COL27A1 25759

Name: COL27A1	Sequence: fasta or formatted (1860aa)		NCBI GI: 32140760
Description: collagen, type XXVII, alpha 1		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 110 6 C cysteine 0.8 15 1 D aspartate 3.7 69 2 E glutamate 3.6 67 1 F phenylalanine 2.6 49 1 G glycine 21.3 397 3 H histidine 1.7 31 2 I isoleucine 2.4 44 2 K lysine 5.1 95 2 L leucine 7.2 134 2 M methionine 2.0 38 2 N asparagine 1.1 21 1 P proline 16.3 303 4 Q glutamine 5.2 96 2 R arginine 5.4 101 2 S serine 5.7 106 3 T threonine 4.7 87 2 V valine 3.8 70 2 W tryptophan 0.5 10 1 Y tyrosine 0.9 17 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 collagen, type XXVII, alpha 1 COL24A1 0.349 collagen, type XXIV, alpha 1 COL5A1 0.249 alpha 1 type V collagen preproprotein COL2A1 0.247 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.247 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A1 0.245 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.245 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.245 alpha 1 type XI collagen isoform A preproprotein [Ho... COL3A1 0.245 collagen type III alpha 1 preproprotein COL1A1 0.242 alpha 1 type I collagen preproprotein COL5A2 0.239 alpha 2 type V collagen preproprotein COL11A2 0.238 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL11A2 0.236 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL1A2 0.236 alpha 2 type I collagen COL5A3 0.234 collagen, type V, alpha 3 preproprotein COL11A2 0.232 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL4A5 0.217 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.211 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.211 type IV collagen alpha 5 isoform 1 precursor COL4A1 0.208 alpha 1 type IV collagen preproprotein COL7A1 0.203 alpha 1 type VII collagen precursor COL22A1 0.203 collagen, type XXII, alpha 1 COL4A3 0.200 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.199 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.199 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.199 alpha 3 type IV collagen isoform 1 precursor COL4A4 0.196 alpha 4 type IV collagen precursor COL4A6 0.190 type IV alpha 6 collagen isoform A precursor COL4A6 0.190 type IV alpha 6 collagen isoform B precursor COL4A2 0.189 alpha 2 type IV collagen preproprotein Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.