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Search of human proteins with 239748716
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo
sapiens]
(267 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo ... 549 e-157
gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo ... 429 e-120
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 53 3e-07
gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens] 52 4e-07
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 52 7e-07
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 50 2e-06
gi|188536004 zinc finger protein 469 [Homo sapiens] 50 2e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 49 4e-06
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 47 2e-05
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 47 2e-05
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 47 2e-05
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 47 2e-05
gi|239508698 PREDICTED: similar to mucin [Homo sapiens] 47 2e-05
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 47 2e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 46 3e-05
gi|91208420 bassoon protein [Homo sapiens] 46 4e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 45 5e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 45 5e-05
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 45 5e-05
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 45 9e-05
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 44 1e-04
gi|33286446 opioid growth factor receptor [Homo sapiens] 44 1e-04
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 44 1e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 1e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 44 1e-04
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 44 1e-04
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 44 1e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 44 1e-04
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 44 1e-04
>gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo
sapiens]
Length = 267
Score = 549 bits (1415), Expect = e-157
Identities = 267/267 (100%), Positives = 267/267 (100%)
Query: 1 MDRGSGPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLR 60
MDRGSGPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLR
Sbjct: 1 MDRGSGPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLR 60
Query: 61 RGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQ 120
RGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQ
Sbjct: 61 RGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQ 120
Query: 121 KDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQ 180
KDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQ
Sbjct: 121 KDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQ 180
Query: 181 PRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDRE 240
PRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDRE
Sbjct: 181 PRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDRE 240
Query: 241 EGGPRQAPQGAGHALEGRGRVINGSVT 267
EGGPRQAPQGAGHALEGRGRVINGSVT
Sbjct: 241 EGGPRQAPQGAGHALEGRGRVINGSVT 267
>gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo
sapiens]
Length = 248
Score = 429 bits (1102), Expect = e-120
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 59 LRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSST 118
LRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSST
Sbjct: 40 LRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSST 99
Query: 119 SQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPL 178
SQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPL
Sbjct: 100 SQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPL 159
Query: 179 LQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSID 238
LQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSID
Sbjct: 160 LQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSID 219
Query: 239 REEGGPRQAPQGAGHALEGRGRVINGSVT 267
REEGGPRQAPQGAGHALEGRGRVINGSVT
Sbjct: 220 REEGGPRQAPQGAGHALEGRGRVINGSVT 248
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 52.8 bits (125), Expect = 3e-07
Identities = 64/222 (28%), Positives = 82/222 (36%), Gaps = 32/222 (14%)
Query: 56 RSPLRRGSCARGEKRPPGPTGGQWRWGV-SPRPSAASATGPPQDRAARGCE--LREGRAE 112
RSP R R E R TG Q G SP PS S G PQ G GR
Sbjct: 273 RSPSRLSPKHRDEGRK---TGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPG 329
Query: 113 AGHSSTSQKDTLS-----KGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRAR 167
+ HS + + S K +AAA T A GK P R + G G
Sbjct: 330 SAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSP----------RSAPSSQGRGGRA 379
Query: 168 PGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQS 227
GG+ G R + R+ + A + R ++RP P P ++RS RA+ S +
Sbjct: 380 AGGA--GRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRG 437
Query: 228 APAESGELSIDREEGG---------PRQAPQGAGHALEGRGR 260
AP E +R GG PR P + GR
Sbjct: 438 APGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGR 479
Score = 40.8 bits (94), Expect = 0.001
Identities = 70/274 (25%), Positives = 91/274 (33%), Gaps = 66/274 (24%)
Query: 3 RGSGPRGSPPGCKAALWSTLGGSMQQSAPT-----------GQWGIRADSSPRRRTVRTA 51
R + PRGS A S+ GS + AP G G RA P R +
Sbjct: 412 RPAPPRGSSRSLSRARSSSDSGS-GRGAPGPGPEPGSERGHGGHGKRAKERPPRARPAST 470
Query: 52 QPKERSPLRRGSC-ARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGR 110
P + RRG + R PGP W SP S + + E R
Sbjct: 471 SPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSA--------------EKR 516
Query: 111 AEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGG 170
+ S S K LS+ A +H TR ARRR + P R R
Sbjct: 517 PHSPSRSPSPKKPLSRDKDGEGRA----RHSEAEATR----ARRRSRSYSPIRKRRRDSP 568
Query: 171 SPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGS------AARSGRRAQRPG---- 220
S ++PR+I + + P RP P + S + RS R+ PG
Sbjct: 569 S------FMEPRRI----TSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSRSPSPGHSHG 618
Query: 221 -----------RKRSPQSAPAESGELSIDREEGG 243
R RSP P+ S E GG
Sbjct: 619 SYSSRSHGTRSRTRSPSRTPSPSYHSRSSSESGG 652
>gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens]
Length = 566
Score = 52.4 bits (124), Expect = 4e-07
Identities = 65/261 (24%), Positives = 100/261 (38%), Gaps = 30/261 (11%)
Query: 6 GPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCA 65
GP+G+PP + A ++L G+ + + PT + + T A+ + SP R +
Sbjct: 30 GPQGAPPFLEEAPSASLPGAERATPPT------REEPGKGLTAEAAREQSGSPCRAAGVS 83
Query: 66 RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLS 125
G G G +WR G P + + P + A G ELR E SS ++
Sbjct: 84 PG---TGGREGAEWRAGGREGPGPSPSPSPSPAKPA-GAELRRAFLERCLSSPVSAESFP 139
Query: 126 KGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQ--PRQ 183
G+AA A + A P PG P +PF P LQ P
Sbjct: 140 GGAAAVAAFSCSVAPAAAP---------------TPGEQFLLPLRAPF-PEPALQPDPAP 183
Query: 184 IFAPLQAITNQVRPQQRPEPPP--AGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREE 241
+ A LQ++ ++R + P A A +G + + RK S S L + +E
Sbjct: 184 LSAALQSLKRAAGGERRGKAPTDCASGPAAAGIKKPKAMRKLSFADEVTTSPVLGLKIKE 243
Query: 242 GGPRQAPQGAGHALEGRGRVI 262
P +G G + G I
Sbjct: 244 EEPGAPSRGLGGSRTPLGEFI 264
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 51.6 bits (122), Expect = 7e-07
Identities = 69/265 (26%), Positives = 95/265 (35%), Gaps = 25/265 (9%)
Query: 4 GSGPRGSPP--GCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRR 61
G+ P+G PP G G Q P G+ + R+ R+ K + P +
Sbjct: 44 GNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ 103
Query: 62 G-SCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQ 120
G + +G PPG G G + RP G PQ +G + R R+ G Q
Sbjct: 104 GGNQPQGPPPPPGKPQGPPPQGGN-RPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP---Q 159
Query: 121 KDTLSKGSAAAATAVAAGKHLAVPETRG----GVPARRRETANPPGPGRARPGGSPFGHR 176
G+ GK P G G P + PP ++R SP G +
Sbjct: 160 GPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPG-K 218
Query: 177 PLLQPRQIFAPLQAITNQVRPQQRPEPP--PAGSAARSGRRAQRPGRKRSPQSAPAESGE 234
P P Q +PQ P PP P G + G + Q P PQ PA+ G
Sbjct: 219 PQGPPPQ---------GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGS 269
Query: 235 LSIDREE--GGPRQAPQGAGHALEG 257
S G P+ PQ G+ +G
Sbjct: 270 KSQSARSPPGKPQGPPQQEGNNPQG 294
Score = 43.5 bits (101), Expect = 2e-04
Identities = 54/205 (26%), Positives = 74/205 (36%), Gaps = 19/205 (9%)
Query: 53 PKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAE 112
P+ SP + G+ +G PPG G G + +P G PQ +G + R R+
Sbjct: 36 PQGPSP-QGGNKPQGPPPPPGKPQGPPPQGGN-KPQGPPPPGKPQGPPPQGDKSRSPRSP 93
Query: 113 AGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSP 172
G Q G+ GK P G P PP PG+ + G P
Sbjct: 94 PGKP---QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQ------GPPPPGKPQ-GPPP 143
Query: 173 FGHR---PLLQPRQIFAPLQAITNQVRPQQRPEPP--PAGSAARSGRRAQRPGRKRSPQS 227
G + P P + P NQ PQ P PP P G + G++ Q P PQ
Sbjct: 144 QGDKSRSPRSPPGKPQGPPPQGGNQ--PQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQG 201
Query: 228 APAESGELSIDREEGGPRQAPQGAG 252
P + + + G Q P G
Sbjct: 202 PPPQGDKSRSSQSPPGKPQGPPPQG 226
Score = 38.9 bits (89), Expect = 0.005
Identities = 65/261 (24%), Positives = 89/261 (34%), Gaps = 50/261 (19%)
Query: 2 DRGSGPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQP----KERS 57
D+ PR SPPG K GG+ Q P + P + R P K +
Sbjct: 85 DKSRSPR-SPPG-KPQGPPPQGGNQPQGPPPPPG--KPQGPPPQGGNRPQGPPPPGKPQG 140
