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Search of human proteins with 239741958
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239741958 PREDICTED: hypothetical protein XP_002342362 [Homo
sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753489 PREDICTED: hypothetical protein [Homo sapiens] 220 2e-58
gi|239748065 PREDICTED: hypothetical protein XP_002346524 [Homo ... 220 2e-58
gi|239741958 PREDICTED: hypothetical protein XP_002342362 [Homo ... 220 2e-58
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 35 0.010
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.017
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 34 0.028
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 33 0.037
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 33 0.037
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 33 0.037
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 33 0.037
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 33 0.037
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 33 0.037
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 33 0.037
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 33 0.037
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 33 0.037
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 33 0.037
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 33 0.037
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 33 0.037
gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens] 33 0.037
gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens] 33 0.037
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 31 0.24
gi|26051246 tumor necrosis factor ligand superfamily, member 13 ... 30 0.31
gi|4507599 tumor necrosis factor ligand superfamily, member 13 i... 30 0.31
gi|26051248 tumor necrosis factor ligand superfamily, member 13 ... 30 0.31
gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens] 30 0.31
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 30 0.53
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 30 0.53
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 30 0.53
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 30 0.53
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 30 0.53
>gi|239753489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 220 bits (560), Expect = 2e-58
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MEVAIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVE 60
MEVAIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVE
Sbjct: 1 MEVAIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVE 60
Query: 61 QPVEAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHPIL 104
QPVEAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHPIL
Sbjct: 61 QPVEAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHPIL 104
>gi|239748065 PREDICTED: hypothetical protein XP_002346524 [Homo
sapiens]
Length = 104
Score = 220 bits (560), Expect = 2e-58
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MEVAIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVE 60
MEVAIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVE
Sbjct: 1 MEVAIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVE 60
Query: 61 QPVEAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHPIL 104
QPVEAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHPIL
Sbjct: 61 QPVEAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHPIL 104
>gi|239741958 PREDICTED: hypothetical protein XP_002342362 [Homo
sapiens]
Length = 104
Score = 220 bits (560), Expect = 2e-58
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MEVAIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVE 60
MEVAIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVE
Sbjct: 1 MEVAIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVE 60
Query: 61 QPVEAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHPIL 104
QPVEAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHPIL
Sbjct: 61 QPVEAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHPIL 104
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 35.4 bits (80), Expect = 0.010
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 20/84 (23%)
Query: 22 PPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVG- 80
PPG RGA+ +GP+ DG E+G G++ GP GRP Q V
Sbjct: 1055 PPGMRGAKGRRGPRG--------PDGPAGEQGSRGLK----GPPGPQGRPGRPGQQGVAG 1102
Query: 81 --QHAAERGAEGVVRAVRPGPGHP 102
H RG G+ PGP P
Sbjct: 1103 ERGHLGSRGFPGI-----PGPSGP 1121
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 34.7 bits (78), Expect = 0.017
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 22 PPGTRGARLLQGPQ-------EVWQLGGQCEDGHGAEKG--GYGVRVEQPVEAGPHVAAG 72
PPG G L+GP+ ++G G EKG G P GP G
Sbjct: 809 PPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLG 868
Query: 73 RPALQEVGQHAAERGAEGVVRAV-RPGP 99
P + + ERG GV AV PGP
Sbjct: 869 APGILGLPGSRGERGLPGVAGAVGEPGP 896
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 33.9 bits (76), Expect = 0.028
