Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DCAF10 Sequence: fasta or formatted (559aa) NCBI GI: 110815800
Description:

WD repeat domain 32

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         31           3
 C cysteine            3.4         19           1
 D aspartate           5.2         29           2
 E glutamate           5.2         29           2
 F phenylalanine       3.2         18           2
 G glycine             8.8         49           2
 H histidine           4.1         23           2
 I isoleucine          3.2         18           2
 K lysine              3.2         18           2
 L leucine             9.7         54           2
 M methionine          1.3          7           1
 N asparagine          2.9         16           2
 P proline             8.9         50           4
 Q glutamine           1.4          8           1
 R arginine            7.2         40           2
 S serine             12.2         68           5
 T threonine           6.8         38           2
 V valine              4.7         26           2
 W tryptophan          0.9          5           1
 Y tyrosine            2.3         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 32 
WDR61                 0.036   WD repeat domain 61 
COL5A2                0.029   alpha 2 type V collagen preproprotein 
WDR51A                0.028   WD repeat domain 51A isoform 3 
WDR51A                0.028   WD repeat domain 51A isoform 2 
WDR51A                0.028   WD repeat domain 51A isoform 1 
COL3A1                0.027   collagen type III alpha 1 preproprotein 
GRWD1                 0.026   glutamate-rich WD repeat containing 1 
WDR5                  0.026   WD repeat domain 5 
WDR5                  0.026   WD repeat domain 5 
COLEC12               0.026   collectin sub-family member 12 
WDR38                 0.026   WD repeat domain 38 
TSSC1                 0.026   tumor suppressing subtransferable candidate 1 
SNRNP40               0.025   WD repeat domain 57 (U5 snRNP specific) 
WDR51B                0.025   WD repeat domain 51B 
CPSF6                 0.025   cleavage and polyadenylation specific factor 6, 68 ...
KATNB1                0.025   katanin p80 subunit B 1 
RBBP7                 0.025   retinoblastoma binding protein 7 
WDR5B                 0.025   WD repeat domain 5B 
COL2A1                0.025   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.025   collagen, type II, alpha 1 isoform 2 precursor [Hom...
SAMD1                 0.024   sterile alpha motif domain containing 1 
COL23A1               0.024   collagen, type XXIII, alpha 1 
LOC100292122          0.024   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.024   PREDICTED: hypothetical protein XP_002344191 
CORO2B                0.024   coronin, actin binding protein, 2B 
COL1A1                0.023   alpha 1 type I collagen preproprotein 
WASL                  0.023   Wiskott-Aldrich syndrome gene-like protein 
COL12A1               0.023   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.023   collagen, type XII, alpha 1 long isoform precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press