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Search of human proteins with 27436897
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27436897 tapasin isoform 3 precursor [Homo sapiens]
(412 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27436897 tapasin isoform 3 precursor [Homo sapiens] 850 0.0
gi|27436893 tapasin isoform 1 precursor [Homo sapiens] 833 0.0
gi|27436895 tapasin isoform 2 precursor [Homo sapiens] 595 e-170
gi|157739930 TAP binding protein-like [Homo sapiens] 74 3e-13
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 41 0.002
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 39 0.007
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 39 0.011
gi|155030211 major histocompatibility complex, class II, DR beta... 38 0.019
gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo ... 38 0.019
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ... 37 0.033
gi|239740859 PREDICTED: similar to major histocompatibility comp... 37 0.033
gi|239740857 PREDICTED: similar to major histocompatibility comp... 37 0.033
gi|239748415 PREDICTED: hypothetical protein [Homo sapiens] 36 0.073
gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo ... 36 0.073
gi|24797076 major histocompatibility complex, class II, DP beta ... 35 0.095
gi|239753856 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|17986005 major histocompatibility complex, class II, DR beta ... 35 0.16
gi|169217452 PREDICTED: similar to HLA class II histocompatibili... 35 0.16
gi|239740855 PREDICTED: similar to major histocompatibility comp... 35 0.16
gi|239740853 PREDICTED: similar to major histocompatibility comp... 35 0.16
gi|13994345 killer-specific secretory protein of 37 kDa precurso... 35 0.16
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 35 0.16
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 35 0.16
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 35 0.16
gi|239758092 PREDICTED: similar to HLA class II histocompatibili... 34 0.21
gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 34 0.21
gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 34 0.21
gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 34 0.21
gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 34 0.21
gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 34 0.21
>gi|27436897 tapasin isoform 3 precursor [Homo sapiens]
Length = 412
Score = 850 bits (2197), Expect = 0.0
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL
Sbjct: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
Query: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD
Sbjct: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
Query: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL
Sbjct: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
Query: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
Query: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT 300
WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT
Sbjct: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT 300
Query: 301 LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV 360
LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV
Sbjct: 301 LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV 360
Query: 361 SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKSWELCGI 412
SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKSWELCGI
Sbjct: 361 SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKSWELCGI 412
>gi|27436893 tapasin isoform 1 precursor [Homo sapiens]
Length = 448
Score = 833 bits (2151), Expect = 0.0
Identities = 405/406 (99%), Positives = 405/406 (99%)
Query: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL
Sbjct: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
Query: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD
Sbjct: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
Query: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL
Sbjct: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
Query: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
Query: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT 300
WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT
Sbjct: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT 300
Query: 301 LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV 360
LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV
Sbjct: 301 LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV 360
Query: 361 SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKS 406
SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAG S
