Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DEAF1 Sequence: fasta or formatted (565aa) NCBI GI: 38016945
Description:

deformed epidermal autoregulatory factor 1

Referenced in:

Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         88           8
 C cysteine            2.8         16           2
 D aspartate           4.4         25           2
 E glutamate           7.4         42           2
 F phenylalanine       1.8         10           1
 G glycine             6.4         36           2
 H histidine           2.3         13           1
 I isoleucine          2.8         16           1
 K lysine              4.4         25           2
 L leucine             6.4         36           2
 M methionine          1.6          9           1
 N asparagine          3.0         17           1
 P proline             7.6         43           3
 Q glutamine           3.9         22           2
 R arginine            4.1         23           2
 S serine              7.4         42           2
 T threonine           8.1         46           2
 V valine              7.1         40           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   deformed epidermal autoregulatory factor 1 
LOC100294411          0.528   PREDICTED: similar to deformed epidermal autoregula...
RUNX1T1               0.049   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.049   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.049   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.049   acute myelogenous leukemia 1 translocation 1 protein ...
CBFA2T3               0.044   myeloid translocation gene on chromosome 16 isoform ...
CBFA2T3               0.044   myeloid translocation gene on chromosome 16 isoform ...
CBFA2T2               0.039   core-binding factor, runt domain, alpha subunit 2; t...
CBFA2T2               0.039   core-binding factor, runt domain, alpha subunit 2; t...
CBFA2T2               0.039   core-binding factor, runt domain, alpha subunit 2; tr...
SP100                 0.038   nuclear antigen Sp100 isoform 1 
SP100                 0.038   nuclear antigen Sp100 isoform 2 
SP140                 0.036   SP140 nuclear body protein isoform 1 
SP140L                0.034   SP140 nuclear body protein-like 
SP110                 0.030   SP110 nuclear body protein isoform b 
SP110                 0.028   SP110 nuclear body protein isoform a 
SP110                 0.028   SP110 nuclear body protein isoform c 
ZMYND8                0.026   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.026   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.026   zinc finger, MYND-type containing 8 isoform b 
GMEB2                 0.023   glucocorticoid modulatory element binding protein 2 [...
GMEB1                 0.019   glucocorticoid modulatory element binding protein 1 ...
GMEB1                 0.019   glucocorticoid modulatory element binding protein 1 ...
TDRD1                 0.018   tudor domain containing 1 
USP19                 0.018   ubiquitin thioesterase 19 
ZMYND11               0.015   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.015   zinc finger, MYND domain containing 11 isoform a [H...
HOXA13                0.015   homeobox A13 
EGLN1                 0.014   egl nine homolog 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press