Guide to the Human Genome
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Name: VWA5B2 Sequence: fasta or formatted (1242aa) NCBI GI: 222352129
Description:

von Willebrand factor A domain containing 5B2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0        137           3
 C cysteine            2.9         36           2
 D aspartate           4.7         58           2
 E glutamate           5.0         62           2
 F phenylalanine       2.6         32           1
 G glycine             8.8        109           2
 H histidine           2.5         31           2
 I isoleucine          1.4         17           2
 K lysine              1.0         13           1
 L leucine            11.6        144           3
 M methionine          1.0         12           1
 N asparagine          1.1         14           2
 P proline            11.8        146           3
 Q glutamine           4.6         57           2
 R arginine            7.2         90           3
 S serine              9.6        119           3
 T threonine           5.1         63           2
 V valine              5.2         65           2
 W tryptophan          1.9         23           1
 Y tyrosine            1.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   von Willebrand factor A domain containing 5B2 [Homo... 
VWA5B1                0.200   von Willebrand factor A domain containing 5B1 [Homo...
VWA5A                 0.046   BCSC-1 isoform 1 
VWA5A                 0.046   BCSC-1 isoform 1 
VWA5A                 0.025   BCSC-1 isoform 2 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.015   PREDICTED: hypothetical protein LOC80164 
NACA                  0.013   nascent polypeptide-associated complex alpha subuni...
IGSF9                 0.012   immunoglobulin superfamily, member 9 isoform a [Hom...
IGSF9                 0.012   immunoglobulin superfamily, member 9 isoform b [Hom...
BAT2                  0.011   HLA-B associated transcript-2 
PRB2                  0.011   proline-rich protein BstNI subfamily 2 
FLJ22184              0.011   PREDICTED: hypothetical protein FLJ22184 
SYNJ1                 0.010   synaptojanin 1 isoform c 
MAGEE1                0.010   melanoma antigen family E, 1 
COL27A1               0.010   collagen, type XXVII, alpha 1 
HCN4                  0.010   hyperpolarization activated cyclic nucleotide-gated p...
ZNF828                0.009   zinc finger protein 828 
TAF4                  0.009   TBP-associated factor 4 
C1orf127              0.009   hypothetical protein LOC148345 
SF3B4                 0.009   splicing factor 3b, subunit 4 
SYNJ1                 0.009   synaptojanin 1 isoform a 
SYNJ1                 0.009   synaptojanin 1 isoform b 
C6orf132              0.009   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.009   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.009   PREDICTED: hypothetical protein LOC647024 
SYNJ1                 0.009   synaptojanin 1 isoform d 
COL16A1               0.009   alpha 1 type XVI collagen precursor 
SRRM2                 0.009   splicing coactivator subunit SRm300 
PARP4                 0.009   poly (ADP-ribose) polymerase family, member 4 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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