LRRC16B 6053

Name: LRRC16B	Sequence: fasta or formatted (1372aa)		NCBI GI: 156938257
Description: leucine rich repeat containing 16B		Referenced in: Leucine-rich Repeat Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.1 97 2 C cysteine 2.0 28 2 D aspartate 4.8 66 2 E glutamate 6.8 93 3 F phenylalanine 2.8 39 2 G glycine 7.5 103 3 H histidine 2.6 35 2 I isoleucine 2.2 30 1 K lysine 4.4 61 2 L leucine 12.8 175 3 M methionine 1.2 17 1 N asparagine 3.5 48 2 P proline 8.2 112 8 Q glutamine 5.2 72 2 R arginine 7.1 97 3 S serine 9.6 132 3 T threonine 5.2 71 2 V valine 4.8 66 2 W tryptophan 1.0 14 1 Y tyrosine 1.2 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 leucine rich repeat containing 16B LRRC16A 0.302 leucine rich repeat containing 16A RLTPR 0.258 RGD motif, leucine rich repeats, tropomodulin domain... NLRC3 0.025 NOD3 protein PRB2 0.015 proline-rich protein BstNI subfamily 2 SHANK3 0.014 SH3 and multiple ankyrin repeat domains 3 PRB1 0.013 proline-rich protein BstNI subfamily 1 isoform 1 pre... SRRM1 0.013 serine/arginine repetitive matrix 1 PCLO 0.013 piccolo isoform 2 PCLO 0.013 piccolo isoform 1 SYNJ1 0.013 synaptojanin 1 isoform a WIPF1 0.013 WAS/WASL interacting protein family, member 1 [Homo... WIPF1 0.013 WAS/WASL interacting protein family, member 1 SYNJ1 0.012 synaptojanin 1 isoform b ATN1 0.012 atrophin-1 ATN1 0.012 atrophin-1 PRB3 0.012 proline-rich protein BstNI subfamily 3 precursor [H... COL22A1 0.012 collagen, type XXII, alpha 1 COL7A1 0.012 alpha 1 type VII collagen precursor NACA 0.012 nascent polypeptide-associated complex alpha subuni... COL1A1 0.012 alpha 1 type I collagen preproprotein MLL2 0.012 myeloid/lymphoid or mixed-lineage leukemia 2 WIPF2 0.012 WIRE protein SYNJ1 0.011 synaptojanin 1 isoform c C14orf166B 0.011 hypothetical protein LOC145497 KDM6B 0.011 lysine (K)-specific demethylase 6B COL2A1 0.011 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.011 collagen, type II, alpha 1 isoform 2 precursor [Hom... PRG4 0.011 proteoglycan 4 isoform D PRG4 0.011 proteoglycan 4 isoform C Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.