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Search of human proteins with 226246519
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226246519 zinc finger, MYND-type containing 12 isoform 1
[Homo sapiens]
(365 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Hom... 733 0.0
gi|226246540 zinc finger, MYND-type containing 12 isoform 2 [Hom... 449 e-126
gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens] 39 0.007
gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens] 39 0.007
gi|38505161 tudor domain containing 1 [Homo sapiens] 36 0.062
gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens] 36 0.062
gi|89353295 core-binding factor, runt domain, alpha subunit 2; t... 35 0.14
gi|74229008 core-binding factor, runt domain, alpha subunit 2; t... 35 0.14
gi|4826663 core-binding factor, runt domain, alpha subunit 2; tr... 35 0.14
gi|13489073 egl nine homolog 1 [Homo sapiens] 34 0.24
gi|28329422 acute myelogenous leukemia 1 translocation 1 protein... 33 0.31
gi|28329419 acute myelogenous leukemia 1 translocation 1 protein... 33 0.31
gi|28329416 acute myelogenous leukemia 1 translocation 1 protein... 33 0.31
gi|4757916 acute myelogenous leukemia 1 translocation 1 protein ... 33 0.31
gi|28872803 myeloid translocation gene on chromosome 16 isoform ... 33 0.40
gi|28872805 myeloid translocation gene on chromosome 16 isoform ... 33 0.40
gi|156938257 leucine rich repeat containing 16B [Homo sapiens] 33 0.40
gi|90669931 tetratricopeptide repeat domain 12 [Homo sapiens] 32 0.90
gi|188035871 SET and MYND domain containing 2 [Homo sapiens] 31 2.0
gi|38570062 hypothetical protein LOC51608 [Homo sapiens] 30 2.6
gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens] 30 2.6
gi|18104962 amyloid beta precursor protein-binding protein 2 [Ho... 30 3.4
gi|45243501 BCL2-like 13 (apoptosis facilitator) [Homo sapiens] 30 3.4
gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens] 30 4.4
gi|156523253 RWD domain containing 2A [Homo sapiens] 30 4.4
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 29 5.8
gi|239749940 PREDICTED: similar to deformed epidermal autoregula... 29 5.8
gi|92091572 dedicator of cytokinesis 4 [Homo sapiens] 29 7.6
gi|34304360 nephrocystin 3 [Homo sapiens] 29 7.6
gi|155722985 SMC5 protein [Homo sapiens] 29 7.6
>gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Homo
sapiens]
Length = 365
Score = 733 bits (1893), Expect = 0.0
Identities = 365/365 (100%), Positives = 365/365 (100%)
Query: 1 MNVIYPLAVPKGRRLCCEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKICQLLIPL 60
MNVIYPLAVPKGRRLCCEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKICQLLIPL
Sbjct: 1 MNVIYPLAVPKGRRLCCEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKICQLLIPL 60
Query: 61 RTSMPFYNSEEERQHGLQQLQQRQKYLIEFCYTIAQKYLFEGKHEDAVPAALQSLRFRVK 120
RTSMPFYNSEEERQHGLQQLQQRQKYLIEFCYTIAQKYLFEGKHEDAVPAALQSLRFRVK
Sbjct: 61 RTSMPFYNSEEERQHGLQQLQQRQKYLIEFCYTIAQKYLFEGKHEDAVPAALQSLRFRVK 120
Query: 121 LYGLSSVELVPAYLLLAEASLGLGRIVQAEEYLFQAQWTVLKSTDCSNATHSLLHRNLGL 180
LYGLSSVELVPAYLLLAEASLGLGRIVQAEEYLFQAQWTVLKSTDCSNATHSLLHRNLGL