Query: 58 PLRRGSCARGEKRPPG------PTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRA 111
P +G +R + PPG P GG G P P G PQ +G + +G
Sbjct: 141 PPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPP------GKPQGPPPQGGKKPQGPP 194
Query: 112 EAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRG----GVPARRRETANPPGPGRAR 167
G + +G + ++ GK P G G P + PP G +
Sbjct: 195 PPG----KPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 250
Query: 168 PGGSPFGHRPLLQPRQIFAPLQAITN-----QVRPQQ-----------------RPEPPP 205
P G P +P P Q + Q+ + Q PQQ +P+ PP
Sbjct: 251 PQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPP 310
Query: 206 AGSAARSGRRAQRPGRKRSPQ 226
AG R Q R PQ
Sbjct: 311 AGQPQGPPRPPQGGRPSRPPQ 331
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 50.4 bits (119), Expect = 2e-06
Identities = 71/270 (26%), Positives = 87/270 (32%), Gaps = 40/270 (14%)
Query: 5 SGPRGSPPGCKAALWSTLGGSMQQSAPTGQWGI------RADSSPRRRTVRTAQPKERSP 58
SG +G PPG K A GS P G G+ R + PR + P ER
Sbjct: 2104 SGEQG-PPGLKGAKGEP--GSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGM 2160
Query: 59 L--RRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHS 116
+G + PPGP GG G P A GP +G E G +
Sbjct: 2161 AGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKG--------EPGET 2212
Query: 117 STSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPG----------RA 166
+ A L P+ G+P + ET P PG R
Sbjct: 2213 GPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRG 2272
Query: 167 RPG-----GSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGR 221
PG G P P +P AP QA+ P + E G A G PG
Sbjct: 2273 SPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVG--LPGAKGEKGAPGGLA--GDLVGEPGA 2328
Query: 222 K--RSPQSAPAESGELSIDREEGGPRQAPQ 249
K R E GE E G P + Q
Sbjct: 2329 KGDRGLPGPRGEKGEAGRAGEPGDPGEDGQ 2358
Score = 50.1 bits (118), Expect = 2e-06
Identities = 72/265 (27%), Positives = 94/265 (35%), Gaps = 45/265 (16%)
Query: 6 GPRG--SPPGCKAALWSTLGGSMQQSAP--TGQWGIRADSSPRRRTVRTAQPKERS---P 58
GP+G PPG K G + AP GQ G + PR +R P
Sbjct: 1433 GPQGPVGPPGKKGEK-----GDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGP 1487
Query: 59 LRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSST 118
L +GE+ PPGP G + GV+ RP A GPP +G + GR
Sbjct: 1488 LGEAG-EKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGR-------- 1538
Query: 119 SQKDTLSKGSAAAATAVAAGK-HLAVPETRGGVPARRRETANPPG---PGRARPGGSPFG 174
D G A A G A P GV R PPG PG P G P
Sbjct: 1539 -PGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGER----GPPGLVLPGDPGPKGDPGD 1593
Query: 175 HRPLLQPRQIFAPLQA-ITNQVRPQQRPEPP-PAGSAARSGRRAQR-----------PGR 221
P+ + P + + RP PP P G R G ++ PG+
Sbjct: 1594 RGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGK 1653
Query: 222 --KRSPQSAPAESGELSIDREEGGP 244
+R + AP G + ++G P
Sbjct: 1654 AGERGLRGAPGVRGPVGEKGDQGDP 1678
Score = 36.2 bits (82), Expect = 0.031
Identities = 66/259 (25%), Positives = 83/259 (32%), Gaps = 55/259 (21%)
Query: 6 GPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSP------- 58
GPRG P G A +GG + G+ G S P P R P
Sbjct: 1341 GPRG-PKGEPGAPGQVIGG--EGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTA 1397
Query: 59 LRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSST 118
++ RGE+ PPGP G G P + GP G + +G +E G
Sbjct: 1398 MKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDG---- 1453
Query: 119 SQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPL 178
G+P + P PG P G P P
Sbjct: 1454 ----------------------------APGLPGQ------PGSPGEQGPRGPPGAIGP- 1478
Query: 179 LQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSID 238
R PL + +R P PAGS G A RPG K P+ P +G
Sbjct: 1479 KGDRGFPGPLGEAGEK---GERGPPGPAGSRGLPG-VAGRPGAK-GPEGPPGPTGRQGEK 1533
Query: 239 REEGGPRQAPQGAGHALEG 257
E G P P G A+ G
Sbjct: 1534 GEPGRPGD-PAVVGPAVAG 1551
Score = 34.7 bits (78), Expect = 0.089
Identities = 36/123 (29%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 5 SGPRGS-----PPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERS-- 57
SGP+G PPG L T G+ ++ P G G P+ P ER
Sbjct: 1690 SGPKGDRGEPGPPGPPGRLVDTGPGAREKGEP-GDRGQEGPRGPKGDPGLPGAPGERGIE 1748
Query: 58 -----------PLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCEL 106
P RG GEK GP G R G+ +P AA +GP G
Sbjct: 1749 GFRGPPGPQGDPGVRGPA--GEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPG 1806
Query: 107 REG 109
R+G
Sbjct: 1807 RDG 1809
Score = 31.6 bits (70), Expect = 0.76
Identities = 61/229 (26%), Positives = 75/229 (32%), Gaps = 25/229 (10%)
Query: 2 DRGS-GPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLR 60
DRG GP+G PPG G S P G+ GI +P ER
Sbjct: 2007 DRGDPGPQG-PPGLALGERGPPGPSGLAGEP-GKPGIPGLPGRAGGVGEAGRPGER---- 2060
Query: 61 RGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQ 120
GE+ G G Q R G P GPP G ++ G S
Sbjct: 2061 ------GERGEKGERGEQGRDGPPGLPGTPGPPGPP------GPKVSVDEPGPGLSGEQG 2108
Query: 121 KDTL--SKGSAAAATAVAAGKHLAVPETRG--GVPARRRETANPPGPGRARPGGSPFGHR 176
L +KG + VP +G G P R + NP PG G P G
Sbjct: 2109 PPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAG-PEGKP 2167
Query: 177 PLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSP 225
L PR P+ + P PAG SG + + PG P
Sbjct: 2168 GLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGE-PGETGPP 2215
Score = 31.2 bits (69), Expect = 0.99
Identities = 55/212 (25%), Positives = 73/212 (34%), Gaps = 45/212 (21%)
Query: 50 TAQPK-ERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELRE 108
T QP+ E P+ C +G+K PG G + + G P TG P + G +
Sbjct: 1239 TTQPRPEPCPVY---CPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAK 1295
Query: 109 GRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANP--PG---- 162
G +G A + R G P R P PG
Sbjct: 1296 G---------------ERGFPGA-------------DGRPGSPGRAGNPGTPGAPGLKGS 1327
Query: 163 PGRARPGGSPFGHRPLLQPRQIFAPLQAITNQ--VRPQQRPEPPPAGSAARSGRRAQRPG 220
PG P G P P + AP Q I + P ++ +P P+G G PG
Sbjct: 1328 PGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGD-PG 1386
Query: 221 RKRSPQSAP--AESGELSIDREEGGPRQAPQG 250
R P P A G+ DR E GP +G
Sbjct: 1387 -PRGPPGLPGTAMKGDKG-DRGERGPPGPGEG 1416
Score = 31.2 bits (69), Expect = 0.99
Identities = 67/262 (25%), Positives = 89/262 (33%), Gaps = 46/262 (17%)
Query: 28 QSAPTGQWGIRADSSPRRRTVRTAQP-KERSPLRRGSCARGEKRPPGPTGGQWRWGVSPR 86
+S G+ G S P + P ++ P RG +G P GP G + G +
Sbjct: 1780 RSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGE--QGLPGPSGPPGLPGKPGEDGK 1837
Query: 87 PSAASATGPPQDRAARGCELREG-RAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPE 145
P G P D G R+G + ++G S +D KG A + +P
Sbjct: 1838 PGLNGKNGEPGDPGEDG---RKGEKGDSGASGREGRDG-PKGERGAPGILGPQGPPGLPG 1893
Query: 146 TRG-------GVP------ARRRETANPPGPG-------RARPGGSPFGHRPLLQP---- 181
G GVP R ET + G R PG P R LL+
Sbjct: 1894 PVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDR-LLETAGIK 1952
Query: 182 ----RQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSI 237
R+I + P P G + G P K P P E G L
Sbjct: 1953 ASALREIVETWDESSGSFLPVPERRRGPKGDSGEQG-----PPGKEGPIGFPGERG-LKG 2006
Query: 238 DREEGGPRQAPQGAGHALEGRG 259
DR + GP+ P G AL RG
Sbjct: 2007 DRGDPGPQGPP---GLALGERG 2025
Score = 28.5 bits (62), Expect = 6.4
Identities = 59/262 (22%), Positives = 84/262 (32%), Gaps = 47/262 (17%)
Query: 6 GPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPL----RR 61
GP+G P G TG+ G DS P +P P+ R
Sbjct: 1586 GPKGDP------------GDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRD 1633
Query: 62 GSCA-RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQ 120
G +G++ PPG G + G A GP ++ +G +GR + SS +
Sbjct: 1634 GEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPK 1693
Query: 121 KDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQ 180
D G G + +T G RE P G+ P G P
Sbjct: 1694 GDRGEPG--------PPGPPGRLVDTGPGA----REKGEPGDRGQEGPRG------PKGD 1735
Query: 181 PRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDRE 240
P AP + R P+ P + P ++ + P G +D +
Sbjct: 1736 PGLPGAPGERGIEGFRGPPGPQGDPG---------VRGPAGEKGDRGPPGLDGRSGLDGK 1786
Query: 241 EG--GPRQAPQGAGHALEGRGR 260
G GP P GA GR
Sbjct: 1787 PGAAGP-SGPNGAAGKAGDPGR 1807
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 50.4 bits (119), Expect = 2e-06
Identities = 64/252 (25%), Positives = 94/252 (37%), Gaps = 39/252 (15%)
Query: 6 GPRGS--------PPGCKAALWSTLGGSMQQSA------PTGQWGIRADSSPRRRT---V 48
GPRG+ P GC+++ S A P G A R T +
Sbjct: 3632 GPRGTFHKGSATKPAGCQSSSKDRSAASTPSKALKFPVHPRKAVGSLAPGELARGTENGM 3691
Query: 49 RTAQPKER-SPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELR 107
+ A PK + P +GS G RP TGG G P+P++ A+
Sbjct: 3692 KPATPKAKPGPSSQGS---GSPRPGTKTGG----GSQPQPASGQLQSETATTPAKPSFPS 3744
Query: 108 EGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRAR 167
A + +Q + +KG A G H ++ G + +R+ PGP R+
Sbjct: 3745 RSPAPERLPARAQAKSCTKGPREAGEQ---GPHGSLGPKEKGESSTKRKKGQVPGPARSE 3801
Query: 168 PGGSPFGH------RPLLQPRQIFAPLQAITNQVRP--QQRPEPPPAGSAARSGRRAQRP 219
GS FG +P PR+ P + + + +P Q +P PPP+ QR
Sbjct: 3802 SVGS-FGRAPSAPDKPPRTPRKQATPSRVLPTKPKPNSQNKPRPPPSEQRKAEPGHTQRK 3860
Query: 220 GR--KRSPQSAP 229
R K PQ P
Sbjct: 3861 DRLGKAFPQGRP 3872
Score = 44.7 bits (104), Expect = 9e-05
Identities = 63/250 (25%), Positives = 85/250 (34%), Gaps = 39/250 (15%)
Query: 4 GSGPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRA-----DSSPRRRTVR-------TA 51
G PRG+PP T+ G +Q G + D++P RT + A
Sbjct: 3 GERPRGAPP-------PTMTGDLQPRQVASSPGHPSQPPLEDNTPATRTTKGAREAGGQA 55
