| Name: COL13A1 | Sequence: fasta or formatted (688aa) | NCBI GI: 22027589 | |
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Description: alpha 1 type XIII collagen isoform 9
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Referenced in:
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Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19 | |||
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 7.0 48 3 C cysteine 1.2 8 1 D aspartate 3.1 21 1 E glutamate 6.4 44 1 F phenylalanine 0.9 6 1 G glycine 25.3 174 3 H histidine 1.6 11 1 I isoleucine 2.3 16 2 K lysine 6.5 45 2 L leucine 7.6 52 2 M methionine 1.7 12 1 N asparagine 1.6 11 1 P proline 17.2 118 3 Q glutamine 4.2 29 2 R arginine 4.8 33 4 S serine 3.2 22 2 T threonine 2.5 17 1 V valine 2.3 16 1 W tryptophan 0.3 2 1 Y tyrosine 0.4 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 9 COL13A1 0.994 alpha 1 type XIII collagen isoform 3 COL13A1 0.993 alpha 1 type XIII collagen isoform 2 COL13A1 0.990 alpha 1 type XIII collagen isoform 1 COL13A1 0.984 alpha 1 type XIII collagen isoform 20 COL13A1 0.965 alpha 1 type XIII collagen isoform 8 COL13A1 0.961 alpha 1 type XIII collagen isoform 6 COL13A1 0.960 alpha 1 type XIII collagen isoform 7 COL13A1 0.958 alpha 1 type XIII collagen isoform 4 COL13A1 0.952 alpha 1 type XIII collagen isoform 5 COL13A1 0.948 alpha 1 type XIII collagen isoform 16 COL13A1 0.942 alpha 1 type XIII collagen isoform 17 COL13A1 0.937 alpha 1 type XIII collagen isoform 13 COL13A1 0.936 alpha 1 type XIII collagen isoform 12 COL13A1 0.934 alpha 1 type XIII collagen isoform 11 COL13A1 0.926 alpha 1 type XIII collagen isoform 14 COL13A1 0.923 alpha 1 type XIII collagen isoform 10 COL13A1 0.918 alpha 1 type XIII collagen isoform 18 COL13A1 0.899 alpha 1 type XIII collagen isoform 15 COL13A1 0.856 alpha 1 type XIII collagen isoform 19 COL4A5 0.297 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.297 type IV collagen alpha 5 isoform 1 precursor COL5A2 0.295 alpha 2 type V collagen preproprotein COL4A5 0.295 type IV collagen alpha 5 isoform 2 precursor COL5A1 0.294 alpha 1 type V collagen preproprotein COL3A1 0.289 collagen type III alpha 1 preproprotein COL25A1 0.289 collagen, type XXV, alpha 1 isoform 1 COL11A1 0.285 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.285 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.285 alpha 1 type XI collagen isoform A preproprotein [Ho...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