Sbjct: 361 SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
>gi|27436895 tapasin isoform 2 precursor [Homo sapiens]
Length = 299
Score = 595 bits (1533), Expect = e-170
Identities = 289/289 (100%), Positives = 289/289 (100%)
Query: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL
Sbjct: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
Query: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD
Sbjct: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
Query: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL
Sbjct: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
Query: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
Query: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY
Sbjct: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
>gi|157739930 TAP binding protein-like [Homo sapiens]
Length = 468
Score = 73.6 bits (179), Expect = 3e-13
Identities = 105/414 (25%), Positives = 160/414 (38%), Gaps = 63/414 (15%)
Query: 6 LLLAVALGLATAVSAGPA---------VIECWFVEDASGKGLA-----KRPGALLLRQGP 51
LLL +AL A PA V++C+ +D + +G + +L+L+Q P
Sbjct: 9 LLLCLALSGAAETKPHPAEGQWRAVDVVLDCFLAKDGAHRGALASSEDRARASLVLKQVP 68
Query: 52 ----GEPPPRPDLDPELYLSVHDPAGALQAAFR--RYPRGAPAPH---------CEMSRF 96
G D L+ DP +A+ + P+ H CE+SR+
Sbjct: 69 VLDDGSLEDFTDFQGGT-LAQDDPPIIFEASVDLVQIPQAEALLHADCSGKEVTCEISRY 127
Query: 97 VPLPASAKWASGLTPAQNCPRALDGAWLMVSISSP-VLSLSSLLRPQPEPQQEPVLITMA 155
+ N + G + + + +P V +L P P
Sbjct: 128 FLQMTETTVKTAAWFMANMQVSGGGPSISLVMKTPRVTKNEALWHPTLNLPLSPQGTVRT 187
Query: 156 TVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGH 215
V V+T T + LG A LD F S+APG +EWR QH G+G
Sbjct: 188 AVEFQVMTQTQSLSFLLGSSASLDCGF-----------SMAPGLDLISVEWRLQHKGRGQ 236
Query: 216 LLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHL 275
L+ + T GQ A ++GA A + + LP + EGTY+ I
Sbjct: 237 LVYSWTA---GQGQAVRKGATLEPAQLG------MARDASLTLPGLTIQDEGTYICQITT 287
Query: 276 PYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGG 335
+ Q ++L + PKV L A A P L+C ++ +YP + V W R
Sbjct: 288 SLYRAQQIIQLNIQASPKVRLSLANEALL------PTLICDIAGYYPL-DVVVTW-TREE 339
Query: 336 PGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
GG + G + S+LR G+ S+S L P + GA Y C++ H SL
Sbjct: 340 LGGSPAQVSGASF-SSLRQSVAGTYSISSSLTAEPGSA---GATYTCQVTHISL 389
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 41.2 bits (95), Expect = 0.002
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 31/157 (19%)
Query: 37 GLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRF 96
GL++ P LL P PPP P L P G+ QAAF P P
Sbjct: 426 GLSEPPQPLLPASAPSAPPPAPSLGP----------GSQQAAFGNPPALLQPPE------ 469
Query: 97 VPLPASAKWASG---LTPAQNCPRAL-DGAWLMVSISSPVLSLSSLLRPQPEPQQ--EPV 150
VP+P S ++A+ P P+ + G ++ S+ +++S + PQ EP+
Sbjct: 470 VPVPHSTQFAANHQEFLPHPQAPQPIVPGLSVVAGASASAAAVASAVAAPAPPQSTTEPL 529
Query: 151 LITMATV------VLT---VLTHTPAPRVRLGQDALL 178
+ T+ VLT +T TP P + Q +L+
Sbjct: 530 PAMVQTLPLGANSVLTNNPTITITPTPNTAILQSSLV 566
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 39.3 bits (90), Expect = 0.007
Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 44/241 (18%)
Query: 3 SLSLLLAVALGLATAVSAG----PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRP 58
S +LL +ALG V A P + + + G GL R G LL+R+G P P P
Sbjct: 77 SRALLRLLALGSGAWVRARAVRRPPALGWALLGTSLGPGLGPRVGPLLVRRGETLPVPGP 136
Query: 59 D-----------LDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWAS 107
L P L+V + G + P P +S F + + +
Sbjct: 137 RVLETRPALQGLLGPGTRLAVTELRGRARLCPESGDSSRPPPPPVVSSFA-VSGTVRRLQ 195
Query: 108 G--------LTPAQNCPRAL---DGAWLMVS-----------------ISSPVLSLSSLL 139
G L +++C R L G W+ V+ + P LS L
Sbjct: 196 GVLGGTGDSLGVSRSCLRGLGLFQGEWVWVAQARESSNTSQPHLARVQVLEPRWDLSDRL 255
Query: 140 RPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGP 199
P P EP+ +A V T+ + + +G+ + + P + + SL PGP
Sbjct: 256 GPGSGPLGEPLADGLALVPATLAFNLGCDPLEMGELRIQRYLEGSIAPEDKGSCSLLPGP 315
Query: 200 P 200
P
Sbjct: 316 P 316
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 38.5 bits (88), Expect = 0.011
Identities = 52/204 (25%), Positives = 64/204 (31%), Gaps = 41/204 (20%)
Query: 35 GKGLAKRPGALLLRQGPGEPPPR--------------PDLDPELYLSVHDPAGALQAAFR 80
G+G R GAL GP PP PDL P + + D G+ Q F
Sbjct: 781 GRGRPGRAGALKAEAGPSAPPRALEGLRLPPMPWNVPPDLSPRVVDGIEDGCGSDQPKF- 839
Query: 81 RYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLR 140
+ G P C S P P SGL + P + + V LS +
Sbjct: 840 SFRVGQSGPECSSS---PSPGP---ESGLLTVPHGPSEARNTDTLDKLRQAVTELSEQVL 893
Query: 141 PQPEPQQEPVLITMATVVLTVLTHTPAPRVR-----------LGQDALLDL---SFAYMP 186
E Q L +VL P PR L Q +D S+ P
Sbjct: 894 QMREGLQS--LRQAVQLVLAPHREGPCPRASGEGPCPASTSGLLQPLCVDTGASSYCLQP 951