Query: 52 QPKERSPLRRGSCARGEKRPPG-----PTGGQWRWGVSPRPSAASATGPPQDRAARGCEL 106
Q E + GE +PP P+ + G P S P A R
Sbjct: 56 QAMELPEAQPRQARDGELKPPSLRGQAPSSTPGKRGSPQTPPGRSPLQAPSRLAGRAEGS 115
Query: 107 REGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRG-GVPARRRETANPPGPGR 165
R G +S+ K TL + A + P+ G G P R PG R
Sbjct: 116 PPQRYILGIASSRTKPTLDETPENPQLEAAQLPEVDTPQGPGTGAPLR-------PGLPR 168
Query: 166 --ARPGGSPFG-HRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRK 222
A+P G HR +P F TN P P PP G G +PG
Sbjct: 169 TEAQPAAEELGFHRCFQEPPSSFTS----TNYTSPSATPRPPAPGPPQSRGTSPLQPGSY 224
Query: 223 RSPQSAPAES 232
Q++ A+S
Sbjct: 225 PEYQASGADS 234
Score = 42.4 bits (98), Expect = 4e-04
Identities = 57/242 (23%), Positives = 88/242 (36%), Gaps = 31/242 (12%)
Query: 23 GGSMQQSAPTG----QWGIRADSSPRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQ 78
G +QQ+ P G + G R + +R K R+P RG CA +
Sbjct: 3560 GPLLQQALPLGASLPRPGARGQDAEGKRAPLVFSGKRRAPGARGRCAPDHFQED------ 3613
Query: 79 WRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAG 138
+ + S++ + RG + + +S KD + + + A
Sbjct: 3614 ---HLLQKEKEVSSSHMVSEGGPRGTFHKGSATKPAGCQSSSKDRSAASTPSKALKFPVH 3670
Query: 139 KHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGH---RPLL------QPRQIFAPLQ 189
AV G AR E P +A+PG S G RP QP+ LQ
Sbjct: 3671 PRKAVGSLAPGELARGTENGMKPATPKAKPGPSSQGSGSPRPGTKTGGGSQPQPASGQLQ 3730
Query: 190 A--ITNQVRP-----QQRPEPPPAGSAARSGRRAQRPGRKRSPQSA--PAESGELSIDRE 240
+ T +P PE PA + A+S + R ++ P + P E GE S R+
Sbjct: 3731 SETATTPAKPSFPSRSPAPERLPARAQAKSCTKGPREAGEQGPHGSLGPKEKGESSTKRK 3790
Query: 241 EG 242
+G
Sbjct: 3791 KG 3792
Score = 40.0 bits (92), Expect = 0.002
Identities = 70/281 (24%), Positives = 84/281 (29%), Gaps = 62/281 (22%)
Query: 36 GIRADSSPRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQW---------------R 80
G RAD +PR + RS RR R + R GG W R
Sbjct: 1003 GSRADPAPRVPRAAALPEETRSSRRRRLPPRKDPRKRKARGGAWGKELILKIVQQKNRLR 1062
Query: 81 WGVSPRPSAASATGPPQDRAARGCELR-EGRAEAGHSSTSQKDTLSKGSAAAATAVAAGK 139
S PP+ RG R E R E + ++D K AA
Sbjct: 1063 EYDFASESEEDEQPPPRGPGFRGRRGRGEKRKEVELTQGPREDEPQKPRKAARQEAGGDG 1122
Query: 140 HLAVPETRGGVPARRRETANPPGPGR-------ARPGGSPFGHRPLLQPRQIFAPLQAIT 192
A PE GG + GP R AR GG RP + P+ PLQ T
Sbjct: 1123 APANPEEPGGSRPGPGRSPQARGPSRSLETGAAAREGGPKCADRPSVAPKD---PLQVPT 1179
Query: 193 NQVR----------PQQRPEP-------------------PPAGSAARSGRR-----AQR 218
N PQ+ EP PPA A G ++
Sbjct: 1180 NTETSEETRPSLDFPQEAKEPETAEESAPDSTEFTEALRSPPAACAGEMGASPGLLIPEQ 1239
Query: 219 PGRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGRG 259
P R P SG L+ G G G L G G
Sbjct: 1240 PPPSRHDTGTPKPSGSLANTAPHGS--SPTPGVGSLLGGPG 1278
Score = 29.3 bits (64), Expect = 3.8
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
Query: 84 SPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAV 143
+PRP A GPPQ R +S Q + + A+ A + +
Sbjct: 202 TPRPPAP---GPPQSRG---------------TSPLQPGSYPEYQASGADSWPPAAENSF 243
Query: 144 PETRGGVPARRRETANPPGPGRARPGGSPFG 174
P GVP E P P +RPGGSP G
Sbjct: 244 PGANFGVPPAEPE----PIPKGSRPGGSPRG 270
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 49.3 bits (116), Expect = 4e-06
Identities = 74/278 (26%), Positives = 95/278 (34%), Gaps = 46/278 (16%)
Query: 4 GSGPRG--SPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQP---KERSP 58
G+ P+G SPPG K GG+ Q P G P+ P K + P
Sbjct: 44 GNKPQGPPSPPG-KPQGPPPQGGNQPQGPPPPP-GKPQGPPPQGGNKPQGPPPPGKPQGP 101
Query: 59 LRRGSCARGEKRPPG------PTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAE 112
+G +R + PPG P GG G P P G PQ +G +G
Sbjct: 102 PPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPP------GKPQGPPPQGGNKPQGPPP 155
Query: 113 AG--HSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRG----GVPARRRETANPPGPGRA 166
G Q D S+ S + GK P G G P + PP G
Sbjct: 156 PGKPQGPPPQGDNKSRSSRSPP-----GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 210
Query: 167 RPGGSPFGHRPLLQPRQIFAPLQAITNQV------------RPQQRPEPP--PAGSAARS 212
+P G P +P P Q Q+ + +PQ P PP P G +
Sbjct: 211 KPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 270
Query: 213 GRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQG 250
G + Q P PQ P + G S R P PQG
Sbjct: 271 GNKPQGPPPPGKPQGPPPQGGSKS--RSSRSPPGKPQG 306
Score = 48.1 bits (113), Expect = 8e-06
Identities = 69/285 (24%), Positives = 96/285 (33%), Gaps = 40/285 (14%)
Query: 2 DRGSGPRGSPPGCKAALWSTLGGSMQQS---------APTGQWGIRADSSPRRRTVRTAQ 52
D+ PR SPPG K GG+ Q P Q G + P +
Sbjct: 106 DKSRSPR-SPPG-KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 163
Query: 53 PKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAE 112
P+ + R G+ + P P GG G P P G PQ +G +G
Sbjct: 164 PQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP------GKPQGPPPQGGNKPQGPPP 217
Query: 113 AGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRG----GVPARRRETANPPGPGRARP 168
G +K +A + GK P G G P + PP G +P
Sbjct: 218 PGKPQGPPPQGDNKSQSARSPP---GKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 274
Query: 169 GGSPFGHRPLLQPRQIFAPLQAITNQV------------RPQQRPEPP--PAGSAARSGR 214
G P +P P Q + ++ + +PQ P PP P G + G
Sbjct: 275 QGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN 334
Query: 215 RAQRPGRKRSPQSAPAESGELSIDREE--GGPRQAPQGAGHALEG 257
+ Q P PQ P + G S G P+ PQ G+ +G
Sbjct: 335 KPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQG 379
Score = 35.4 bits (80), Expect = 0.052
Identities = 59/249 (23%), Positives = 79/249 (31%), Gaps = 46/249 (18%)
Query: 4 GSGPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGS 63
G+ P+G PP G Q P G G + P + P+ + +
Sbjct: 188 GNQPQGPPPP---------PGKPQGPPPQG--GNKPQGPPPPGKPQGPPPQGDNKSQSAR 236
Query: 64 CARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDT 123
G+ + P P GG G P P G PQ +G +G G Q
Sbjct: 237 SPPGKPQGPPPQGGNQPQGPPPPP------GKPQGPPPQGGNKPQGPPPPGKP---QGPP 287
Query: 124 LSKGSAAAATAVAAGKHLAVPETRG----GVPARRRETANPPGPGRARPGGSPFGHRPLL 179
GS + ++ GK P G G P + PP G +P G P +P
Sbjct: 288 PQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 347
Query: 180 QPRQIFA---------------PLQAITNQVRPQ-------QRPEPPPAGSAARSGRRAQ 217
P Q + P Q N P Q+P+ PPAG R Q
Sbjct: 348 PPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQ 407
Query: 218 RPGRKRSPQ 226
R PQ
Sbjct: 408 GGRPSRPPQ 416
Score = 34.3 bits (77), Expect = 0.12
Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query: 83 VSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLA 142
VS S + G PQ +G +G Q G+ GK
Sbjct: 23 VSQEESPSLIAGNPQGAPPQGGNKPQGPPSP--PGKPQGPPPQGGNQPQGPPPPPGKPQG 80
Query: 143 VPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPE 202
P G P + PPG + P P P + P NQ PQ P
Sbjct: 81 PPPQGGNKP----QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQ--PQGPPP 134
Query: 203 PP--PAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQG 250
PP P G + G + Q P PQ P + S R P PQG
Sbjct: 135 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKS--RSSRSPPGKPQG 182
Score = 31.6 bits (70), Expect = 0.76
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 7/96 (7%)
Query: 159 NPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPP--PAGSAARSGRRA 216
NP G A P G P P + P NQ PQ P PP P G + G +
Sbjct: 35 NPQG---APPQGGNKPQGPPSPPGKPQGPPPQGGNQ--PQGPPPPPGKPQGPPPQGGNKP 89
Query: 217 QRPGRKRSPQSAPAESGELSIDREEGGPRQAPQGAG 252
Q P PQ P + + R G Q P G
Sbjct: 90 QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQG 125
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 47.0 bits (110), Expect = 2e-05
Identities = 59/208 (28%), Positives = 81/208 (38%), Gaps = 38/208 (18%)
Query: 39 ADSSPRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQD 98
A SPRR + ++P+ R P+ G + P G + RW RP QD
Sbjct: 1038 ATISPRRHAMPGSRPRSRIPVLLSEEDTGSE-PSGSLSAKERWSKRARPQ--------QD 1088
Query: 99 RAARGCELREGR-----AEAGHSSTSQK-----DTLSKGSAAAATAVAAGKHLAVPETRG 148
A E R+GR A SS+S++ +TLS G+ + A+ A+P G
Sbjct: 1089 LARLVMEKRQGRLLLRLASGASSSSSEEQRRASETLS-GTGSEEDTPASEPAAALPRKSG 1147
Query: 149 GVPARRRETANP-----PGPGRAR-PGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPE 202
A R P P P A+ P G P L AIT++++ Q
Sbjct: 1148 RAAATRSRIPRPIGLRMPMPVAAQQPASRSHGAAPALDT--------AITSRLQLQT--- 1196
Query: 203 PPPAGSAARSGRRAQRPGRKRSPQSAPA 230
PP + A R Q PGR P A A
Sbjct: 1197 -PPGSATAADLRPKQPPGRGLGPGRAQA 1223
Score = 34.3 bits (77), Expect = 0.12
Identities = 54/214 (25%), Positives = 74/214 (34%), Gaps = 45/214 (21%)
Query: 51 AQPKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGR 110
++P P + G A R P P G + P P AA Q A+R G
Sbjct: 1136 SEPAAALPRKSGRAAATRSRIPRPIGLRM-----PMPVAA------QQPASRS----HGA 1180
Query: 111 AEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRAR-PG 169
A A ++ + + L +A A K P RG P R + A PP P R P
Sbjct: 1181 APALDTAITSRLQLQTPPGSATAADLRPKQ---PPGRGLGPGRAQAGARPPAPRSPRLPA 1237
Query: 170 GSPFGHRPLLQPRQIFAPLQAITNQVRP----QQRP-EPPPAGSAARSGRRAQRPGRKRS 224
+ PR Q+++ + P Q RP PPP G P +
Sbjct: 1238 STSAARNASASPRS-----QSLSRRESPSPSHQARPGVPPPRGV----------PPARAQ 1282
Query: 225 PQSAPAESGELSIDREEGGPRQAPQGAGHALEGR 258
P P+ G + GPR Q +GR
Sbjct: 1283 PDGTPSPGG------SKKGPRGKLQAQRATTKGR 1310
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 47.0 bits (110), Expect = 2e-05
Identities = 70/261 (26%), Positives = 91/261 (34%), Gaps = 25/261 (9%)
Query: 2 DRGSGPRGS----PPGCKAALWSTLGGSMQQSAPTGQWGIRA-DSSPRRRTVRTAQPKER 56
DRG P PPG A + L S +A + G+ D S R T A+P+