Sbjct: 121 LYGLSSVELVPAYLLLAEASLGLGRIVQAEEYLFQAQWTVLKSTDCSNATHSLLHRNLGL 180
Query: 181 LYIAKKNYEEARYHLANDIYFASCAFGTEDIRTSGGYFHLANIFYDLKKLDLADTLYTKV 240
LYIAKKNYEEARYHLANDIYFASCAFGTEDIRTSGGYFHLANIFYDLKKLDLADTLYTKV
Sbjct: 181 LYIAKKNYEEARYHLANDIYFASCAFGTEDIRTSGGYFHLANIFYDLKKLDLADTLYTKV 240
Query: 241 SEIWHAYLNNHYQVLSQAHIQQMDLLGKLFENDTGLDEAQEAEAIRILTSILNIRESTSD 300
SEIWHAYLNNHYQVLSQAHIQQMDLLGKLFENDTGLDEAQEAEAIRILTSILNIRESTSD
Sbjct: 241 SEIWHAYLNNHYQVLSQAHIQQMDLLGKLFENDTGLDEAQEAEAIRILTSILNIRESTSD 300
Query: 301 KAPQKTIFVLKILVMFYYLMMNSSKAQEYGMRALSLAKEQQLDVHEQSTIQELLSLISTE 360
KAPQKTIFVLKILVMFYYLMMNSSKAQEYGMRALSLAKEQQLDVHEQSTIQELLSLISTE
Sbjct: 301 KAPQKTIFVLKILVMFYYLMMNSSKAQEYGMRALSLAKEQQLDVHEQSTIQELLSLISTE 360
Query: 361 DHPIT 365
DHPIT
Sbjct: 361 DHPIT 365
>gi|226246540 zinc finger, MYND-type containing 12 isoform 2 [Homo
sapiens]
Length = 255
Score = 449 bits (1155), Expect = e-126
Identities = 227/234 (97%), Positives = 229/234 (97%)
Query: 132 AYLLLAEASLGLGRIVQAEEYLFQAQWTVLKSTDCSNATHSLLHRNLGLLYIAKKNYEEA 191
A+ A A+ GLGRIVQAEEYLFQAQWTVLKSTDCSNATHSLLHRNLGLLYIAKKNYEEA
Sbjct: 22 AWPAAAAAAAGLGRIVQAEEYLFQAQWTVLKSTDCSNATHSLLHRNLGLLYIAKKNYEEA 81
Query: 192 RYHLANDIYFASCAFGTEDIRTSGGYFHLANIFYDLKKLDLADTLYTKVSEIWHAYLNNH 251
RYHLANDIYFASCAFGTEDIRTSGGYFHLANIFYDLKKLDLADTLYTKVSEIWHAYLNNH
Sbjct: 82 RYHLANDIYFASCAFGTEDIRTSGGYFHLANIFYDLKKLDLADTLYTKVSEIWHAYLNNH 141
Query: 252 YQVLSQAHIQQMDLLGKLFENDTGLDEAQEAEAIRILTSILNIRESTSDKAPQKTIFVLK 311
YQVLSQAHIQQMDLLGKLFENDTGLDEAQEAEAIRILTSILNIRESTSDKAPQKTIFVLK
Sbjct: 142 YQVLSQAHIQQMDLLGKLFENDTGLDEAQEAEAIRILTSILNIRESTSDKAPQKTIFVLK 201
Query: 312 ILVMFYYLMMNSSKAQEYGMRALSLAKEQQLDVHEQSTIQELLSLISTEDHPIT 365
ILVMFYYLMMNSSKAQEYGMRALSLAKEQQLDVHEQSTIQELLSLISTEDHPIT
Sbjct: 202 ILVMFYYLMMNSSKAQEYGMRALSLAKEQQLDVHEQSTIQELLSLISTEDHPIT 255
>gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens]
Length = 228
Score = 38.9 bits (89), Expect = 0.007
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C VC + C+ C YYC HQ DW H++ C
Sbjct: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQAC 172
>gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens]
Length = 344
Score = 38.9 bits (89), Expect = 0.007
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C VC + C+ C YYC HQ DW H++ C
Sbjct: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQAC 172
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 35.8 bits (81), Expect = 0.062
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 10 PKGRRLCCEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKICQLLIP 59
P R C C C+ C TYYC Q+ DW S H +C+ + P
Sbjct: 163 PPLRSTTCHRCGLFGSLRCSQCKQTYYCSTACQRRDW-SAHSIVCRPVQP 211
>gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens]
Length = 460
Score = 35.8 bits (81), Expect = 0.062
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 13 RRLCCEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKICQLL 57
R L + ++ R C C YYCG QK+DW + H ++CQ L
Sbjct: 109 RALPSGLSDSKVLRHCKRCRNVYYCGPECQKSDWPA-HRRVCQEL 152
>gi|89353295 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1a [Homo sapiens]
Length = 575
Score = 34.7 bits (78), Expect = 0.14
