TCOF1 12215

Name: TCOF1	Sequence: fasta or formatted (1451aa)		NCBI GI: 207113162
Description: Treacher Collins-Franceschetti syndrome 1 isoform e		Referenced in: Nucleus and Nucleolus
Other entries for this name: alt prot [1488aa] Treacher Collins-Franceschetti syndrome 1 isoform d alt prot [1412aa] Treacher Collins-Franceschetti syndrome 1 isoform f alt prot [1411aa] Treacher Collins-Franceschetti syndrome 1 isoform b alt prot [1450aa] Treacher Collins-Franceschetti syndrome 1 isoform a alt prot [958aa] Treacher Collins-Franceschetti syndrome 1 isoform c
Composition: Amino acid Percentage Count Longest homopolymer A alanine 14.7 213 3 C cysteine 0.3 4 1 D aspartate 3.9 57 2 E glutamate 9.6 139 5 F phenylalanine 0.2 3 1 G glycine 7.8 113 2 H histidine 0.5 7 2 I isoleucine 1.0 15 1 K lysine 11.3 164 8 L leucine 4.0 58 2 M methionine 1.0 14 1 N asparagine 1.3 19 1 P proline 9.1 132 2 Q glutamine 5.4 78 2 R arginine 3.4 49 2 S serine 13.6 198 4 T threonine 6.7 97 2 V valine 5.7 83 2 W tryptophan 0.3 4 1 Y tyrosine 0.3 4 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.997 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.991 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.855 Treacher Collins-Franceschetti syndrome 1 isoform f... TCOF1 0.852 Treacher Collins-Franceschetti syndrome 1 isoform b ... TCOF1 0.652 Treacher Collins-Franceschetti syndrome 1 isoform c ... NACA 0.050 nascent polypeptide-associated complex alpha subuni... NOLC1 0.045 nucleolar and coiled-body phosphoprotein 1 SRRM2 0.036 splicing coactivator subunit SRm300 PCLO 0.035 piccolo isoform 2 PCLO 0.035 piccolo isoform 1 MUC17 0.034 mucin 17 PRG4 0.033 proteoglycan 4 isoform B PRG4 0.033 proteoglycan 4 isoform A NEFH 0.033 neurofilament, heavy polypeptide 200kDa PRG4 0.032 proteoglycan 4 isoform D PRG4 0.032 proteoglycan 4 isoform C FLJ22184 0.029 PREDICTED: hypothetical protein FLJ22184 GPRIN1 0.029 G protein-regulated inducer of neurite outgrowth 1 ... MUC12 0.028 PREDICTED: mucin 12 MUC12 0.027 PREDICTED: mucin 12 RP1L1 0.027 retinitis pigmentosa 1-like 1 SCAF1 0.026 SR-related CTD-associated factor 1 TAF4 0.026 TBP-associated factor 4 DSPP 0.025 dentin sialophosphoprotein preproprotein SPEN 0.024 spen homolog, transcriptional regulator LOC729792 0.024 PREDICTED: hypothetical protein LOC100294238 0.024 PREDICTED: hypothetical protein LOC100294204 0.024 PREDICTED: hypothetical protein LOC100294136 0.024 PREDICTED: hypothetical protein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.