Sbjct: 288 DRGPEPGPPAPLPPPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAEPESA 347
Query: 57 SPLRRGSCARGEKRP-PGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGH 115
LR + E P PGP GG+ P A AT D+A E A
Sbjct: 348 PTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPAT----DKAEEVVCAPEDVASPFP 403
Query: 116 SSTSQKDTLSKGSAAAATAVAA----GKHLAVP-ETRGGVPARRRETANPPGPGRARPGG 170
++ + DT + AAT+ A G +VP E P E PPGP
Sbjct: 404 TAIPEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGPAP----- 458
Query: 171 SPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSP----- 225
P R + I + P PP S + A G SP
Sbjct: 459 EPEREAETEPERGAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAA 518
Query: 226 QSAPAESGELSIDREEGGPRQ 246
+S P E G S+D E P +
Sbjct: 519 ESPPVEPGPGSLDAEAAAPER 539
Score = 35.4 bits (80), Expect = 0.052
Identities = 47/183 (25%), Positives = 62/183 (33%), Gaps = 32/183 (17%)
Query: 85 PRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAA-ATAVAAGKHLAV 143
P P + PP AR RA HSS G ++ A LA
Sbjct: 291 PEPGPPAPLPPPGGARAR-------RARLQHSSALTASVEEGGVPGEDPSSRPATPELAE 343
Query: 144 PETRGGVPARRRETANPP-GPGRARP-GGSPFGHRP---------------LLQPRQIFA 186
PE+ P R E +PP GP P GG G P + P + +
Sbjct: 344 PES---APTLRVEPPSPPEGPPNPGPDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDVAS 400
Query: 187 PLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQ 246
P P+ PP AA S + R G +RS + + D E+G P
Sbjct: 401 PFPTAI----PEGDTTPPETDPAATSEAPSARDGPERSVPKEAEPTPPVLPDEEKGPPGP 456
Query: 247 APQ 249
AP+
Sbjct: 457 APE 459
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 47.0 bits (110), Expect = 2e-05
Identities = 63/261 (24%), Positives = 83/261 (31%), Gaps = 38/261 (14%)
Query: 7 PRGSPPGCKAALWSTLGGSMQQS---------APTGQWGIRADSSPRRRTVRTAQPKERS 57
P G PP GG+ Q P Q G ++ P R QP +
Sbjct: 57 PEGRPPQ---------GGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGG 107
Query: 58 PLRRGSCAR-GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHS 116
+G R G+ P P GG G PRP P ++G R G+ E
Sbjct: 108 NQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEG--- 164
Query: 117 STSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHR 176
Q S+G +++G P + PP G G P +
Sbjct: 165 PPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGK 224
Query: 177 PLLQPRQIFAPLQAITNQVRPQQRPEPP--PAGSAARSGRRAQRPGRKRSPQSAPAESG- 233
P P Q +PQ P P P G + G + QRP PQ P G
Sbjct: 225 PEGPPSQ---------GGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPPPPGGN 275
Query: 234 -ELSIDREEG---GPRQAPQG 250
+ + G GP PQG
Sbjct: 276 PQQPLPPPAGKPQGPPPPPQG 296
Score = 45.8 bits (107), Expect = 4e-05
Identities = 60/238 (25%), Positives = 76/238 (31%), Gaps = 58/238 (24%)
Query: 3 RGSGPRGSPPGCKAALWSTLGGSMQQS---------APTGQWGIRADSSPRRRTVRTAQP 53
R P G PP GG+ Q P Q G ++ P R P
Sbjct: 116 RPGKPEGPPPQ---------GGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPP 166
Query: 54 KERSPLRRGSCAR-GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAE 112
+ +G G+ P P GG G PRP P ++G R G+ E
Sbjct: 167 PQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPE 226
Query: 113 AGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRAR----P 168
S G+ GK P G P R PP PGR + P
Sbjct: 227 GPPS--------QGGNKPQGPPPHPGKPQGPPPQEGNKPQR------PPPPGRPQGPPPP 272
Query: 169 GGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQ 226
GG+P +PL P +PQ P PP G R RP + + PQ
Sbjct: 273 GGNP--QQPLPPPAG------------KPQGPPPPPQGG-------RPHRPPQGQPPQ 309
Score = 42.0 bits (97), Expect = 6e-04
Identities = 55/238 (23%), Positives = 78/238 (32%), Gaps = 26/238 (10%)
Query: 20 STLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCARGEKRP-----PGP 74
S + G + P G + P+R +P+ R P RP P P
Sbjct: 30 SVISGKPEGRRPQG------GNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPP 83
Query: 75 TGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATA 134
GG G PRP P ++G R G+ E Q S+G
Sbjct: 84 QGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPE---GPPPQGGNQSQGPPPRPGK 140
Query: 135 VAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQ 194
+++G P + PP G G P +P P Q Q+
Sbjct: 141 PEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQ--GGNQSQGPP 198
Query: 195 VRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQ--APQG 250
RP + PPP G G P R P+ P++ G ++ +G P PQG
Sbjct: 199 PRPGKPEGPPPQGGNQSQG----PPPRPGKPEGPPSQGG----NKPQGPPPHPGKPQG 248
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 46.6 bits (109), Expect = 2e-05
Identities = 80/284 (28%), Positives = 106/284 (37%), Gaps = 59/284 (20%)
Query: 2 DRGSGPRGSPPGCKAALWST---LGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSP 58
D GS P S GC +T + GS Q S S R R T ++ P
Sbjct: 263 DVGSAPSRSLRGCSLRFRNTPPPIPGSDQPS-----------SHGRPRFRETGDSEDCPP 311
Query: 59 LRRGSCARGEKRP----PGP-----TGGQWRWGVSPRPSAASATGPPQDRAARGCELREG 109
R G+ + P PGP TG +W + PRP+ A P A++
Sbjct: 312 FRAGTPPQQPTAPSSEWPGPQRSPGTGPRWTAPL-PRPAPLPAKRPGDSPASK------- 363
Query: 110 RAEAGHSSTSQKDTLSKGSAAAATAVAAGK----HLAVPETRGG--VPARRRETANP--- 160
R G S +D KG ++ AAG+ + P+ GG + + RE P
Sbjct: 364 RPRPGGVSPEARDP-PKGENPLCSSEAAGETGPTQVRGPDALGGGRLQGKGREGKAPGEG 422
Query: 161 --PGPGRARPGGSPFGHRP--LLQPRQIFAPLQAITNQVRPQ-QRPEPPPAGSA-ARSGR 214
P P R G P P L QP + F ++ V + +R +G A ARSG
Sbjct: 423 VSPRPAPPRLGKPPRSRPPQGLAQPPETFFFERSRLVPVSAELERAGHGFSGDAEARSGD 482
Query: 215 RAQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGR 258
RP + S SAPA P Q PQ A H GR
Sbjct: 483 LGARPASRSSLPSAPAP------------PAQQPQAARHGAAGR 514
>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
Length = 265
Score = 46.6 bits (109), Expect = 2e-05
Identities = 56/233 (24%), Positives = 82/233 (35%), Gaps = 48/233 (20%)
Query: 27 QQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPR 86
QQ A + A +P RT + K + P R + G++R G + + G R
Sbjct: 79 QQRAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAGGTGQRRGSGSSPSADQQGAQDR 138
Query: 87 PSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPET 146
A+A P R GH + +K + AA T G +
Sbjct: 139 EEEAAAAPAPTSR--------------GHRTEKRKPQQPQRRPAAGTGQRRGSRSSPSAD 184
Query: 147 RGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPA 206
+ G R E A P P + GHR + RQ +PQ RP
Sbjct: 185 QQGAQDREEEAAAAPVP-------TSRGHRTEKRKRQ------------QPQCRP----- 220
Query: 207 GSAARSGRRAQRPGRKRSPQSAPAESGELSIDR-EEGGPRQAPQGAGHALEGR 258
A G++R +S+P+ + + DR EE AP +GH E R
Sbjct: 221 ---------AAGTGQRRGSRSSPSADQQRAQDREEEAAAAPAPTSSGHRTEKR 264
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/240 (22%), Positives = 85/240 (35%), Gaps = 46/240 (19%)
Query: 26 MQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQWRWGVSP 85
+++S+ QW + P R ++ P + + G++R G + + G
Sbjct: 15 LRESSEGDQWLENEKTKPLR--------PQQQPQCQPAGGTGQRRGSGSSPSADQQGAQD 66
Query: 86 RPSAASATGPPQDRAARGCELREGRAEA----GHSSTSQKDTLSKGSAAAATAVAAGKHL 141
R A+A + A+ E A A GH + +K + A T G
Sbjct: 67 REEEAAAAPAADQQRAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAGGTGQRRGSGS 126
Query: 142 AVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRP 201
+ + G R E A P P + GHR T + +PQQ
Sbjct: 127 SPSADQQGAQDREEEAAAAPAP-------TSRGHR---------------TEKRKPQQPQ 164
Query: 202 EPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDR-EEGGPRQAPQGAGHALEGRGR 260
P AG+ G++R +S+P+ + + DR EE P GH E R R
Sbjct: 165 RRPAAGT-----------GQRRGSRSSPSADQQGAQDREEEAAAAPVPTSRGHRTEKRKR 213
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 46.6 bits (109), Expect = 2e-05
Identities = 48/185 (25%), Positives = 67/185 (36%), Gaps = 14/185 (7%)
Query: 67 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSK 126
G+ + P P GG G P P G P+ R +G +G H ++
Sbjct: 55 GKPQGPPPQGGNQSQGPPPPP------GKPEGRPPQGGNQSQGPPP--HPGKPERPPPQG 106
Query: 127 GSAAAATAVAAGKHLAVPETRGGVPARRRETANPPG-PGRARPGGSPFGHRPLLQPRQIF 185
G+ + T GK P +GG + R PPG P R P G P P +
Sbjct: 107 GNQSQGTPPPPGKPER-PPPQGGNQSHRPPP--PPGKPERPPPQGGNQSQGPPPHPGKPE 163
Query: 186 APLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPR 245
P N+ R + P P G + G + Q P PQ P G + + + P
Sbjct: 164 GPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGG--NPQQPQAPPA 221
Query: 246 QAPQG 250
PQG
Sbjct: 222 GKPQG 226
Score = 39.3 bits (90), Expect = 0.004
Identities = 44/171 (25%), Positives = 61/171 (35%), Gaps = 30/171 (17%)
Query: 55 ERSPLRRGSCARGEKRPPG------PTGGQWRWGVSPRPSAASATGPPQDRAARGCELRE 108
ER P + G+ ++G PPG P GG P P P ++G
Sbjct: 100 ERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHP 159
Query: 109 GRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARP 168
G+ E +G+ + + GK P+ G P PP PG+ +
Sbjct: 160 GKPEGPPPQ--------EGNKSRSARSPPGKPQGPPQQEGNKPQ------GPPPPGKPQ- 204
Query: 169 GGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRP 219
G P G P QP+ AP +PQ P PP G R + Q P
Sbjct: 205 GPPPAGGNPQ-QPQ---APPAG-----KPQGPPPPPQGGRPPRPAQGQQPP 246
Score = 37.7 bits (86), Expect = 0.011
Identities = 50/208 (24%), Positives = 72/208 (34%), Gaps = 36/208 (17%)
Query: 41 SSPRRRTVRTAQPKERSPLRRGSCARGEKRPPG------PTGGQWRWGVSPRPSAASATG 94
+ P+R +P+ P + G+ ++G PPG P GG G P P
Sbjct: 45 NQPQRPPPPPGKPQGPPP-QGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPP 103
Query: 95 PPQDRAARGCELREGRAE-----AGHSSTSQKDTLSK--------GSAAAATAVAAGKHL 141
P ++G G+ E G+ S K G+ + GK
Sbjct: 104 PQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPGKPE 163
Query: 142 AVPETRGGVPARRRETANPPGPGRARP---GGSPFGHRPLLQPRQIFAPLQAITNQVRPQ 198
