Guide to the Human Genome
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Name: LOC100292572 Sequence: fasta or formatted (412aa) NCBI GI: 239754987
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.1         54           2
 C cysteine            1.9          8           1
 D aspartate           1.7          7           1
 E glutamate           5.8         24           1
 F phenylalanine       1.2          5           1
 G glycine             9.7         40           2
 H histidine           3.6         15           1
 I isoleucine          0.5          2           1
 K lysine              1.9          8           1
 L leucine             9.0         37           2
 M methionine          0.5          2           1
 N asparagine          1.7          7           1
 P proline            12.6         52           2
 Q glutamine           6.1         25           2
 R arginine           12.6         52           3
 S serine              7.8         32           2
 T threonine           3.6         15           1
 V valine              3.6         15           2
 W tryptophan          1.9          8           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288181          0.855   PREDICTED: hypothetical protein 
LOC100288181          0.712   PREDICTED: hypothetical protein XP_002342920 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
LOC100131251          0.025   PREDICTED: hypothetical protein 
LOC100131251          0.025   PREDICTED: hypothetical protein 
C2orf55               0.025   hypothetical protein LOC343990 
LOC100130506          0.023   PREDICTED: hypothetical protein 
LOC100288911          0.023   PREDICTED: hypothetical protein XP_002342241 
OBSCN                 0.022   obscurin, cytoskeletal calmodulin and titin-interac...
LOC100290359          0.022   PREDICTED: hypothetical protein XP_002346414 
LOC100287202          0.022   PREDICTED: hypothetical protein XP_002342114 
PRRT2                 0.022   proline-rich transmembrane protein 2 
FLJ22184              0.019   PREDICTED: hypothetical protein FLJ22184 
LOC100132891          0.019   PREDICTED: hypothetical protein 
LOC100132891          0.019   PREDICTED: hypothetical protein 
LOC100132891          0.019   PREDICTED: hypothetical protein 
FLJ22184              0.018   PREDICTED: hypothetical protein LOC80164 
SAMD1                 0.018   sterile alpha motif domain containing 1 
CASKIN1               0.018   CASK interacting protein 1 
LOC729370             0.018   PREDICTED: hypothetical protein 
TAF4                  0.018   TBP-associated factor 4 
LOC100291538          0.017   PREDICTED: hypothetical protein XP_002347218 
LOC100291533          0.017   PREDICTED: hypothetical protein XP_002347080 
LOC100288751          0.017   PREDICTED: hypothetical protein XP_002343086 
LOC100288002          0.017   PREDICTED: hypothetical protein XP_002342946 
B4GALNT4              0.017   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
ZNF828                0.017   zinc finger protein 828 
MTX1                  0.017   metaxin 1 isoform 1 
MTX1                  0.017   metaxin 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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