Guide to the Human Genome
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Name: MARVELD3 Sequence: fasta or formatted (401aa) NCBI GI: 65293358
Description:

MARVEL domain containing 3 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {410aa} MARVEL domain containing 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         34           3
 C cysteine            3.0         12           2
 D aspartate           6.5         26           1
 E glutamate           7.2         29           2
 F phenylalanine       3.0         12           1
 G glycine            11.0         44           2
 H histidine           2.0          8           1
 I isoleucine          2.2          9           1
 K lysine              3.5         14           1
 L leucine             8.0         32           3
 M methionine          1.7          7           1
 N asparagine          1.0          4           1
 P proline             8.7         35           2
 Q glutamine           3.5         14           2
 R arginine           12.2         49           3
 S serine              5.2         21           2
 T threonine           3.0         12           1
 V valine              4.0         16           2
 W tryptophan          1.0          4           1
 Y tyrosine            4.7         19           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MARVEL domain containing 3 isoform 2 
MARVELD3              0.610   MARVEL domain containing 3 isoform 1 
RBM25                 0.063   RNA binding motif protein 25 
ZC3H13                0.063   zinc finger CCCH-type containing 13 
LOC100131202          0.060   PREDICTED: hypothetical protein 
LOC100286959          0.057   PREDICTED: hypothetical protein XP_002343921 
DIDO1                 0.055   death inducer-obliterator 1 isoform c 
LOC100131202          0.054   PREDICTED: hypothetical protein 
RDBP                  0.054   RD RNA-binding protein 
LOC100288837          0.051   PREDICTED: hypothetical protein XP_002343931, parti...
SFRS12                0.046   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.046   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100134067          0.045   PREDICTED: hypothetical protein 
DDX46                 0.044   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
EIF3A                 0.041   eukaryotic translation initiation factor 3, subunit 1...
ACIN1                 0.040   apoptotic chromatin condensation inducer 1 
PRPF38B               0.040   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
TRAF3IP1              0.040   TNF receptor-associated factor 3 interacting protei...
TRAF3IP1              0.040   TNF receptor-associated factor 3 interacting protein...
IK                    0.039   RED protein 
FIP1L1                0.037   FIP1 like 1 isoform 3 
FIP1L1                0.037   FIP1 like 1 isoform 2 
FIP1L1                0.037   FIP1 like 1 isoform 1 
DDX23                 0.037   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
YTHDC1                0.037   splicing factor YT521-B isoform 2 
CBX8                  0.037   chromobox homolog 8 
YTHDC1                0.037   splicing factor YT521-B isoform 1 
SNRNP70               0.034   U1 small nuclear ribonucleoprotein 70 kDa 
MAGI1                 0.033   membrane associated guanylate kinase, WW and PDZ dom...
DHX8                  0.032   DEAH (Asp-Glu-Ala-His) box polypeptide 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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