TAPBP 24316

Name: TAPBP	Sequence: fasta or formatted (448aa)		NCBI GI: 27436893
Description: tapasin isoform 1 precursor		Referenced in: HLA and Related Proteins
Other entries for this name: alt prot [299aa] tapasin isoform 2 precursor alt prot [412aa] tapasin isoform 3 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 12.3 55 2 C cysteine 1.3 6 1 D aspartate 2.9 13 3 E glutamate 5.4 24 1 F phenylalanine 2.7 12 1 G glycine 9.2 41 2 H histidine 2.9 13 2 I isoleucine 1.1 5 1 K lysine 2.9 13 3 L leucine 14.5 65 3 M methionine 1.6 7 1 N asparagine 0.7 3 1 P proline 11.2 50 3 Q glutamine 4.0 18 2 R arginine 4.7 21 2 S serine 8.0 36 2 T threonine 4.5 20 2 V valine 5.8 26 2 W tryptophan 2.5 11 1 Y tyrosine 2.0 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tapasin isoform 1 precursor TAPBP 0.906 tapasin isoform 3 precursor TAPBP 0.639 tapasin isoform 2 precursor TAPBPL 0.058 TAP binding protein-like MTF1 0.018 metal-regulatory transcription factor 1 HLA-DRB1 0.017 major histocompatibility complex, class II, DR beta... LOC100290966 0.016 PREDICTED: hypothetical protein XP_002346811 LOC100294276 0.016 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.016 PREDICTED: similar to major histocompatibility comp... PEX6 0.016 peroxisomal biogenesis factor 6 KCNH3 0.016 potassium voltage-gated channel, subfamily H (eag-re... LOC100290481 0.015 PREDICTED: hypothetical protein XP_002348153 HLA-DRB3 0.013 major histocompatibility complex, class II, DR beta ... LOC100294036 0.013 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.013 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.013 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.013 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.013 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.013 PREDICTED: similar to HLA class II histocompatibili... LOC100294275 0.012 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.012 PREDICTED: similar to major histocompatibility comp... LOC100287256 0.012 PREDICTED: hypothetical protein LOC100287256 0.012 PREDICTED: hypothetical protein XP_002342497 HLA-DPB1 0.011 major histocompatibility complex, class II, DP beta ... C6orf132 0.011 PREDICTED: chromosome 6 open reading frame 132 [Hom... LOC100293496 0.011 PREDICTED: hypothetical protein C6orf132 0.011 PREDICTED: chromosome 6 open reading frame 132 [Hom... C6orf132 0.011 PREDICTED: hypothetical protein LOC647024 HLA-DRB4 0.011 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.011 PREDICTED: major histocompatibility complex, class ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.