P G + R +PPG + P G P G P +P+ P A N +PQ
Sbjct: 164 GPPPQEGN---KSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQ---GPPPAGGNPQQPQ 217
Query: 199 -------QRPEPPPAGSAARSGRRAQRP 219
Q P PPP G + Q+P
Sbjct: 218 APPAGKPQGPPPPPQGGRPPRPAQGQQP 245
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 46.2 bits (108), Expect = 3e-05
Identities = 53/182 (29%), Positives = 62/182 (34%), Gaps = 43/182 (23%)
Query: 43 PRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQWRWGVS-------PRPSAASATGP 95
PRR A P R+P + A PP P V+ PR +AA+AT P
Sbjct: 102 PRRGATPPAPP--RAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP 159
Query: 96 PQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRR 155
P S G A LA P PA
Sbjct: 160 P----------------------------SPGPAQPGPRAQRAAPLAAPPP---APAAPP 188
Query: 156 ETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRR 215
A P GP RA P PL P Q AP Q Q P +P+PPP G A R+G
Sbjct: 189 AVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQ---QQQPPPPQPQPPPEGGAVRAGGA 245
Query: 216 AQ 217
A+
Sbjct: 246 AR 247
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 45.8 bits (107), Expect = 4e-05
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 10/148 (6%)
Query: 91 SATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGV 150
+A GP Q ++ ++ G A + Q+ L A A + + P TRG
Sbjct: 3752 AAPGPQQSQSPSSRQIPSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSA 3811
Query: 151 PARRRETANP-PGPGRA---RPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPA 206
PA + P PGP A +P G P + AP Q Q +P P P
Sbjct: 3812 PAASQPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGV 3871
Query: 207 GSAARSGRRAQRPGRKRSPQSAPAESGE 234
+ AR G G +P P GE
Sbjct: 3872 KAGARPG------GTPGAPAGQPGADGE 3893
Score = 39.7 bits (91), Expect = 0.003
Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 30/210 (14%)
Query: 49 RTAQPKERSPLRRGSCARGEKRP---PGPTGGQWRWGVSPRPSAASATGPPQDRAARGCE 105
R A+P R R E RP P + G PS+A + P + +A
Sbjct: 3665 RAAKPHARD------LGRHEARPHSQPSSAPAMPKKGQPGYPSSAEYSQPSRASSAYH-- 3716
Query: 106 LREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGR 165
H+S S+K + S AA A A P+ +G A + + P R
Sbjct: 3717 ---------HASDSKKGSRQAHSGPAALQSKAEPQ-AQPQLQGRQAAPGPQQSQSPS-SR 3765
Query: 166 ARPGGSPFGHRPLLQPRQ----IFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGR 221
P G+ +P Q +Q + P QA+T Q R QQ+ +P GSA + + A +P
Sbjct: 3766 QIPSGAA-SRQPQTQQQQQGLGLQPPQQALT-QARLQQQSQPTTRGSAPAASQPAGKPQP 3823
Query: 222 KRSPQSAPAESGELSIDREEG--GPRQAPQ 249
S + P +G ++ G G +APQ
Sbjct: 3824 GPSTATGPQPAGPPRAEQTNGSKGTAKAPQ 3853
Score = 31.2 bits (69), Expect = 0.99
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 161 PGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPA-GSAARSGRRAQRP 219
PGPG +P +P G L P A A+ P P P P GS +R +
Sbjct: 29 PGPGAGKPPSAPAGGGQL--PAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKEPL 86
Query: 220 GRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGRGRVI 262
G +R+ P ++ + E +A AG +G R +
Sbjct: 87 GNQRAASPTPKQASATTPGHESPRETRAQGPAGQEADGPRRTL 129
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.4 bits (106), Expect = 5e-05
Identities = 63/268 (23%), Positives = 86/268 (32%), Gaps = 37/268 (13%)
Query: 23 GGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCA----------------R 66
GG Q+ P + P + P E S GSCA
Sbjct: 99 GGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSA---GSCAPVPAAAAVAAGPEPAPA 155
Query: 67 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSK 126
G +P GP R G P P GP + A G A+ + S + ++
Sbjct: 156 GPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPA-----GPGAAQTLNGSAALLNS-HH 209
Query: 127 GSAAAATAVAAGKHLAVPETRGGVPARRRET------ANPPGPGRARPGGSPFGHRPLLQ 180
+A A + V G +P + P +T A PP P P +P P
Sbjct: 210 AAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAA 269
Query: 181 PRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRK--RSPQSAPAESGELSID 238
P P A RP P PP + A A + G +P APA G +
Sbjct: 270 PP---PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVS 326
Query: 239 REEG-GPRQAPQGAGHALEGRGRVINGS 265
+ G G A G E RV+ +
Sbjct: 327 GQPGPGAAAAAPAPGVKAESPKRVVQAA 354
Score = 41.2 bits (95), Expect = 0.001
Identities = 44/154 (28%), Positives = 53/154 (34%), Gaps = 23/154 (14%)
Query: 131 AATAVAAGKHLAVPETRGGV---PARRRETA-----NPPGPGRARPGGSPFGHRPLLQPR 182
AA A A G H+ G PA E A PP GRARPGG PR
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPR 111
Query: 183 QIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPA----ESGELSID 238
+ P P + PPP GSA P+ APA +G ++
Sbjct: 112 RPLVP----AGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA 167
Query: 239 REEG-------GPRQAPQGAGHALEGRGRVINGS 265
G GP P A G + +NGS
Sbjct: 168 ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGS 201
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 45.4 bits (106), Expect = 5e-05
Identities = 65/253 (25%), Positives = 84/253 (33%), Gaps = 42/253 (16%)
Query: 6 GPRGSP--PGCKAALWSTLGGSMQQSAP--TGQWGIRADSSPRRRTVRTAQPKERS-PLR 60
GP+G P PGC G S +Q P G G P + P + P
Sbjct: 1085 GPKGEPGSPGCPGHF----GASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGL 1140
Query: 61 RGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQ 120
RG GE PGP G Q G+ P +G P G + ++G
Sbjct: 1141 RGQ--PGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKG----------- 1187
Query: 121 KDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHR-PLL 179
T A+G H P G+P + E +P PG + PG P G + P
Sbjct: 1188 ------------TKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPG--PRGKKGPPG 1233
Query: 180 QPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDR 239
P P A P+ P+P P G G P R P G + + R
Sbjct: 1234 PPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPG-----PDGPRGAPGPPGLPGSVDLLR 1288
Query: 240 EEGGPRQAPQGAG 252
E G P G
Sbjct: 1289 GEPGDCGLPGPPG 1301
Score = 30.0 bits (66), Expect = 2.2
Identities = 31/111 (27%), Positives = 36/111 (32%), Gaps = 7/111 (6%)
Query: 67 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSK 126
G + PG +G G P A GPP R G G E G S
Sbjct: 692 GPQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGG--EKGSSPVGPPGPPGS 749
Query: 127 GSAAAATAV---AAGKHLAVPETRG--GVPARRRETANPPGPGRARPGGSP 172
+ A HL P RG GVP + +P PG P G P
Sbjct: 750 PGVNGQKGIPGDPAFGHLGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIP 800
Score = 29.6 bits (65), Expect = 2.9
Identities = 55/211 (26%), Positives = 66/211 (31%), Gaps = 38/211 (18%)
Query: 67 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRA--EAGHSSTSQKDTL 124
GE+ PG G G P +G P DR RG + G E + SQK T
Sbjct: 918 GERGKPGAEGCP---GAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTP 974
Query: 125 SKGSAAAATAVAAGKHLAVPETRG-----GVPARRRETA--NPPGPGRARPG--GSPFGH 175
+ P RG G+ RR E PPG R PG G P
Sbjct: 975 GEPGPPGDD--------GFPGERGDKGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPP 1026
Query: 176 RPLLQPRQI----FAPLQAITNQVRPQQRPEPP----------PAGSAARSGRRAQRPGR 221
P P F + P PP P G+ PG
Sbjct: 1027 GPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGP 1086
Query: 222 KRSPQSAPAESGELSIDREEGGPR-QAPQGA 251
K P S P G E+G P Q P+G+
Sbjct: 1087 KGEPGS-PGCPGHFGASGEQGLPGIQGPRGS 1116
Score = 28.5 bits (62), Expect = 6.4
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 67 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSK 126
G K PGP G + G+ P A+GPP ++ A+G ++ R + GH D
Sbjct: 524 GTKGDPGPPGAEGPPGL---PGKHGASGPPGNKGAKG-DMVVSRVK-GHKGERGPDG-PP 577
Query: 127 GSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQP 181
G + H G P E A P G G P G P P+ P
Sbjct: 578 GFPGQPGSHGRDGHAGEKGDPG--PPGDHEDATPGGKGFPGPLGPPGKAGPVGPP 630
>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
Length = 904
Score = 45.4 bits (106), Expect = 5e-05
Identities = 67/249 (26%), Positives = 91/249 (36%), Gaps = 53/249 (21%)
Query: 4 GSGPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRG- 62
G R PP A ST S + P A+SS R ++PK +P+ +G
Sbjct: 509 GLPSRMEPP----APLSTSSTSQASALPPAGRRNLAESSGVGRVGAGSRPKPEAPMAKGK 564
Query: 63 --------SCARGEKRPPGPTGGQWRWGVSP--RPSAASATGPPQDRAARGCELREGRAE 112
S + E + GP G WR + P R S A T P++ A L E RA
Sbjct: 565 STTLTQDMSTSLQEGQEDGPAG--WRANLKPVDRRSPAERTLKPKEPRA----LAEPRAG 618
Query: 113 AGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSP 172
S GS A + + P R T P PG + P SP
Sbjct: 619 EAPRKVS-------GSFAGSVHITL------------TPVRPDRTPRPASPGPSLPARSP 659
Query: 173 FGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQR-------PGRKRSP 225
P + + A L N +RP EPP + +S + ++ PGR SP
Sbjct: 660 --SPPRRRRLAVPASLDVCDNWLRP----EPPGQEARVQSWKEEEKKPHLQGKPGRPLSP 713
Query: 226 QSAPAESGE 234
+ PA GE
Sbjct: 714 ANVPALPGE 722
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 44.7 bits (104), Expect = 9e-05
Identities = 62/210 (29%), Positives = 79/210 (37%), Gaps = 21/210 (10%)
Query: 61 RGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRA--ARGCELREGRAEAGHSST 118
RG A KR GQW+ SP P+ A A PQ R GC R E H +
Sbjct: 350 RGFDAAVRKRKSPALSGQWQ-SPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAG 408
Query: 119 S-QKDTLSKGSAAAATAVAAGKHLAVPE--TRGGVPARRRETANPPGPGRARPGGSPFGH 175
L T + + ++P +RG ARR G GR PGG G
Sbjct: 409 GCPMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGG-----GSGRFLPGGGWRGA 463
Query: 176 RPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGEL 235
R L+ AP Q+ + P P GSA R+ A+ +RS PA G