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C+ C + YCG Q DW+ H ++C
Sbjct: 478 CWNCGRKASETCSGCNIARYCGSFCQHKDWER-HHRLC 514
>gi|74229008 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1c [Homo sapiens]
Length = 595
Score = 34.7 bits (78), Expect = 0.14
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C+ C + YCG Q DW+ H ++C
Sbjct: 498 CWNCGRKASETCSGCNIARYCGSFCQHKDWER-HHRLC 534
>gi|4826663 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1b [Homo sapiens]
Length = 604
Score = 34.7 bits (78), Expect = 0.14
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C+ C + YCG Q DW+ H ++C
Sbjct: 507 CWNCGRKASETCSGCNIARYCGSFCQHKDWER-HHRLC 543
>gi|13489073 egl nine homolog 1 [Homo sapiens]
Length = 426
Score = 33.9 bits (76), Expect = 0.24
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 14 RLCCEVCEAPAERV-CAACTVTYYCGVVHQKADWDSIHEKICQ 55
R CE+C + C+ C ++YC HQ+ DW H+ +CQ
Sbjct: 18 RQYCELCGKMENLLRCSRCRSSFYCCKEHQRQDWKK-HKLVCQ 59
>gi|28329422 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8c [Homo sapiens]
Length = 567
Score = 33.5 bits (75), Expect = 0.31
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C+ C YCG Q DW+ H IC
Sbjct: 478 CWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHIC 514
>gi|28329419 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8c [Homo sapiens]
Length = 567
Score = 33.5 bits (75), Expect = 0.31
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C+ C YCG Q DW+ H IC
Sbjct: 478 CWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHIC 514
>gi|28329416 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8b [Homo sapiens]
Length = 604
Score = 33.5 bits (75), Expect = 0.31
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C+ C YCG Q DW+ H IC
Sbjct: 515 CWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHIC 551
>gi|4757916 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8a [Homo sapiens]
Length = 577
Score = 33.5 bits (75), Expect = 0.31
Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C+ C YCG Q DW+ H IC
Sbjct: 488 CWNCGRKASETCSGCNTARYCGSFCQHKDWEK-HHHIC 524
>gi|28872803 myeloid translocation gene on chromosome 16 isoform
MTG16a [Homo sapiens]
Length = 653
Score = 33.1 bits (74), Expect = 0.40
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C+ C YCG Q DW+ H +C
Sbjct: 556 CWNCGRKASETCSGCNAARYCGSFCQHRDWEK-HHHVC 592
>gi|28872805 myeloid translocation gene on chromosome 16 isoform
MTG16b [Homo sapiens]
Length = 567
Score = 33.1 bits (74), Expect = 0.40
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C+ C YCG Q DW+ H +C
Sbjct: 470 CWNCGRKASETCSGCNAARYCGSFCQHRDWEK-HHHVC 506
>gi|156938257 leucine rich repeat containing 16B [Homo sapiens]
Length = 1372
Score = 33.1 bits (74), Expect = 0.40
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 12/114 (10%)
Query: 215 GGYFHLANIFYDLKKLDLADTLYTKVSEIWHAYLNNHYQVLSQAHIQQMDL--------- 265
GG+ D L + + V I+HA N + +L +H++ DL
Sbjct: 154 GGFSETYAALCDYNGLHCREEVQWDVDTIYHAEDNREFNLLDFSHLESRDLALMVAALAY 213
Query: 266 ---LGKLFENDTGLDEAQEAEAIRILTSILNIRESTSDKAPQKTIFVLKILVMF 316
KL+ D L + + L+ ++ E D A KT FV K+ +F
