50           2
 F phenylalanine       2.1         13           1
 G glycine             6.2         39           2
 H histidine           3.0         19           2
 I isoleucine          2.1         13           1
 K lysine              3.6         23           2
 L leucine            11.0         70           3
 M methionine          0.9          6           1
 N asparagine          1.7         11           1
 P proline            11.2         71           2
 Q glutamine           5.2         33           1
 R arginine           10.1         64           3
 S serine              9.5         60           3
 T threonine           5.2         33           2
 V valine              5.5         35           2
 W tryptophan          1.6         10           1
 Y tyrosine            0.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC256329 
IFLTD1                0.019   intermediate filament tail domain containing 1 isof...
IFLTD1                0.019   intermediate filament tail domain containing 1 isof...
IFLTD1                0.019   intermediate filament tail domain containing 1 isof...
DIAPH1                0.016   diaphanous 1 isoform 2 
DIAPH1                0.016   diaphanous 1 isoform 1 
PASD1                 0.015   PAS domain containing 1 
WIPF2                 0.015   WIRE protein 
DEF6                  0.013   differentially expressed in FDCP 6 homolog 
LOC642515             0.013   PREDICTED: similar to NG5 protein 
LOC642515             0.013   PREDICTED: similar to NG5 protein 
FYCO1                 0.013   FYVE and coiled-coil domain containing 1 
WIPF3                 0.013   WAS/WASL interacting protein family, member 3 [Homo...
ProSAPiP1             0.013   ProSAPiP1 protein 
ZNF828                0.013   zinc finger protein 828 
COL9A3                0.012   alpha 3 type IX collagen 
CCDC114               0.012   coiled-coil domain containing 114 isoform 2 
MAP7                  0.012   microtubule-associated protein 7 
MARVELD3              0.012   MARVEL domain containing 3 isoform 1 
MARVELD3              0.012   MARVEL domain containing 3 isoform 2 
UBN2                  0.012   ubinuclein 2 
FLJ22184              0.012   PREDICTED: hypothetical protein LOC80164 
LOC647042             0.012   PREDICTED: hypothetical protein isoform 2 
FAM22E                0.012   PREDICTED: hypothetical protein isoform 1 
FAM22E                0.012   PREDICTED: hypothetical protein 
C14orf45              0.012   hypothetical protein LOC80127 
SMR3A                 0.012   submaxillary gland androgen regulated protein 3 homo...
GOLGA8E               0.012   golgi autoantigen, golgin subfamily a, 8E 
MAP7D1                0.012   MAP7 domain containing 1 
DCAF10                0.012   WD repeat domain 32 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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