Guide to the Human Genome
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Name: EPDR1 Sequence: fasta or formatted (344aa) NCBI GI: 24475586
Description:

ependymin related protein 1 precursor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         27           2
 C cysteine            2.3          8           1
 D aspartate           3.8         13           1
 E glutamate           3.8         13           1
 F phenylalanine       2.3          8           2
 G glycine             8.7         30           2
 H histidine           1.5          5           1
 I isoleucine          3.8         13           1
 K lysine              3.2         11           1
 L leucine             9.9         34           2
 M methionine          2.3          8           1
 N asparagine          1.7          6           1
 P proline             8.1         28           2
 Q glutamine           7.6         26           2
 R arginine            8.4         29           2
 S serine              9.6         33           2
 T threonine           4.9         17           1
 V valine              4.4         15           1
 W tryptophan          3.2         11           1
 Y tyrosine            2.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ependymin related protein 1 precursor 
HRNR                  0.013   hornerin 
EGR4                  0.013   early growth response 4 
LOC100291995          0.012   PREDICTED: hypothetical protein XP_002345272 
LAMA5                 0.012   laminin alpha 5 
LOC100292568          0.012   PREDICTED: hypothetical protein 
LOC100291146          0.012   PREDICTED: hypothetical protein XP_002346600 
LOC100289534          0.012   PREDICTED: hypothetical protein XP_002342442 
LOC728650             0.010   PREDICTED: hypothetical protein 
LOC100129906          0.010   PREDICTED: hypothetical protein 
LOC100129906          0.010   PREDICTED: hypothetical protein 
COL4A3                0.010   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.010   alpha 3 type IV collagen isoform 1 precursor 
COL17A1               0.010   alpha 1 type XVII collagen 
LOC100132369          0.009   PREDICTED: hypothetical protein 
LOC100293375          0.009   PREDICTED: hypothetical protein 
LOC100132369          0.009   PREDICTED: hypothetical protein 
LOC100287774          0.009   PREDICTED: hypothetical protein 
LOC100132369          0.009   PREDICTED: hypothetical protein 
LOC100129906          0.009   PREDICTED: hypothetical protein 
LOC100287774          0.009   PREDICTED: hypothetical protein XP_002342517 
CXorf49               0.009   hypothetical protein LOC100130361 
CXorf49B              0.009   hypothetical protein LOC100132994 
ANO8                  0.009   anoctamin 8 
COL21A1               0.009   collagen, type XXI, alpha 1 precursor 
TBC1D10B              0.009   TBC1 domain family, member 10B 
PCDHA13               0.009   protocadherin alpha 13 isoform 1 precursor 
LOC100132234          0.007   PREDICTED: hypothetical protein LOC100132234 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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