Query: 187 PTSEAASSL----APGPPPFGLEW 206
P S PGPPP W
Sbjct: 952 PAGSVLSGTWPHPRPGPPPLMAPW 975
>gi|155030211 major histocompatibility complex, class II, DR beta 1
precursor [Homo sapiens]
Length = 266
Score = 37.7 bits (86), Expect = 0.019
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 126 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 209
>gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo
sapiens]
Length = 264
Score = 37.7 bits (86), Expect = 0.019
Identities = 61/256 (23%), Positives = 89/256 (34%), Gaps = 55/256 (21%)
Query: 149 PVLITMATVVL-----TVLTHTPAPRVRLGQDALLDLS-------------FAYMPPTSE 190
P+L+T+ T +VLT P+ GQ + S + +P T+
Sbjct: 31 PLLLTLLTHCAGSWAQSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAP 90
Query: 191 AASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPW 250
+ P G+ R G A GL + E AAWDD
Sbjct: 91 KLLIYSNNQRPSGVPDRFSGSKSGTSASLAISGLQSE----DEADYYCAAWDDSL----- 141
Query: 251 TGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAP 310
NG PT F GT L + P VTL PP + A A
Sbjct: 142 --NG----PTCWVFGGGTKLTVLGQPKAAPSVTLF-----PPSSEELQANKAT------- 183
Query: 311 PELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPP 370
L+CL+S FYP G + V W+ P + + S+ + S +L P
Sbjct: 184 --LVCLISDFYP-GAVTVAWKADSSPVKAGVET------TTPSKQSNNKYAASSYLSLTP 234
Query: 371 VTTEQHGARYACRIHH 386
+ H + Y+C++ H
Sbjct: 235 EQWKSHRS-YSCQVTH 249
>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
Length = 266
Score = 37.0 bits (84), Expect = 0.033
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 176 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 209
>gi|239740859 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 37.0 bits (84), Expect = 0.033
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 127 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 176
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 177 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 210
>gi|239740857 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 37.0 bits (84), Expect = 0.033
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L H+ D + L+ P + G Y C++ HPS+
Sbjct: 176 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 209
>gi|239748415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 35.8 bits (81), Expect = 0.073
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 39 AKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAG-ALQAA---FRRYPRGAPAPHCEMS 94
A R G + +G E PP P L PEL + +P+G A+Q++ FRR P P +++
Sbjct: 67 ADREGEREVLRGQRESPPPPQLPPEL---LTNPSGSAIQSSPSRFRRVPADNAGPRRQLA 123
Query: 95 RFVPLPASAK 104
+ VPL A+
Sbjct: 124 KGVPLRPGAE 133
>gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo
sapiens]
Length = 208
Score = 35.8 bits (81), Expect = 0.073
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 39 AKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAG-ALQAA---FRRYPRGAPAPHCEMS 94
A R G + +G E PP P L PEL + +P+G A+Q++ FRR P P +++
Sbjct: 67 ADREGEREVLRGQRESPPPPQLPPEL---LTNPSGSAIQSSPSRFRRVPADNAGPRRQLA 123
Query: 95 RFVPLPASAK 104
+ VPL A+
Sbjct: 124 KGVPLRPGAE 133
>gi|24797076 major histocompatibility complex, class II, DP beta 1
precursor [Homo sapiens]
Length = 258
Score = 35.4 bits (80), Expect = 0.095
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 278 LQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPG 337
L G +TL+ V P+V++ P+ + P + L+C V+ FYP G ++V W L G
Sbjct: 112 LGGPMTLQRRVQ--PRVNVSPS---KKGPLQHHNLLVCHVTDFYP-GSIQVRWFLNG--- 162
Query: 338 GRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
++ G + +R+ D + + L+ P Q G Y C++ H SL
Sbjct: 163 --QEETAGVVSTNLIRN-GDWTFQILVMLEMTP----QQGDVYTCQVEHTSL 207
>gi|239753856 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 39 AKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAG-ALQAA---FRRYPRGAPAPHCEMS 94
A R G + +G E PP P L PEL + +P+G A+Q++ FRR P P ++
Sbjct: 67 ADREGEREVLRGQRESPPPPQLPPEL---LTNPSGSAIQSSPSRFRRVPADNAGPRRQLP 123
Query: 95 RFVPLPASAK 104
+ VPL A+
Sbjct: 124 KGVPLRPGAE 133
>gi|17986005 major histocompatibility complex, class II, DR beta 3
precursor [Homo sapiens]
Length = 266
Score = 34.7 bits (78), Expect = 0.16
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PQVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPAS 392
L + D + L+ P + G Y C++ HPS+ ++
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVTSA 212
>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-4 beta chain, partial [Homo sapiens]
Length = 223
Score = 34.7 bits (78), Expect = 0.16