Sbjct: 214 NQWFTKLYCKDLRLGSEVLEQVLHTLSKSGSLEELVLDNAGLKTDFVQKLAGVF 267
>gi|90669931 tetratricopeptide repeat domain 12 [Homo sapiens]
Length = 705
Score = 32.0 bits (71), Expect = 0.90
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 173 LLHRNLGLLYIAKKNYEEARYHLANDIYFASCAFGTE-DIRTSGGYFHLANIFYDLKKLD 231
+L+ N Y+ ++YE+A C + + D + + YFH+ LK
Sbjct: 141 VLYTNRAQAYMKLEDYEKA---------LVDCEWALKCDEKCTKAYFHMGKANLALKNYS 191
Query: 232 LADTLYTKVSEIWHAYLNNHYQVLSQAHIQQMDLLGKLFENDTGLDEAQEAEAIRILTSI 291
++ Y K+ EI N Q + ++ Q+DL K + QE EA +L S
Sbjct: 192 VSRECYKKILEI-----NPKLQTQVKGYLNQVDLQEKA--------DLQEKEAHELLDSG 238
Query: 292 LNIRESTSD 300
N +T +
Sbjct: 239 KNTAVTTKN 247
>gi|188035871 SET and MYND domain containing 2 [Homo sapiens]
Length = 433
Score = 30.8 bits (68), Expect = 2.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 17 CEVCEAPAERV--CAACTVTYYCGVVHQKADWDSIHEKICQLLI 58
CE C E + C C +YC V QK DW +H+ C ++
Sbjct: 52 CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDW-PMHKLECSPMV 94
>gi|38570062 hypothetical protein LOC51608 [Homo sapiens]
Length = 327
Score = 30.4 bits (67), Expect = 2.6
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 171 HSLLHRNLGLLYIAKKNYEEARYHLANDIYFASCAFGTEDIRTSGGYFHLANIF 224
H LH+ L L ++NY E+RYH + CA + TS G+ ++F
Sbjct: 142 HPRLHQLLALTLWKEQNYCESRYHFLHSADGEGCANMLVEYSTSRGFRSEVDMF 195
>gi|19923997 zinc finger, MYND domain containing 19 [Homo sapiens]
Length = 227
Score = 30.4 bits (67), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 27 VCAACTVTYYCGVVHQKADWDSIHEKICQ 55
+C C V YCG Q+ DW + H+K C+
Sbjct: 186 ICGRCQVARYCGSQCQQKDWPA-HKKHCR 213
>gi|18104962 amyloid beta precursor protein-binding protein 2 [Homo
sapiens]
Length = 585
Score = 30.0 bits (66), Expect = 3.4
Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 33/179 (18%)
Query: 99 LFEGKHEDAVPAALQSLRFRVKLYGLSSVELVPAYLLLAEASLGLGRIVQAEEYLFQAQW 158
+F GK+ V A + L + ++ SS + A L AE ++G+ + E++L A
Sbjct: 321 VFGGKNIH-VATAHEDLAYSSYVHQYSSGKFDNA-LFHAERAIGIITHILPEDHLLLASS 378
Query: 159 TVLKST-------DCSNATHSLLHRNLGLLYIAKKNYEEARYHLANDIYFASC-----AF 206
+K+ DC N K E+ A+D++ +S AF
Sbjct: 379 KRVKALILEEIAIDCHN-----------------KETEQRLLQEAHDLHLSSLQLAKKAF 421
Query: 207 GTEDIRTSGGYFHLANIFYDLKKLDLADTLYTKVSEIWHAYLNNH-YQV-LSQAHIQQM 263
G +++T+ Y +L ++ ++K A+ ++ K +I L Y+V LS H+ +
Sbjct: 422 GEFNVQTAKHYGNLGRLYQSMRKFKEAEEMHIKAIQIKEQLLGQEDYEVALSVGHLASL 480
>gi|45243501 BCL2-like 13 (apoptosis facilitator) [Homo sapiens]
Length = 485
Score = 30.0 bits (66), Expect = 3.4
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 297 STSDKAPQKTIFVLKILVMFYYLMMNSSKAQEYGMRALSLAKEQQLDVHEQSTIQELLSL 356
++S P + K +V+ Y +++ K QE + LS + QLD+ QS QE+L
Sbjct: 2 ASSSTVPLGFHYETKYVVLSYLGLLSQEKLQE---QHLSSPQGVQLDIASQSLDQEILLK 58
Query: 357 ISTE 360
+ TE
Sbjct: 59 VKTE 62
>gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens]
Length = 440
Score = 29.6 bits (65), Expect = 4.4
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKICQL 56
C C A A + C+ C +YC Q W+ H K C L
Sbjct: 394 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVL 432
>gi|156523253 RWD domain containing 2A [Homo sapiens]
Length = 292
