| Name: COL13A1 | Sequence: fasta or formatted (660aa) | NCBI GI: 22027603 | |
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Description: alpha 1 type XIII collagen isoform 16
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Referenced in:
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Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [686aa] alpha 1 type XIII collagen isoform 11 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19 | |||
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 6.7 44 3 C cysteine 1.1 7 1 D aspartate 3.2 21 1 E glutamate 6.5 43 1 F phenylalanine 0.9 6 1 G glycine 25.9 171 3 H histidine 1.7 11 1 I isoleucine 2.1 14 1 K lysine 6.7 44 2 L leucine 7.3 48 2 M methionine 1.7 11 1 N asparagine 1.7 11 1 P proline 17.3 114 3 Q glutamine 4.2 28 2 R arginine 4.7 31 4 S serine 2.7 18 1 T threonine 2.4 16 1 V valine 2.6 17 1 W tryptophan 0.3 2 1 Y tyrosine 0.5 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 16 COL13A1 0.985 alpha 1 type XIII collagen isoform 4 COL13A1 0.985 alpha 1 type XIII collagen isoform 9 COL13A1 0.981 alpha 1 type XIII collagen isoform 3 COL13A1 0.980 alpha 1 type XIII collagen isoform 2 COL13A1 0.977 alpha 1 type XIII collagen isoform 1 COL13A1 0.971 alpha 1 type XIII collagen isoform 20 COL13A1 0.963 alpha 1 type XIII collagen isoform 17 COL13A1 0.960 alpha 1 type XIII collagen isoform 11 COL13A1 0.952 alpha 1 type XIII collagen isoform 8 COL13A1 0.949 alpha 1 type XIII collagen isoform 14 COL13A1 0.949 alpha 1 type XIII collagen isoform 5 COL13A1 0.948 alpha 1 type XIII collagen isoform 18 COL13A1 0.948 alpha 1 type XIII collagen isoform 6 COL13A1 0.946 alpha 1 type XIII collagen isoform 7 COL13A1 0.946 alpha 1 type XIII collagen isoform 10 COL13A1 0.922 alpha 1 type XIII collagen isoform 13 COL13A1 0.921 alpha 1 type XIII collagen isoform 12 COL13A1 0.895 alpha 1 type XIII collagen isoform 15 COL13A1 0.847 alpha 1 type XIII collagen isoform 19 COL25A1 0.310 collagen, type XXV, alpha 1 isoform 1 COL4A5 0.299 type IV collagen alpha 5 isoform 3 precursor COL5A2 0.298 alpha 2 type V collagen preproprotein COL4A5 0.298 type IV collagen alpha 5 isoform 1 precursor COL3A1 0.297 collagen type III alpha 1 preproprotein COL4A5 0.297 type IV collagen alpha 5 isoform 2 precursor COL5A1 0.295 alpha 1 type V collagen preproprotein COL25A1 0.295 collagen, type XXV, alpha 1 isoform 2 COL11A1 0.292 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.292 alpha 1 type XI collagen isoform C preproprotein [Ho...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
