| Name: COL13A1 | Sequence: fasta or formatted (664aa) | NCBI GI: 22027599 | |
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Description: alpha 1 type XIII collagen isoform 14
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Referenced in:
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Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19 | |||
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 6.8 45 3 C cysteine 1.1 7 1 D aspartate 3.3 22 1 E glutamate 6.5 43 1 F phenylalanine 0.8 5 1 G glycine 27.0 179 3 H histidine 1.7 11 1 I isoleucine 2.3 15 2 K lysine 6.5 43 2 L leucine 6.8 45 2 M methionine 1.7 11 1 N asparagine 1.5 10 1 P proline 17.6 117 2 Q glutamine 4.1 27 2 R arginine 4.5 30 4 S serine 2.9 19 1 T threonine 2.4 16 1 V valine 2.1 14 1 W tryptophan 0.3 2 1 Y tyrosine 0.5 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 14 COL13A1 0.994 alpha 1 type XIII collagen isoform 10 COL13A1 0.986 alpha 1 type XIII collagen isoform 2 COL13A1 0.985 alpha 1 type XIII collagen isoform 5 COL13A1 0.984 alpha 1 type XIII collagen isoform 4 COL13A1 0.979 alpha 1 type XIII collagen isoform 1 COL13A1 0.977 alpha 1 type XIII collagen isoform 18 COL13A1 0.974 alpha 1 type XIII collagen isoform 20 COL13A1 0.961 alpha 1 type XIII collagen isoform 3 COL13A1 0.960 alpha 1 type XIII collagen isoform 11 COL13A1 0.955 alpha 1 type XIII collagen isoform 8 COL13A1 0.952 alpha 1 type XIII collagen isoform 9 COL13A1 0.950 alpha 1 type XIII collagen isoform 6 COL13A1 0.949 alpha 1 type XIII collagen isoform 7 COL13A1 0.940 alpha 1 type XIII collagen isoform 17 COL13A1 0.940 alpha 1 type XIII collagen isoform 16 COL13A1 0.931 alpha 1 type XIII collagen isoform 15 COL13A1 0.925 alpha 1 type XIII collagen isoform 13 COL13A1 0.924 alpha 1 type XIII collagen isoform 12 COL13A1 0.849 alpha 1 type XIII collagen isoform 19 COL25A1 0.318 collagen, type XXV, alpha 1 isoform 1 COL4A5 0.316 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.315 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.314 type IV collagen alpha 5 isoform 3 precursor COL3A1 0.309 collagen type III alpha 1 preproprotein COL5A1 0.307 alpha 1 type V collagen preproprotein COL5A2 0.307 alpha 2 type V collagen preproprotein COL11A1 0.306 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.306 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.306 alpha 1 type XI collagen isoform A preproprotein [Ho...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