Score = 29.6 bits (65), Expect = 4.4
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 257 QAHIQQMDLLGKLFENDTGLDEAQEAEAIRILTSILNIRESTSDKAPQKTIFV--LKILV 314
Q + +M++L +F N + + E + LT+I E T + P K FV L+I
Sbjct: 10 QLQLLEMEMLFSMFPNQGEV----KLEDVNALTNIKRYLEGTREALPPKIEFVITLQIEE 65
Query: 315 MFYYLMMNSSKAQEYGMRALSL-AKEQQLDVHEQSTIQE-LLSLISTED 361
+ + + Y AL L + +LD H+Q + + L S I T D
Sbjct: 66 PKVKIDLQVTMPHSYPYVALQLFGRSSELDRHQQLLLNKGLTSYIGTFD 114
>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
sapiens]
Length = 565
Score = 29.3 bits (64), Expect = 5.8
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C C YC Q+ DW H+ IC
Sbjct: 504 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKD-HQHIC 540
>gi|239749940 PREDICTED: similar to deformed epidermal
autoregulatory factor 1 [Homo sapiens]
Length = 426
Score = 29.3 bits (64), Expect = 5.8
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
C C A C C YC Q+ DW H+ IC
Sbjct: 365 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKD-HQHIC 401
>gi|92091572 dedicator of cytokinesis 4 [Homo sapiens]
Length = 1966
Score = 28.9 bits (63), Expect = 7.6
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 19/86 (22%)
Query: 69 SEEERQHGLQQLQQRQKYLIEFCYTIAQKYLFE----GKHEDAVPAALQSLRFRVKLYGL 124
+E ERQ +Q++ + Q+Y+ F Y + + LF G++E+ +Q L V+ +
Sbjct: 690 TEAERQEHIQEVLKAQEYI--FKYIVQSRRLFSLATGGQNEEEFRCCIQELLMSVRFF-- 745
Query: 125 SSVELVPAYLLLAEASLGLGRIVQAE 150
L++ S G G + Q++
Sbjct: 746 -----------LSQESKGSGALSQSQ 760
>gi|34304360 nephrocystin 3 [Homo sapiens]
Length = 1330
Score = 28.9 bits (63), Expect = 7.6
Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 14/176 (7%)
Query: 165 DCSNATHSLLHRNLGLLYIAKKNYEEARYHLANDIYFASCAFGTEDIRTSGGYFHLANIF 224
DC+ + + NL L KK Y++A + A + + HLA ++
Sbjct: 1133 DCAQSLN-----NLAALCNEKKQYDKAEELYERALDIRRRALAPDHPSLAYTVKHLAILY 1187
Query: 225 YDLKKLDLADTLYTKVSEIWHAYLNNHYQVLSQAHIQQMDLLGKLFENDTGLDEAQEAEA 284
+ KLD A LY EI + ++ A + L ++ + EA
Sbjct: 1188 KKMGKLDKAVPLYELAVEIRQKSFGPKHPSVATALVNLAVLYSQM---------KKHVEA 1238
Query: 285 IRILTSILNIRESTSDKAPQKTIFVLKILVMFYYLMMNSSKAQEYGMRALSLAKEQ 340
+ + L I E + + + LK L + Y + KA E RA+ + + +
Sbjct: 1239 LPLYERALKIYEDSLGRMHPRVGETLKNLAVLSYEGGDFEKAAELYKRAMEIKEAE 1294
>gi|155722985 SMC5 protein [Homo sapiens]
Length = 1101
Score = 28.9 bits (63), Expect = 7.6
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 259 HIQQMDLLGKLFENDTGLD----EAQEAEAIRILTSILNIRESTSDKAPQKTIFVLKILV 314
HI DL +FE+ ++ E ++ + +R+ +++ + S +DKAP +++ LK
Sbjct: 503 HIPSNDLRAFVFESQEDMEVFLKEVRDNKKLRV-NAVIAPKSSYADKAPSRSLNELKQYG 561
Query: 315 MFYYL 319
F YL
Sbjct: 562 FFSYL 566
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,541,522
Number of Sequences: 37866
Number of extensions: 513833
Number of successful extensions: 1276
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 37
length of query: 365
length of database: 18,247,518
effective HSP length: 104
effective length of query: 261
effective length of database: 14,309,454
effective search space: 3734767494
effective search space used: 3734767494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.