Guide to the Human Genome
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Name: IFLTD1 Sequence: fasta or formatted (409aa) NCBI GI: 224593273
Description:

intermediate filament tail domain containing 1 isoform 1

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [388aa] intermediate filament tail domain containing 1 isoform 2
alt prot [325aa] intermediate filament tail domain containing 1 isoform 3
alt prot [369aa] intermediate filament tail domain containing 1 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         24           3
 C cysteine            1.5          6           1
 D aspartate           4.9         20           1
 E glutamate           5.6         23           2
 F phenylalanine       3.4         14           1
 G glycine             4.4         18           2
 H histidine           2.0          8           1
 I isoleucine          4.6         19           1
 K lysine              8.8         36           4
 L leucine             6.8         28           2
 M methionine          2.0          8           1
 N asparagine          4.4         18           1
 P proline             6.1         25           2
 Q glutamine           7.1         29           2
 R arginine            3.9         16           1
 S serine             11.2         46           3
 T threonine           6.8         28           2
 V valine              6.1         25           2
 W tryptophan          1.7          7           1
 Y tyrosine            2.7         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   intermediate filament tail domain containing 1 isof... 
IFLTD1                0.926   intermediate filament tail domain containing 1 isof...
IFLTD1                0.867   intermediate filament tail domain containing 1 isof...
IFLTD1                0.756   intermediate filament tail domain containing 1 isof...
LMNB2                 0.066   lamin B2 
LMNA                  0.054   lamin A/C isoform 2 
LMNA                  0.054   lamin A/C isoform 1 precursor 
LMNB1                 0.050   lamin B1 
LMNA                  0.050   lamin A/C isoform 3 
C11orf35              0.030   hypothetical protein LOC256329 
MAGI3                 0.009   membrane-associated guanylate kinase-related  3 iso...
MAGI3                 0.009   membrane-associated guanylate kinase-related  3 iso...
MLXIP                 0.007   MLX interacting protein 
KIF15                 0.007   kinesin family member 15 
KIAA2026              0.007   hypothetical protein LOC158358 
CYTSA                 0.006   cytospin A 
CYTSA                 0.006   cytospin A 
EPS15                 0.006   epidermal growth factor receptor pathway substrate ...
EPS15                 0.006   epidermal growth factor receptor pathway substrate 15...
VGLL4                 0.006   vestigial like 4 isoform b 
NRG1                  0.006   neuregulin 1 isoform ndf43b 
NRG1                  0.006   neuregulin 1 isoform HRG-gamma 
NRG1                  0.006   neuregulin 1 isoform HRG-beta2b 
NRG1                  0.006   neuregulin 1 isoform HRG-beta1b 
NRG1                  0.006   neuregulin 1 isoform HRG-beta3 
NRG1                  0.006   neuregulin 1 isoform HRG-beta2 
NRG1                  0.006   neuregulin 1 isoform HRG-beta1 
NRG1                  0.006   neuregulin 1 isoform HRG-alpha 
NRG1                  0.006   neuregulin 1 isoform ndf43 
LOC643446             0.005   PREDICTED: similar to ribonucleic acid binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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