Identities = 24/57 (42%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 22 PPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQ--PVEAGPHVAAGRPAL 76
P GT GA LQGPQ G Q G EKG G + Q P G + GRP L
Sbjct: 1574 PTGTLGAEGLQGPQ-----GSQGNPGRKGEKGSQGQKGPQGSPGLMGAKGSTGRPGL 1625
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 532 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 587
Query: 83 AAERGAEG 90
E G +G
Sbjct: 588 KGEAGLDG 595
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 470 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 525
Query: 83 AAERGAEG 90
E G +G
Sbjct: 526 KGEAGLDG 533
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 472 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 527
Query: 83 AAERGAEG 90
E G +G
Sbjct: 528 KGEAGLDG 535
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 475 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 530
Query: 83 AAERGAEG 90
E G +G
Sbjct: 531 KGEAGLDG 538
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 479 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 534
Query: 83 AAERGAEG 90
E G +G
Sbjct: 535 KGEAGLDG 542
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 513 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 568
Query: 83 AAERGAEG 90
E G +G
Sbjct: 569 KGEAGLDG 576
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 491 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 546
Query: 83 AAERGAEG 90
E G +G
Sbjct: 547 KGEAGLDG 554
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 503 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 558
Query: 83 AAERGAEG 90
E G +G
Sbjct: 559 KGEAGLDG 566
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 510 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 565
Query: 83 AAERGAEG 90
E G +G
Sbjct: 566 KGEAGLDG 573
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 513 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 568
Query: 83 AAERGAEG 90
E G +G
Sbjct: 569 KGEAGLDG 576
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 515 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 570
Query: 83 AAERGAEG 90
E G +G
Sbjct: 571 KGEAGLDG 578
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 520 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 575
Query: 83 AAERGAEG 90
E G +G
Sbjct: 576 KGEAGLDG 583
>gi|22027565 alpha 1 type XIII collagen isoform 1 [Homo sapiens]
Length = 717
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 532 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 587
Query: 83 AAERGAEG 90
E G +G
Sbjct: 588 KGEAGLDG 595
>gi|22027587 alpha 1 type XIII collagen isoform 8 [Homo sapiens]
Length = 705
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PG+ G + +G E Q G E G EKG G V P GP G P LQ V
Sbjct: 532 PGSPGEKGEKG--ETGQAGSPGEKGEAGEKGNPGAEV--PGLPGPEGPPGPPGLQGVPGP 587
Query: 83 AAERGAEG 90
E G +G
Sbjct: 588 KGEAGLDG 595
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 30.8 bits (68), Expect = 0.24
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 4 AIQGWLKGPGHLLRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPV 63
A Q +GP R L P G + +G +E+ L G GV+ E+
Sbjct: 367 AAQPGKQGPPGTGRCLQAPGTEPGEQTPEGARELSPLQESSSPG--------GVKAEEEQ 418
Query: 64 EAGPHVAAGRPALQEVGQHAAERGAEGVVRAVRPGPGHP 102
AG RP+L + E GA G+ + PG G+P
Sbjct: 419 RAGAEPGT-RPSLARSDDNDHEVGALGLQQGKSPGAGNP 456
>gi|26051246 tumor necrosis factor ligand superfamily, member 13
isoform beta proprotein [Homo sapiens]
Length = 234
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 129 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 185
Query: 100 GHP 102
HP
Sbjct: 186 SHP 188
>gi|4507599 tumor necrosis factor ligand superfamily, member 13
isoform alpha proprotein [Homo sapiens]
Length = 250
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 145 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 201
Query: 100 GHP 102
HP
Sbjct: 202 SHP 204
>gi|26051248 tumor necrosis factor ligand superfamily, member 13
isoform gamma proprotein [Homo sapiens]
Length = 247
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 145 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 201
Query: 100 GHP 102
HP
Sbjct: 202 SHP 204
>gi|26051250 TNFSF12-TNFSF13 protein [Homo sapiens]
Length = 330
Score = 30.4 bits (67), Expect = 0.31
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Query: 47 GHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEV----GQHAAERG---AEGVVRAVRPGP 99
G G + GYGVR++ +AG ++ + Q+V GQ + G E + R +R P
Sbjct: 225 GRGLQAQGYGVRIQ---DAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMP 281
Query: 100 GHP 102
HP
Sbjct: 282 SHP 284
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 29.6 bits (65), Expect = 0.53
Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 2 EVAIQGWLKGPGHL-LRSLLEPPGTRGARLLQGPQ-------EVWQLGGQCEDGHGAEKG 53
E ++G+ PG R + PG +G + L GP ++ G E G G
Sbjct: 956 EPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 54 GYGVRVEQPVEAGPHVA------AGRPALQEVGQHAAERGAEGVVRAVRPGPGHP 102
G + P G AGRP L + ++G G RPGP P
