Guide to the Human Genome
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Name: LOC100291995 Sequence: fasta or formatted (564aa) NCBI GI: 239757412
Description:

PREDICTED: hypothetical protein XP_002345272

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         46           2
 C cysteine            3.4         19           2
 D aspartate           4.3         24           2
 E glutamate           5.9         33           2
 F phenylalanine       2.1         12           1
 G glycine            11.7         66           3
 H histidine           5.0         28           1
 I isoleucine          1.4          8           1
 K lysine              2.1         12           1
 L leucine            12.4         70           2
 M methionine          0.5          3           1
 N asparagine          1.2          7           2
 P proline             9.2         52           2
 Q glutamine           5.3         30           2
 R arginine           10.8         61           3
 S serine              6.6         37           2
 T threonine           2.7         15           1
 V valine              3.0         17           1
 W tryptophan          3.4         19           1
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345272 
LOC100289978          0.734   PREDICTED: hypothetical protein XP_002348035 
LOC100288302          0.566   PREDICTED: hypothetical protein XP_002343738 
LOC100291242          0.017   PREDICTED: hypothetical protein XP_002348020 
LOC100287950          0.017   PREDICTED: hypothetical protein XP_002343699 
MRVI1                 0.014   JAW1-related protein isoform a 
MRVI1                 0.014   JAW1-related protein isoform b 
MRVI1                 0.014   JAW1-related protein isoform b 
ROBO3                 0.013   roundabout, axon guidance receptor, homolog 3 
LOC100292008          0.012   PREDICTED: similar to ZNF668 protein 
LOC100291370          0.012   PREDICTED: hypothetical protein XP_002347637 
LOC100287385          0.012   PREDICTED: hypothetical protein XP_002343487 
MRVI1                 0.012   JAW1-related protein isoform c 
KLHDC7B               0.010   kelch domain containing 7B 
DDN                   0.009   dendrin 
LOC100289661          0.008   PREDICTED: hypothetical protein 
LOC100289661          0.008   PREDICTED: hypothetical protein XP_002343723 
CDC42BPG              0.008   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
LOC100288181          0.008   PREDICTED: hypothetical protein XP_002342920 
MAST4                 0.008   microtubule associated serine/threonine kinase fami...
LOC100292572          0.008   PREDICTED: hypothetical protein 
LOC100288181          0.008   PREDICTED: hypothetical protein 
HMHA1                 0.007   minor histocompatibility antigen HA-1 
ATAD3A                0.007   ATPase family, AAA domain containing 3A 
TMEM181               0.007   G protein-coupled receptor 178 
EPDR1                 0.007   ependymin related protein 1 precursor 
ARID1B                0.007   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.007   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.007   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100293980          0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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