Guide to the Human Genome
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Name: GRAMD3 Sequence: fasta or formatted (447aa) NCBI GI: 226443011
Description:

GRAM domain containing 3 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {432aa} GRAM domain containing 3 isoform 2
alt prot {328aa} GRAM domain containing 3 isoform 3
alt prot {440aa} GRAM domain containing 3 isoform 4
alt prot {416aa} GRAM domain containing 3 isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         26           2
 C cysteine            1.8          8           1
 D aspartate           4.5         20           1
 E glutamate           6.7         30           2
 F phenylalanine       4.0         18           1
 G glycine             4.0         18           1
 H histidine           2.5         11           2
 I isoleucine          4.7         21           2
 K lysine              8.5         38           3
 L leucine             9.4         42           2
 M methionine          1.6          7           1
 N asparagine          4.7         21           2
 P proline             4.9         22           1
 Q glutamine           6.0         27           2
 R arginine            4.0         18           2
 S serine             11.6         52           5
 T threonine           6.0         27           1
 V valine              6.7         30           2
 W tryptophan          0.7          3           1
 Y tyrosine            1.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GRAM domain containing 3 isoform 1 
GRAMD3                0.900   GRAM domain containing 3 isoform 5 
GRAMD3                0.900   GRAM domain containing 3 isoform 2 
GRAMD3                0.807   GRAM domain containing 3 isoform 4 
GRAMD3                0.724   GRAM domain containing 3 isoform 3 
GRAMD2                0.134   GRAM domain containing 2 
GRAMD1A               0.094   GRAM domain containing 1A isoform 1 
GRAMD1A               0.093   GRAM domain containing 1A isoform 2 
GRAMD1B               0.087   GRAM domain containing 1B 
GRAMD1C               0.084   GRAM domain containing 1C 
TBC1D9                0.043   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D8                0.034   TBC1 domain family, member 8 
TBC1D9B               0.028   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.028   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D8B               0.022   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D8B               0.022   TBC1 domain family, member 8B (with GRAM domain) iso...
GRAMD4                0.015   death-inducing-protein 
FAM133A               0.010   hypothetical protein LOC286499 
NKAP                  0.009   NFKB activating protein 
MTF1                  0.009   metal-regulatory transcription factor 1 
BRD4                  0.009   bromodomain-containing protein 4 isoform long 
GPR110                0.009   G-protein coupled receptor 110 isoform 1 
NEFH                  0.008   neurofilament, heavy polypeptide 200kDa 
MYCBP2                0.008   MYC binding protein 2 
EXO1                  0.008   exonuclease 1 isoform b 
EXO1                  0.008   exonuclease 1 isoform a 
EXO1                  0.008   exonuclease 1 isoform b 
AFF3                  0.008   AF4/FMR2 family, member 3 isoform 2 
AFF3                  0.008   AF4/FMR2 family, member 3 isoform 1 
ATXN7L1               0.008   ataxin 7-like 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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