Guide to the Human Genome
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Name: C14orf45 Sequence: fasta or formatted (529aa) NCBI GI: 166295204
Description:

hypothetical protein LOC80127

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         29           2
 C cysteine            0.6          3           1
 D aspartate           5.7         30           2
 E glutamate          11.0         58           2
 F phenylalanine       2.6         14           2
 G glycine             3.0         16           1
 H histidine           2.8         15           2
 I isoleucine          5.7         30           2
 K lysine             13.0         69           3
 L leucine            10.2         54           3
 M methionine          2.5         13           1
 N asparagine          4.2         22           1
 P proline             1.7          9           2
 Q glutamine           8.5         45           2
 R arginine            5.7         30           2
 S serine              5.3         28           2
 T threonine           4.9         26           1
 V valine              4.7         25           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.9         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC80127 
CENPE                 0.049   centromere protein E 
CENPF                 0.049   centromere protein F 
KTN1                  0.047   kinectin 1 isoform b 
KTN1                  0.047   kinectin 1 isoform a 
KTN1                  0.047   kinectin 1 isoform c 
KTN1                  0.047   kinectin 1 isoform a 
RAI14                 0.047   retinoic acid induced 14 isoform d 
RAI14                 0.047   retinoic acid induced 14 isoform c 
RAI14                 0.047   retinoic acid induced 14 isoform b 
RAI14                 0.047   retinoic acid induced 14 isoform a 
RAI14                 0.047   retinoic acid induced 14 isoform a 
RAI14                 0.047   retinoic acid induced 14 isoform a 
MYH8                  0.047   myosin, heavy chain 8, skeletal muscle, perinatal [...
WDR87                 0.046   NYD-SP11 protein 
TRIP11                0.045   thyroid hormone receptor interactor 11 
EEA1                  0.045   early endosome antigen 1, 162kD 
ERC1                  0.045   RAB6-interacting protein 2 isoform delta 
C9orf117              0.044   hypothetical protein LOC286207 
CEP250                0.042   centrosomal protein 2 
LOC283685             0.041   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ERC1                  0.040   RAB6-interacting protein 2 isoform epsilon 
C10orf118             0.040   CTCL tumor antigen L14-2 
CCDC18                0.040   sarcoma antigen NY-SAR-41 
RAD50                 0.040   RAD50 homolog isoform 2 
RAD50                 0.040   RAD50 homolog isoform 1 
MYH11                 0.040   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.040   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.040   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.040   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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