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 283 TLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQK 342
T++ VY P+V++ PA + P + L+C V+ FYP G +EV W G Q+
Sbjct: 131 TVQRRVY--PEVTVYPA---KTQPLQHHNLLVCSVNGFYP-GSIEVRWFRNG------QE 178
Query: 343 AEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
+ + L + D + L+ P + G Y C++ HPSL
Sbjct: 179 EKTGVVSTGLIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSL 221
>gi|239740855 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 34.7 bits (78), Expect = 0.16
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 19/115 (16%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 127 PQVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 176
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKS 406
L + D + L+ P + G Y C++ HPS+ ++ +T+E + +S
Sbjct: 177 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV-----TSPLTVEWSARS 222
>gi|239740853 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 34.7 bits (78), Expect = 0.16
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 19/115 (16%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PQVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKS 406
L + D + L+ P + G Y C++ HPS+ ++ +T+E + +S
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV-----TSPLTVEWSARS 221
>gi|13994345 killer-specific secretory protein of 37 kDa precursor
[Homo sapiens]
Length = 223
Score = 34.7 bits (78), Expect = 0.16
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 13/76 (17%)
Query: 135 LSSLLRPQPEPQQE-----PVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTS 189
++S L+ PEP Q+ P L ATV LT T +LG+D++ +L A P T
Sbjct: 129 VTSSLKGSPEPNQQPEAGTPSLRPKATVKLTEAT-------QLGKDSMEELGKA-KPTTR 180
Query: 190 EAASSLAPGPPPFGLE 205
A PGP P G E
Sbjct: 181 PTAKPTQPGPRPGGNE 196
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 34.7 bits (78), Expect = 0.16
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 55 PPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQN 114
PP P L P LS H P P P P M + PLP+S GLT +QN
Sbjct: 410 PPPPALKPLSSLSTHHP-----------PSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQN 458
Query: 115 CP 116
P
Sbjct: 459 LP 460
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 34.7 bits (78), Expect = 0.16
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 55 PPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQN 114
PP P L P LS H P P P P M + PLP+S GLT +QN
Sbjct: 964 PPPPALKPLSSLSTHHP-----------PSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQN 1012
Query: 115 CP 116
P
Sbjct: 1013 LP 1014
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 34.7 bits (78), Expect = 0.16
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 55 PPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQN 114
PP P L P LS H P P P P M + PLP+S GLT +QN
Sbjct: 964 PPPPALKPLSSLSTHHP-----------PSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQN 1012
Query: 115 CP 116
P
Sbjct: 1013 LP 1014
>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain [Homo sapiens]
Length = 253
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 113 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 162
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 163 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 196
>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-9 beta chain [Homo sapiens]
Length = 266
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 209
>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 209
>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 124 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 173
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 174 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 207
>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 209
>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 34.3 bits (77), Expect = 0.21
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 124 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 173
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
L + D + L+ P + G Y C++ HPS+
Sbjct: 174 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,545,831
Number of Sequences: 37866
Number of extensions: 1293381
Number of successful extensions: 4780
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 4689
Number of HSP's gapped (non-prelim): 201
length of query: 412
length of database: 18,247,518
effective HSP length: 105
effective length of query: 307
effective length of database: 14,271,588
effective search space: 4381377516
effective search space used: 4381377516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.