Sbjct: 464 RTKLRVCCTPAPGQSRGSLA-------PRPTGSAGRALAAARLFAPQRSAAQLPARCGCF 516
Query: 236 SIDREEGGPRQAPQGA---GHALEGRGRVI 262
R PR+ GA A RG+V+
Sbjct: 517 GSARGMRAPRRLLVGAEETAGARSKRGKVL 546
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 44.3 bits (103), Expect = 1e-04
Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 24/214 (11%)
Query: 49 RTAQPKERSPLRRGSCARGEKRPPG--PTGGQWRW-GVSPRPSAASATGPPQDRAARGCE 105
R + R+P RRGS R KR P T G+ R G P ++ T Q + +RG
Sbjct: 115 RGTHSRGRTPGRRGS--RSSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKS 172
Query: 106 LREGRAEAGHSSTSQKDTLSKGS--AAAATAVAAGKHLAVP------ETRGGVPARRRET 157
R S SQ LSK S + + LAV +T G+P+ +E
Sbjct: 173 YGRPRTSNRERSDSQPRNLSKKSYRPPGGSGIGRSSELAVTPSTAKCQTPTGIPS--KEK 230
Query: 158 ANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAIT-----NQVRPQQRPEPPPAGSAARS 212
++ P P +R S +G + + ++P + + NQ + RP+ + S +RS
Sbjct: 231 SDNPSPSSSRKVKS-YGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQ---SHSQSRS 286
Query: 213 GRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQ 246
RR++ +KR+ + S + + R R+
Sbjct: 287 PRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRK 320
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 44.3 bits (103), Expect = 1e-04
Identities = 56/200 (28%), Positives = 68/200 (34%), Gaps = 36/200 (18%)
Query: 88 SAASATGPPQDRAARGCELREGRAEAGHSSTS-QKDTLSKGSAAAATAVAAGKHLAVPET 146
SAA A+G Q A G G +AGHS ++DT + T G P
Sbjct: 468 SAAVASGGAQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGT---PGSPSETPGP 524
Query: 147 RGGVPARRRETANP---PGPGRARPGG----------------SPFGHRPLLQPRQIFAP 187
PA +P PGP A P G P G P P + P
Sbjct: 525 SPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGP 584
Query: 188 LQAITNQVRPQQRPE----PPPAGSAARSGRRAQRPGRKRSPQSA------PAESGELSI 237
A + P + P P PAG A A+ P P+ A PAES +
Sbjct: 585 SPAGPTRDEPAESPSETPGPRPAGPA--GDEPAESPSETPGPRPAGPAGDEPAESPSETP 642
Query: 238 DREEGGP-RQAPQGAGHALE 256
GP R P AG A E
Sbjct: 643 GPSPAGPTRDEPAKAGEAAE 662
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 44.3 bits (103), Expect = 1e-04
Identities = 70/275 (25%), Positives = 98/275 (35%), Gaps = 32/275 (11%)
Query: 3 RGSGPRGSPPGCKAALWSTLGGSMQQS--APTGQWGIRADSSPRRRTVRTAQPKERSPLR 60
RG+ G P K GG +S +WG R PRRR + + R
Sbjct: 289 RGAATAGEKPAAKGR-----GGRGPKSLGGQNPRWG-RGGKKPRRRGQKATKAAAAGTKR 342
Query: 61 RGSCARGEKRPPGPTG-----GQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGH 115
G G ++ G Q R G PR ASA G +RG ++G EA
Sbjct: 343 GG----GGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAK----SRGGGDKKGLREAKR 394
Query: 116 SSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGG---VPARRRETANPPGPGRARPGGSP 172
+K + A A K RGG P RR A G++R GG
Sbjct: 395 RGDGRKKPRWQNPRRRAQKAPAAK------PRGGGSKKPRRRGPKAAKSRGGKSRSGGGK 448
Query: 173 FGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRK--RSPQSAPA 230
R + RQ A A + + Q R + AG+ +R G G+ R Q A A
Sbjct: 449 KPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRRGQKAEA 508
Query: 231 ESGELSIDREEGGPRQAPQGAGHALEGRGRVINGS 265
+ + + R+ P+ A+ G + GS
Sbjct: 509 AGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGS 543
Score = 39.7 bits (91), Expect = 0.003
Identities = 74/304 (24%), Positives = 107/304 (35%), Gaps = 63/304 (20%)
Query: 9 GSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTV----------RTAQPKERSP 58
G+ AA + GG Q A R+ PRRR R + K R
Sbjct: 156 GAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKGRQREAKSRFG 215
Query: 59 LRRGSCARGEKRP-PGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSS 117
RG + +RP P G + R G +P G +AA G + R G++ G
Sbjct: 216 KTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRG---QKAATGGKSRVGKSRGGGDK 272
Query: 118 TSQKDTLSKGSA-----AAATA----VAAGKHLAVPET---------RGGVPARRR--ET 157
++ + A AATA A G+ P++ RGG RRR +
Sbjct: 273 KLRRQGQNAALAGAKRRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRGGKKPRRRGQKA 332
Query: 158 ANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRP---EPPPAGSAARSG- 213
G R GG Q + +++ Q R ++P + AG+ +R G
Sbjct: 333 TKAAAAGTKRGGGG--------QQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGG 384
Query: 214 -----RRAQRPG----------RKRSPQSAPAES--GELSIDREEGGPRQAPQGAGHALE 256
R A+R G +R Q APA G S GP+ A G +
Sbjct: 385 DKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRS 444
Query: 257 GRGR 260
G G+
Sbjct: 445 GGGK 448
Score = 30.8 bits (68), Expect = 1.3
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
Query: 52 QPKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAA--------RG 103
QP+ + P GS E G + PR A + G AA RG
Sbjct: 660 QPRWQKPAAAGS----ESSAAAAVGQEAEARKKPRRRRAKSRGDGGQNAAVGINPWQRRG 715
Query: 104 CELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRR 155
+ R G++ G + S+ +K + +GK A ++ GG A+RR
Sbjct: 716 KKPRLGKSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASKSHGGGGAKRR 767
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 43.9 bits (102), Expect = 1e-04
Identities = 55/231 (23%), Positives = 82/231 (35%), Gaps = 35/231 (15%)
Query: 43 PRRRTVRTAQPKERSPLRR---GSCARGEKRPPGPTGGQWRWGVSPRPSAASATG---PP 96
P++ + +PK P R + +RPP P+G + SP P+ G PP
Sbjct: 1134 PQKDPAQPLEPKRPPPPRPVAPPTRPAPPQRPPPPSGAR-----SPAPTRKEFGGIGAPP 1188
Query: 97 QDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRE 156
AR RE A T++KD + + + +A R +P R
Sbjct: 1189 SPGVAR----REMEAPKS-PGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGV 1243
Query: 157 TANPPGPGRARPG---------------GSPFGHRPLLQPRQIFAPLQAITNQVRPQQRP 201
+ P RA G GS F PL +P+ F P ++ + Q P
Sbjct: 1244 ISAPQSHARASAGRLTPESQSKTSETSKGSTFLPEPL-KPQAAFPPQSSLPPPAQRLQEP 1302
Query: 202 EPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQGAG 252
P A +SG +P + PQ P S+ E Q Q +G
Sbjct: 1303 LVPVAAPMPQSG---PQPNLETPPQPPPRSRSSHSLPSEASSQPQQEQPSG 1350
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 43.9 bits (102), Expect = 1e-04
Identities = 68/281 (24%), Positives = 95/281 (33%), Gaps = 39/281 (13%)
Query: 5 SGPRGSP-----PGCKAALWST----LGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKE 55
+GP G+P PG K A + G P+G G P+ + P
Sbjct: 382 AGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGS 441
Query: 56 RSPLRRGSCARGE------KRPPGPTGGQWRWGVSPRPSAASATGPPQDR---AARGCEL 106
+ + A+GE + PPGP G + + G P GPP +R +RG
Sbjct: 442 KGD----TGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPG 497
Query: 107 REGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRG-----GVPARRRETANPP 161
+G A + + G + +P +G G P +T PP
Sbjct: 498 ADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKT-GPP 556
Query: 162 GP----GRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGR--- 214
GP GR P G P G R P A + +R P P G+ +G+
Sbjct: 557 GPAGQDGRPGPPGPP-GARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGE 615
Query: 215 -RAQRPGRKRSPQSAPAESGELSIDREEG--GPRQAPQGAG 252
AQ P P E G +G GP P AG
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAG 656
Score = 42.7 bits (99), Expect = 3e-04
Identities = 72/277 (25%), Positives = 88/277 (31%), Gaps = 54/277 (19%)
Query: 2 DRGS----GPRG--SPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQP-- 53
DRG GP G PPG G G G + D+ P P
Sbjct: 801 DRGEPGPPGPAGFAGPPGAD--------GQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGP 852
Query: 54 --KERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG-R 110
+P +G ARG PPG TG G P + GPP G E +G R
Sbjct: 853 IGNVGAPGAKG--ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPR 910
Query: 111 AEAGHSS-------------TSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRET 157
E G + +K + A A + +A G+P +R E
Sbjct: 911 GETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGER 970
Query: 158 ANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQ 217
P PG P G P P A + P P AG SGR
Sbjct: 971 GFPGLPG---PSGEPGKQ----------GPSGASGERGPPGPMGPPGLAGPPGESGREG- 1016
Query: 218 RPGRKRSP--QSAPAESGELSIDREEGGPRQAPQGAG 252
PG + SP +P G DR E GP P G
Sbjct: 1017 APGAEGSPGRDGSPGAKG----DRGETGPAGPPGAPG 1049
Score = 41.6 bits (96), Expect = 7e-04
Identities = 75/260 (28%), Positives = 93/260 (35%), Gaps = 45/260 (17%)
Query: 24 GSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQWRWGV 83
G M S P G G P+ +P E S G + PPGP G G
Sbjct: 179 GPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPG----ASGPMGPRGPPGPPGKNGDDGE 234
Query: 84 SPRPSAASATGPPQDRAARGCELREG-RAEAGHSSTSQKDTLSKGSAAAA----TAVAAG 138
+ +P GPP + ARG G GH S D +KG A A + G
Sbjct: 235 AGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDG-AKGDAGPAGPKGEPGSPG 293
Query: 139 KHLA--------VPETRG--GVP----ARRRE----TANPPGP-GRARPGGSP-----FG 174
++ A +P RG G P AR + A PPGP G A P G P G
Sbjct: 294 ENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKG 353
Query: 175 HRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQ--RPGRKRSPQSAPAES 232
PR P Q + + P P PAG+A +G +PG K AP +
Sbjct: 354 EAGPQGPRGSEGP-QGVRGEPGP-----PGPAGAAGPAGNPGADGQPGAK-GANGAPGIA 406
Query: 233 GELSIDREEGGPRQAPQGAG 252
G G PQG G
Sbjct: 407 GAPGFPGARG--PSGPQGPG 424
Score = 33.1 bits (74), Expect = 0.26
Identities = 64/267 (23%), Positives = 84/267 (31%), Gaps = 41/267 (15%)
Query: 6 GPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVR----TAQPKERSPLRR 61
GP G P + G + P+G G R P R V+ A P+ +
Sbjct: 647 GPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG--FPGERGVQGPPGPAGPRGANGAPG 704
Query: 62 GSCARGEKRPPGPTGGQWRWGVSPRP---SAASATGPPQDRAARGCELREGR--AEAGHS 116
