Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100293369 Sequence: fasta or formatted (211aa) NCBI GI: 239754498
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8          6           1
 C cysteine            4.7         10           1
 D aspartate           0.0          0           0
 E glutamate           0.9          2           2
 F phenylalanine       2.4          5           1
 G glycine             1.4          3           1
 H histidine          10.9         23           1
 I isoleucine         16.6         35           1
 K lysine              1.4          3           2
 L leucine             2.8          6           1
 M methionine          7.6         16           1
 N asparagine          0.0          0           0
 P proline             1.9          4           1
 Q glutamine           1.4          3           1
 R arginine            3.3          7           1
 S serine              0.9          2           1
 T threonine           9.5         20           1
 V valine              6.6         14           1
 W tryptophan          0.0          0           0
 Y tyrosine           24.6         52           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290974          0.951   PREDICTED: hypothetical protein XP_002346910 
LOC100132782          0.443   PREDICTED: hypothetical protein 
LOC100129642          0.390   PREDICTED: hypothetical protein 
LOC100134060          0.385   PREDICTED: hypothetical protein 
LOC100133807          0.370   PREDICTED: similar to serine/threonine-protein kina...
LOC100132679          0.363   PREDICTED: hypothetical protein 
LOC100133515          0.361   PREDICTED: hypothetical protein 
LOC100132983          0.361   PREDICTED: hypothetical protein 
LOC100288317          0.359   PREDICTED: hypothetical protein XP_002342505 
LOC100132107          0.354   PREDICTED: hypothetical protein 
LOC100131203          0.352   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.352   PREDICTED: similar to serine/threonine-protein kina...
LOC100134411          0.350   PREDICTED: hypothetical protein 
LOC100131203          0.350   PREDICTED: hypothetical protein 
LOC100133450          0.347   PREDICTED: hypothetical protein, partial 
LOC100287975          0.347   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100134332          0.343   PREDICTED: hypothetical protein, partial 
LOC100134325          0.336   PREDICTED: hypothetical protein 
LOC100293155          0.336   PREDICTED: hypothetical protein 
LOC100133226          0.336   PREDICTED: hypothetical protein 
LOC100129825          0.334   PREDICTED: hypothetical protein 
LOC100133173          0.334   PREDICTED: hypothetical protein 
LOC100289649          0.330   PREDICTED: hypothetical protein XP_002342367 
LOC100291751          0.325   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100132016          0.325   PREDICTED: hypothetical protein 
LOC100132423          0.323   PREDICTED: hypothetical protein, partial 
LOC100134279          0.321   PREDICTED: hypothetical protein, partial 
LOC100129802          0.321   PREDICTED: hypothetical protein 
LOC100134730          0.321   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press