SMC5 5786

Name: SMC5	Sequence: fasta or formatted (1101aa)		NCBI GI: 155722985
Description: SMC5 protein		Referenced in: DNases, Recombination, and DNA Repair
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.1 45 2 C cysteine 2.0 22 2 D aspartate 4.3 47 2 E glutamate 11.4 126 4 F phenylalanine 3.3 36 2 G glycine 3.0 33 2 H histidine 2.0 22 2 I isoleucine 5.7 63 2 K lysine 9.6 106 3 L leucine 9.6 106 2 M methionine 2.4 26 1 N asparagine 5.4 60 2 P proline 3.7 41 2 Q glutamine 6.1 67 2 R arginine 7.3 80 5 S serine 5.8 64 2 T threonine 5.3 58 2 V valine 6.1 67 2 W tryptophan 0.5 5 1 Y tyrosine 2.5 27 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 SMC5 protein SMC6 0.055 SMC6 protein SMC6 0.055 SMC6 protein CCDC88A 0.031 coiled-coil domain containing 88A isoform 2 CCDC88A 0.030 coiled-coil domain containing 88A isoform 1 MYH9 0.029 myosin, heavy polypeptide 9, non-muscle MYH10 0.029 myosin, heavy polypeptide 10, non-muscle CENPE 0.028 centromere protein E EEA1 0.027 early endosome antigen 1, 162kD SMC2 0.027 structural maintenance of chromosomes 2 SMC2 0.027 structural maintenance of chromosomes 2 SMC2 0.027 structural maintenance of chromosomes 2 TPR 0.025 nuclear pore complex-associated protein TPR GOLGA4 0.025 golgi autoantigen, golgin subfamily a, 4 LOC283685 0.025 PREDICTED: golgi autoantigen, golgin subfamily a-li... KTN1 0.025 kinectin 1 isoform a KTN1 0.025 kinectin 1 isoform a FHAD1 0.024 forkhead-associated (FHA) phosphopeptide binding do... NUMA1 0.024 nuclear mitotic apparatus protein 1 GCC2 0.023 GRIP and coiled-coil domain-containing 2 MYH11 0.023 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... MYH11 0.023 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... CCDC147 0.023 coiled-coil domain containing 147 CCDC18 0.023 sarcoma antigen NY-SAR-41 CENPF 0.023 centromere protein F KTN1 0.022 kinectin 1 isoform c DSP 0.022 desmoplakin isoform I LOC440243 0.022 PREDICTED: Putative golgin subfamily A member 6-lik... CGNL1 0.022 cingulin-like 1 KTN1 0.021 kinectin 1 isoform b Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.