A+G+ PG G Q G+ P AA GP DR G + +G +
Sbjct: 705 NDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRG 764
Query: 117 STSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGP-GRARPGGSPFGH 175
T A + A P G P R E PPGP G A P G+
Sbjct: 765 LTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGE-PGPPGPAGFAGPPGA---- 819
Query: 176 RPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGEL 235
+P + EP AG+ +G P P P G +
Sbjct: 820 ------------------DGQPGAKGEPGDAGAKGDAG-----PPGPAGPAGPPGPIGNV 856
Query: 236 SIDREEGGPRQA-PQGAGHALEGRGRV 261
+G A P GA GRV
Sbjct: 857 GAPGAKGARGSAGPPGATGFPGAAGRV 883
Score = 30.0 bits (66), Expect = 2.2
Identities = 49/189 (25%), Positives = 66/189 (34%), Gaps = 18/189 (9%)
Query: 66 RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG-RAEAGHSSTSQKDTL 124
+G P GP G + G P A GP R RG G + G + +
Sbjct: 643 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGA 702
Query: 125 SKGSAAAATAVAAGKHLAVPETRG-----GVPARRRETANPPGP----GRARPGGSPFGH 175
A A A G P ++G G+P R A PGP G A P G+ G
Sbjct: 703 PGNDGAKGDAGAPG----APGSQGAPGLQGMPG-ERGAAGLPGPKGDRGDAGPKGAD-GS 756
Query: 176 RPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGEL 235
R + P+ P + E P+G A +G R PG + P P +G
Sbjct: 757 PGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARG-APGDRGEP-GPPGPAGFA 814
Query: 236 SIDREEGGP 244
+G P
Sbjct: 815 GPPGADGQP 823
Score = 29.6 bits (65), Expect = 2.9
Identities = 21/73 (28%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 31 PTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAA 90
P G G PR T + +R ++ G + PPGP G G S A
Sbjct: 1080 PVGARGPAGPQGPRGDKGETGEQGDRG-IKGHRGFSGLQGPPGPPGSPGEQGPSGASGPA 1138
Query: 91 SATGPPQDRAARG 103
GPP A G
Sbjct: 1139 GPRGPPGSAGAPG 1151
Score = 29.3 bits (64), Expect = 3.8
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Query: 24 GSMQQSAPTGQWGIRADSSPRRRTVRTAQP-KERSPLRRGSC-ARGEKRPPGPTGGQWRW 81
G+ + P G G + P + R P E SP R GS A+G++ GP G
Sbjct: 989 GASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048
Query: 82 GVSPRPSAASATGPPQDRAARG 103
G P G DR G
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETG 1070
Score = 29.3 bits (64), Expect = 3.8
Identities = 64/252 (25%), Positives = 78/252 (30%), Gaps = 35/252 (13%)
Query: 5 SGPRGSP-PGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGS 63
SG RG P P L G S ++ AP + D SP + R P
Sbjct: 991 SGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPP----- 1045
Query: 64 CARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG-RAEAGHSSTSQKD 122
A G PGP G + G A GP ARG +G R + G + Q D
Sbjct: 1046 GAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETG-EQGD 1104
Query: 123 TLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPG-PGRARPGGSPFGHRPLLQP 181
KG H +G PPG PG P G+ P P
Sbjct: 1105 RGIKG------------HRGFSGLQG--------PPGPPGSPGEQGPSGASGPAGPRGPP 1144
Query: 182 RQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREE 241
AP + N + P P P G +G P P P G S +
Sbjct: 1145 GSAGAPGKDGLNGL-PGPIGPPGPRGRTGDAG-----PVGPPGPPGPPGPPGPPSAGFDF 1198
Query: 242 GGPRQAPQGAGH 253
Q PQ H
Sbjct: 1199 SFLPQPPQEKAH 1210
Score = 28.9 bits (63), Expect = 4.9
Identities = 49/207 (23%), Positives = 62/207 (29%), Gaps = 32/207 (15%)
Query: 67 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSK 126
GE GP+G G GPP + G EG S ++ D
Sbjct: 980 GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGET 1039
Query: 127 GSAAAATAVAAGKHLAVPETRGGVPARRRET-----ANPPGPGRARPGGSPFGHR----- 176
G A A A P G R ET A P GP AR P G R
Sbjct: 1040 GPAGPPGAPGA-PGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGE 1098
Query: 177 ------PLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPA 230
++ + F+ LQ P PP + A P R P +
Sbjct: 1099 TGEQGDRGIKGHRGFSGLQG----------PPGPPGSPGEQGPSGASGPAGPRGPPGSAG 1148
Query: 231 ESGELSIDREEG-----GPRQAPQGAG 252
G+ ++ G GPR AG
Sbjct: 1149 APGKDGLNGLPGPIGPPGPRGRTGDAG 1175
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 43.9 bits (102), Expect = 1e-04
Identities = 61/231 (26%), Positives = 79/231 (34%), Gaps = 22/231 (9%)
Query: 43 PRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAAR 102
P+ T T P + P +G+ PPG G G+ +P + + GPP
Sbjct: 89 PQPPTAPTRPPNGQGP----QGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPP--GICE 142
Query: 103 GCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETA--NP 160
C + S K ++ G A A P G P P
Sbjct: 143 SCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGP 202
Query: 161 PG-PGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQR--PEPP----PAGSAARSG 213
PG PG+A P G P G + P RP +R P PP PAG G
Sbjct: 203 PGEPGQAGPSGPP-GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPG 261
Query: 214 RRAQR--PGR--KRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGRGR 260
+ R GR ++ AP GE + E G P P G A RGR
Sbjct: 262 MKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAP--GPMGPRGAPGERGR 310
Score = 40.8 bits (94), Expect = 0.001
Identities = 71/254 (27%), Positives = 84/254 (33%), Gaps = 57/254 (22%)
Query: 9 GSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSP--LRRGSCAR 66
G PPG G + P G G A +P + A P ER P L R
Sbjct: 647 GGPPG--------ENGKPGEPGPKGDAG--APGAPGGKGDAGA-PGERGPPGLAGAPGLR 695
Query: 67 GEKRPPGPTGGQWRWGVSPRPSAASA---TGPPQDRAARGCELREGRAEAGHSSTSQKDT 123
G PPGP GG+ G P AA G P +R G +G + G D
Sbjct: 696 GGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKG--DKGEPGGPGADG 753
Query: 124 LSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQ 183
+ G P G P + E P PG A P GSP G R P
Sbjct: 754 VPGKDGPRGPTGPIG-----PPGPAGQPGDKGEGGAPGLPGIAGPRGSP-GERGETGP-- 805
Query: 184 IFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGG 243
P PAG G+ + PG K + AP E G EGG
Sbjct: 806 -------------------PGPAGFPGAPGQNGE-PGGK-GERGAPGEKG-------EGG 837
Query: 244 P---RQAPQGAGHA 254
P P G+G A
Sbjct: 838 PPGVAGPPGGSGPA 851
Score = 37.4 bits (85), Expect = 0.014
Identities = 70/282 (24%), Positives = 92/282 (32%), Gaps = 36/282 (12%)
Query: 5 SGPRGSP-----PGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPL 59
SGPRG P PG K G+ ++ G G P + T P
Sbjct: 569 SGPRGQPGVMGFPGPKGN-----DGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPT 623
Query: 60 RRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCE-LREGRAEAGHSST 118
G +G+ PPGP G Q G P G P + G G+ +AG
Sbjct: 624 GPGG-DKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGE 682
Query: 119 SQKDTLSKG----SAAAATAVAAGKHLAVPE-------TRG--GVPARRRETANP-PGPG 164
L+ A GK A P T G G+P R +P P
Sbjct: 683 RGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGD 742
Query: 165 RARPGGSPFGHRPLLQ-PRQIFAPLQAITNQVRPQQRPE------PPPAGSAARSGRRAQ 217
+ PGG P PR P+ +P + E P AG G R +
Sbjct: 743 KGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGE 802
Query: 218 R--PGRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEG 257
PG P AP ++GE E G P + +G + G
Sbjct: 803 TGPPGPAGFP-GAPGQNGEPGGKGERGAPGEKGEGGPPGVAG 843
Score = 35.0 bits (79), Expect = 0.068
Identities = 70/269 (26%), Positives = 82/269 (30%), Gaps = 56/269 (20%)
Query: 6 GPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCA 65
G +G P G A G + P G G + P P RGS
Sbjct: 741 GDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGP--RGSPG 798
Query: 66 -RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTL 124
RGE PPGP G P A G P + RG +G
Sbjct: 799 ERGETGPPGPAG---------FPGAPGQNGEPGGKGERGAPGEKG--------------- 834
Query: 125 SKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQI 184
+G G A P GV + E +P GPG A G P G R L P
Sbjct: 835 -EGGPPGVAGPPGGSGPAGPPGPQGV---KGERGSPGGPGAA---GFP-GARGLPGPPGS 886
Query: 185 FAPLQAITNQVRPQQRPEPPPAGSAARSGR--------RAQRPGRKRSP--QSAPAESGE 234
P + P PAG+ G A +PG K SP Q P G
Sbjct: 887 NGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGP 946
Query: 235 LSIDREEG-----------GPRQAPQGAG 252
L I G GPR +P G
Sbjct: 947 LGIAGITGARGLAGPPGMPGPRGSPGPQG 975
Score = 33.5 bits (75), Expect = 0.20
Identities = 52/191 (27%), Positives = 64/191 (33%), Gaps = 24/191 (12%)
Query: 67 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSK 126
GE PGP G + G RP A G + ARG + + G ++ +K
Sbjct: 291 GENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAK 350
Query: 127 GSAAAATAVAAGKHLAVPETRGGV-PARRRETANPPGPGRARPG--GSPFGHRPLLQPRQ 183
G A + + P RG P PPGP PG GSP G +
Sbjct: 351 GEVGPAGSPGSN---GAPGQRGEPGPQGHAGAQGPPGP----PGINGSPGGKGEM----- 398
Query: 184 IFAPLQAITNQVRPQQRPEPPPAGSAARSGRR--AQRPGRKRSPQSAPAESGELSIDREE 241
P R P PAG+ G R A PG K + P GE R E
Sbjct: 399 --GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPG-KNGAKGEPGPRGE----RGE 451
Query: 242 GGPRQAPQGAG 252
G P G
Sbjct: 452 AGIPGVPGAKG 462
Score = 33.5 bits (75), Expect = 0.20
Identities = 59/254 (23%), Positives = 76/254 (29%), Gaps = 43/254 (16%)
Query: 5 SGPRGSP-PGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGS 63
SG RG P P L T G + P D SP + R +P
Sbjct: 989 SGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAP----- 1043
Query: 64 CARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG-RAEAGHSSTSQKD 122
A G PPGP G + G A G P +RG +G R + G +
Sbjct: 1044 GAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKG-------E 1096
Query: 123 TLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGG--SPFGHRPLLQ 180
T +G+A G+ R NP PG P G G
Sbjct: 1097 TGERGAA-------------------GIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPAG 1137