Sbjct: 1016 SMG-NMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
Score = 29.3 bits (64), Expect = 0.69
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PGT G + L GP+ L G E G G G P GP AG P G+
Sbjct: 571 PGTPGVKGLPGPKGELALSG--EKGDQGPPGDPG----SPGSPGPAGPAGPPGYGPQGEP 624
Query: 83 AAERGAEGVVRAVRPGP 99
+ G +GV A PGP
Sbjct: 625 GLQ-GTQGVPGA--PGP 638
Score = 25.8 bits (55), Expect = 7.7
Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 22 PPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQ 81
PPG RGAR QGP + G +G G P G GRP +G
Sbjct: 361 PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPG----WPGLKGSKGERGRPGKDAMGT 416
Query: 82 HAAERGAEGVVRAVRPGPGHP 102
+ A PGP P
Sbjct: 417 PGSPGCAGSPGLPGSPGPPGP 437
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 29.6 bits (65), Expect = 0.53
Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 2 EVAIQGWLKGPGHL-LRSLLEPPGTRGARLLQGPQ-------EVWQLGGQCEDGHGAEKG 53
E ++G+ PG R + PG +G + L GP ++ G E G G
Sbjct: 956 EPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 54 GYGVRVEQPVEAGPHVA------AGRPALQEVGQHAAERGAEGVVRAVRPGPGHP 102
G + P G AGRP L + ++G G RPGP P
Sbjct: 1016 SMG-NMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
Score = 29.3 bits (64), Expect = 0.69
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PGT G + L GP+ L G E G G G P GP AG P G+
Sbjct: 571 PGTPGVKGLPGPKGELALSG--EKGDQGPPGDPG----SPGSPGPAGPAGPPGYGPQGEP 624
Query: 83 AAERGAEGVVRAVRPGP 99
+ G +GV A PGP
Sbjct: 625 GLQ-GTQGVPGA--PGP 638
Score = 25.8 bits (55), Expect = 7.7
Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 22 PPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQ 81
PPG RGAR QGP + G +G G P G GRP +G
Sbjct: 361 PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPG----WPGLKGSKGERGRPGKDAMGT 416
Query: 82 HAAERGAEGVVRAVRPGPGHP 102
+ A PGP P
Sbjct: 417 PGSPGCAGSPGLPGSPGPPGP 437
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 29.6 bits (65), Expect = 0.53
Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 2 EVAIQGWLKGPGHL-LRSLLEPPGTRGARLLQGPQ-------EVWQLGGQCEDGHGAEKG 53
E ++G+ PG R + PG +G + L GP ++ G E G G
Sbjct: 956 EPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 54 GYGVRVEQPVEAGPHVA------AGRPALQEVGQHAAERGAEGVVRAVRPGPGHP 102
G + P G AGRP L + ++G G RPGP P
Sbjct: 1016 SMG-NMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
Score = 29.3 bits (64), Expect = 0.69
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PGT G + L GP+ L G E G G G P GP AG P G+
Sbjct: 571 PGTPGVKGLPGPKGELALSG--EKGDQGPPGDPG----SPGSPGPAGPAGPPGYGPQGEP 624
Query: 83 AAERGAEGVVRAVRPGP 99
+ G +GV A PGP
Sbjct: 625 GLQ-GTQGVPGA--PGP 638
Score = 25.8 bits (55), Expect = 7.7
Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 22 PPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQ 81
PPG RGAR QGP + G +G G P G GRP +G
Sbjct: 361 PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPG----WPGLKGSKGERGRPGKDAMGT 416
Query: 82 HAAERGAEGVVRAVRPGPGHP 102
+ A PGP P
Sbjct: 417 PGSPGCAGSPGLPGSPGPPGP 437
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 29.6 bits (65), Expect = 0.53
Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 2 EVAIQGWLKGPGHL-LRSLLEPPGTRGARLLQGPQ-------EVWQLGGQCEDGHGAEKG 53
E ++G+ PG R + PG +G + L GP ++ G E G G
Sbjct: 956 EPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTGNPGEPGLRGIPG 1015
Query: 54 GYGVRVEQPVEAGPHVA------AGRPALQEVGQHAAERGAEGVVRAVRPGPGHP 102
G + P G AGRP L + ++G G RPGP P
Sbjct: 1016 SMG-NMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEGTRPGPPGP 1069
Score = 29.3 bits (64), Expect = 0.69
Identities = 27/77 (35%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 23 PGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQH 82
PGT G + L GP+ L G E G G G P GP AG P G+
Sbjct: 571 PGTPGVKGLPGPKGELALSG--EKGDQGPPGDPG----SPGSPGPAGPAGPPGYGPQGEP 624
Query: 83 AAERGAEGVVRAVRPGP 99
+ G +GV A PGP
Sbjct: 625 GLQ-GTQGVPGA--PGP 638
Score = 25.8 bits (55), Expect = 7.7
Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 22 PPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPALQEVGQ 81
PPG RGAR QGP + G +G G P G GRP +G
Sbjct: 361 PPGPRGARGPQGPSGPPGVPGSPGSSRPGLRGAPG----WPGLKGSKGERGRPGKDAMGT 416
Query: 82 HAAERGAEGVVRAVRPGPGHP 102
+ A PGP P
Sbjct: 417 PGSPGCAGSPGLPGSPGPPGP 437
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 29.6 bits (65), Expect = 0.53
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 16 LRSLLEPPGTRGARLLQGPQEVWQLGGQCEDGHGAEKGGYGVRVEQPVEAGPHVAAGRPA 75
L + PPG RG GP V G D K G +P +AGP G+P
Sbjct: 22 LAQIRGPPGERGPPGPPGPPGVPGSDGIDGDNGPPGKAGPPGPKGEPGKAGPDGPDGKPG 81
Query: 76 LQEVGQHAAERGAEGVVRAVRPGPGHP 102
+ + E G G + V+ PG P
Sbjct: 82 IDGLTGAKGEPGPMG-IPGVKGQPGLP 107
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.140 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,771,977
Number of Sequences: 37866
Number of extensions: 291045
Number of successful extensions: 711
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 149
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.