Guide to the Human Genome
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Name: LOC100294411 Sequence: fasta or formatted (426aa) NCBI GI: 239749940
Description:

PREDICTED: similar to deformed epidermal autoregulatory factor 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.5         79           8
 C cysteine            3.1         13           2
 D aspartate           4.7         20           2
 E glutamate           8.2         35           2
 F phenylalanine       2.1          9           1
 G glycine             4.5         19           2
 H histidine           2.8         12           1
 I isoleucine          2.1          9           1
 K lysine              4.0         17           2
 L leucine             5.9         25           2
 M methionine          1.9          8           1
 N asparagine          2.8         12           1
 P proline             7.3         31           3
 Q glutamine           3.8         16           2
 R arginine            3.1         13           2
 S serine              7.0         30           1
 T threonine           8.2         35           2
 V valine              8.2         35           1
 W tryptophan          0.5          2           1
 Y tyrosine            1.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to deformed epidermal autoregula... 
DEAF1                 0.713   deformed epidermal autoregulatory factor 1 
RUNX1T1               0.066   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.066   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.066   acute myelogenous leukemia 1 translocation 1 protein...
RUNX1T1               0.066   acute myelogenous leukemia 1 translocation 1 protein ...
CBFA2T3               0.060   myeloid translocation gene on chromosome 16 isoform ...
CBFA2T3               0.060   myeloid translocation gene on chromosome 16 isoform ...
CBFA2T2               0.052   core-binding factor, runt domain, alpha subunit 2; t...
CBFA2T2               0.052   core-binding factor, runt domain, alpha subunit 2; t...
CBFA2T2               0.052   core-binding factor, runt domain, alpha subunit 2; tr...
MUC20                 0.037   mucin 20 isoform S 
MUC20                 0.037   mucin 20 isoform L 
ZMYND8                0.035   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.035   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.035   zinc finger, MYND-type containing 8 isoform b 
KIAA0754              0.028   hypothetical protein LOC643314 
TDRD1                 0.024   tudor domain containing 1 
USP19                 0.024   ubiquitin thioesterase 19 
SNAP91                0.023   synaptosomal-associated protein, 91kDa homolog 
ZMYND11               0.021   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.021   zinc finger, MYND domain containing 11 isoform a [H...
LOC100294236          0.021   PREDICTED: similar to diffuse panbronchiolitis crit...
HOXA13                0.021   homeobox A13 
EGLN1                 0.019   egl nine homolog 1 
FAM48B1               0.019   hypothetical protein LOC100130302 
FAM9A                 0.019   family with sequence similarity 9, member A 
LOC100129890          0.017   PREDICTED: hypothetical protein 
AMOT                  0.017   angiomotin isoform 2 
AMOT                  0.017   angiomotin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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