Query: 181 PRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDRE 240
PR P+ + P P G G R + R + +P G+
Sbjct: 1138 PR---GPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGE-----RGSEGSPGHPGQPGPPGP 1189
Query: 241 EGGPRQAPQGAGHA 254
G P G G A
Sbjct: 1190 PGAPGPCCGGVGAA 1203
Score = 31.2 bits (69), Expect = 0.99
Identities = 49/195 (25%), Positives = 61/195 (31%), Gaps = 14/195 (7%)
Query: 67 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG-------RAEAGHSSTS 119
G PPGP+G + + GV P G P RG G E G
Sbjct: 561 GRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETG--PQG 618
Query: 120 QKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLL 179
G T + L GG P + P G A G+P G
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAG 678
Query: 180 QPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSP--QSAPAESGELSI 237
P + P A +R P P P G +G PG +P Q P E G L
Sbjct: 679 APGERGPPGLAGAPGLRGGAGP-PGPEGGKGAAGPPGP-PGAAGTPGLQGMPGERGGLGS 736
Query: 238 DREEGGPRQAPQGAG 252
+ G + P G G
Sbjct: 737 PGPK-GDKGEPGGPG 750
Score = 29.3 bits (64), Expect = 3.8
Identities = 50/204 (24%), Positives = 61/204 (29%), Gaps = 25/204 (12%)
Query: 65 ARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGR-AEAGHS------- 116
ARG PGP G G P A GP + G + G GH+
Sbjct: 325 ARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPG 384
Query: 117 ------STSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGG 170
S K + A + + P G P R A PG A+
Sbjct: 385 PPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPG-LRGGAGEPGKNGAKGEP 443
Query: 171 SPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRK--RSPQSA 228
P G R I A + EP G +G R PG + P
Sbjct: 444 GPRGER---GEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERG-APGFRGPAGPNGI 499
Query: 229 PAESGELSIDREEGGPRQA-PQGA 251
P E G E G P A P+GA
Sbjct: 500 PGEKGPAG---ERGAPGPAGPRGA 520
Score = 29.3 bits (64), Expect = 3.8
Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 9/113 (7%)
Query: 2 DRG----SGPRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERS 57
DRG +GP G+P + G TG+ G R P
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 1122
Query: 58 PL-RRGSCAR----GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCE 105
P ++G+ G + P GP+G + G S P GP +R RG E
Sbjct: 1123 PAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSE 1175
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 43.9 bits (102), Expect = 1e-04
Identities = 50/215 (23%), Positives = 76/215 (35%), Gaps = 47/215 (21%)
Query: 27 QQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCARGEKRPPGPTGGQWRWGVSPR 86
QQ A + A +P R RT + K + P RR + G++R G + + G R
Sbjct: 238 QQRAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRRGSGYSPSADQQGAQDR 297
Query: 87 PSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPET 146
A+A P +GH + +K + A T G +
Sbjct: 298 EEEAAAAPAP--------------TSSGHRTEKRKRLQLQCQPAGGTGQRRGSGCSSSAN 343
Query: 147 RGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPA 206
+ G R E A P P + GHR T + +PQQ P A
Sbjct: 344 QQGAQDREEEAAAAPVPTSS-------GHR---------------TEKRKPQQPQRRPAA 381
Query: 207 GSAARSGRRAQRPGRKRSPQSAPAESGELSIDREE 241
G+ G++R S+P+ + + DREE
Sbjct: 382 GT-----------GQRRGSGSSPSADQQRAQDREE 405
Score = 42.0 bits (97), Expect = 6e-04
Identities = 56/229 (24%), Positives = 82/229 (35%), Gaps = 47/229 (20%)
Query: 39 ADSSPRRRTVRTAQPKERSPLRRGSCARGEKR--------PPGPTGGQWRWGVSPRPSAA 90
A ++ ++R + +P+ S R EKR P G TG R G PSA
Sbjct: 74 APAADQQRAQDREEEAAAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQ--RRGSRSSPSAD 131
Query: 91 SATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGV 150
++ A + R GH + +K + A T G + + G
Sbjct: 132 QQRAQDREEEAAAAPVPTSR---GHRTEKRKRQQPQRRPAGGTGQRRGSGSSPSADQQGA 188
Query: 151 PARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAA 210
R E A P P + GHR T + +PQQ P+ PAG
Sbjct: 189 QDREEEAAAAPAP-------TSRGHR---------------TEKRKPQQ-PQCRPAGGT- 224
Query: 211 RSGRRAQRPGRKRSPQSAPAESGELSIDR-EEGGPRQAPQGAGHALEGR 258
G++R +S+P+ + + DR EE AP GH E R
Sbjct: 225 ---------GQRRGSRSSPSADQQRAQDREEEAAAAPAPTSRGHRTEKR 264
Score = 37.0 bits (84), Expect = 0.018
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 192 TNQVRPQQRPEPPPAGSAARSGRRAQRPG--------RKRSPQSAPAESGELSIDR-EEG 242
T +RPQQ+P+ PAG + P R+ +APA + + DR EE
Sbjct: 30 TKPLRPQQQPQCQPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAADQQRAQDREEEA 89
Query: 243 GPRQAPQGAGHALEGRGRV 261
P +GH E R R+
Sbjct: 90 AAAPVPTSSGHRTEKRKRL 108
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 43.9 bits (102), Expect = 1e-04
Identities = 50/159 (31%), Positives = 57/159 (35%), Gaps = 30/159 (18%)
Query: 82 GVSPRPSAASATGPPQDRAA-RGCELREGRAEA---------GHSSTSQKDTLSKG---- 127
G++ P A +A GP RAA RG +A G SQ+ +G
Sbjct: 91 GIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTV 150
Query: 128 --SAAAATAVAAGKHLAVPETRGGVPARRRETANPPG-----PGRARPGGSPFGHRPLLQ 180
+AAAATA AG P RGG P A PPG PG P G P G P
Sbjct: 151 AAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRG 210
Query: 181 PRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRP 219
P P RP PP G R RP
Sbjct: 211 TPMGMPP---------PGMRPPPPGMRGPPPPGMRPPRP 240
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 43.9 bits (102), Expect = 1e-04
Identities = 63/262 (24%), Positives = 94/262 (35%), Gaps = 33/262 (12%)
Query: 7 PRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRR------TVRTAQPKERSPLR 60
P P KA+ ST +++AP G D +P+ + R +P+E S
Sbjct: 216 PSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVKGGALPPAKRAKKPEEESESS 273
Query: 61 RGSCARGEKRPPGPTGG--------QWRWGVSPR---PSAASATGPPQDRAARGCELREG 109
E+ P G Q R +P P + PP A + + G
Sbjct: 274 EEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVASQTKAG 333
Query: 110 RAEAGHSSTSQKDTLSKGSAAAATAV----AAGKHLAVPETRGGVPARRRETANPPGPGR 165
+ E S+S++ + S+ AA A+ A+GK V R+ A P PG+
Sbjct: 334 KPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAPPGK 393
Query: 166 ARPGGSPFGHRPLLQPRQIF---------APLQAITNQVRPQQRPEPPPAGSAARSGRRA 216
P + + Q AP QA + PQ R PA + R G A
Sbjct: 394 TGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKG-AA 452
Query: 217 QRPGRKRSPQSAPAESGELSID 238
P RK P +A + G+ D
Sbjct: 453 PAPPRKTGPAAAQVQVGKQEED 474
Score = 34.3 bits (77), Expect = 0.12
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 17/185 (9%)
Query: 7 PRGSPPGCKAALWSTLG-GSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCA 65
P G P K A ST+G G + + A G ++P + + + E S +
Sbjct: 499 PLGKSPQVKPA--STMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSS 556
Query: 66 RGEKRPPGPTGGQWRWG--VSPRPSAASATGPPQDRAARGCELR-EGRAEAGHSSTSQKD 122
GE + G + +P+++ A GPPQ +++ E + SS D
Sbjct: 557 DGEVPTAVAPAQEKSLGNILQAKPTSSPAKGPPQKAGPVAVQVKAEKPMDNSESSEESSD 616
Query: 123 TL-SKGSAAAATAVAAGKHLAVPETRGGVPARRRETAN---------PPGPGRARPGGSP 172
+ S+ + AA TA A L +P+T+ P + TA+ P +A SP
Sbjct: 617 SADSEEAPAAMTAAQAKPALKIPQTK-ACPKKTNTTASAKVAPVRVGTQAPRKAGTATSP 675
Query: 173 FGHRP 177
G P
Sbjct: 676 AGSSP 680
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 43.9 bits (102), Expect = 1e-04
Identities = 63/262 (24%), Positives = 94/262 (35%), Gaps = 33/262 (12%)
Query: 7 PRGSPPGCKAALWSTLGGSMQQSAPTGQWGIRADSSPRRR------TVRTAQPKERSPLR 60
P P KA+ ST +++AP G D +P+ + R +P+E S
Sbjct: 216 PSVKPAQVKASSVSTKESPARKAAPAP--GKVGDVTPQVKGGALPPAKRAKKPEEESESS 273
Query: 61 RGSCARGEKRPPGPTGG--------QWRWGVSPR---PSAASATGPPQDRAARGCELREG 109
E+ P G Q R +P P + PP A + + G
Sbjct: 274 EEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPGKGATPAPPGKAGAVASQTKAG 333
Query: 110 RAEAGHSSTSQKDTLSKGSAAAATAV----AAGKHLAVPETRGGVPARRRETANPPGPGR 165
+ E S+S++ + S+ AA A+ A+GK V R+ A P PG+
Sbjct: 334 KPEEDSESSSEESSDSEEETPAAKALLQAKASGKTSQVGAASAPAKESPRKGAAPAPPGK 393
Query: 166 ARPGGSPFGHRPLLQPRQIF---------APLQAITNQVRPQQRPEPPPAGSAARSGRRA 216
P + + Q AP QA + PQ R PA + R G A
Sbjct: 394 TGPAVAKAQAGKREEDSQSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESPRKG-AA 452
Query: 217 QRPGRKRSPQSAPAESGELSID 238
P RK P +A + G+ D
Sbjct: 453 PAPPRKTGPAAAQVQVGKQEED 474
Score = 34.3 bits (77), Expect = 0.12
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 17/185 (9%)
Query: 7 PRGSPPGCKAALWSTLG-GSMQQSAPTGQWGIRADSSPRRRTVRTAQPKERSPLRRGSCA 65
P G P K A ST+G G + + A G ++P + + + E S +
Sbjct: 499 PLGKSPQVKPA--STMGMGPLGKGAGPVPPGKVGPATPSAQVGKWEEDSESSSEESSDSS 556
Query: 66 RGEKRPPGPTGGQWRWG--VSPRPSAASATGPPQDRAARGCELR-EGRAEAGHSSTSQKD 122
GE + G + +P+++ A GPPQ +++ E + SS D
Sbjct: 557 DGEVPTAVAPAQEKSLGNILQAKPTSSPAKGPPQKAGPVAVQVKAEKPMDNSESSEESSD 616
Query: 123 TL-SKGSAAAATAVAAGKHLAVPETRGGVPARRRETAN---------PPGPGRARPGGSP 172
+ S+ + AA TA A L +P+T+ P + TA+ P +A SP
Sbjct: 617 SADSEEAPAAMTAAQAKPALKIPQTK-ACPKKTNTTASAKVAPVRVGTQAPRKAGTATSP 675
Query: 173 FGHRP 177
G P
Sbjct: 676 AGSSP 680
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,307,151
Number of Sequences: 37866
Number of extensions: 1016118
Number of successful extensions: 8462
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 1022
Number of HSP's that attempted gapping in prelim test: 5924
Number of HSP's gapped (non-prelim): 2868
length of query: 267
length of database: 18,247,518
effective HSP length: 100
effective length of query: 167
effective length of database: 14,460,918
effective search space: 2414973306
effective search space used: 2414973306
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.