Guide to the Human Genome
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Name: SYNJ1 Sequence: fasta or formatted (1526aa) NCBI GI: 237757326
Description:

synaptojanin 1 isoform d

Referenced in:

Inositol Pathways
Synapses

Other entries for this name:
alt prot [1350aa] synaptojanin 1 isoform b
alt prot [1612aa] synaptojanin 1 isoform a
alt prot [1295aa] synaptojanin 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9        106           2
 C cysteine            1.3         20           1
 D aspartate           5.2         79           2
 E glutamate           5.8         89           4
 F phenylalanine       5.0         76           2
 G glycine             6.1         93           2
 H histidine           1.7         26           1
 I isoleucine          4.1         63           2
 K lysine              5.5         84           2
 L leucine             9.5        145           3
 M methionine          1.6         25           1
 N asparagine          3.9         60           2
 P proline             8.2        125           5
 Q glutamine           4.8         74           2
 R arginine            5.3         81           3
 S serine             10.6        162           4
 T threonine           5.4         83           2
 V valine              5.9         90           2
 W tryptophan          1.2         19           1
 Y tyrosine            1.7         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptojanin 1 isoform d 
SYNJ1                 0.987   synaptojanin 1 isoform a 
SYNJ1                 0.811   synaptojanin 1 isoform c 
SYNJ1                 0.809   synaptojanin 1 isoform b 
SYNJ2                 0.382   synaptojanin 2 
INPP5B                0.061   inositol polyphosphate-5-phosphatase, 75kDa precurs...
OCRL                  0.060   phosphatidylinositol polyphosphate 5-phosphatase iso...
OCRL                  0.060   phosphatidylinositol polyphosphate 5-phosphatase iso...
SACM1L                0.060   suppressor of actin 1 
INPP5F                0.057   inositol polyphosphate-5-phosphatase F 
INPP5D                0.049   SH2 containing inositol phosphatase isoform b 
INPP5D                0.049   SH2 containing inositol phosphatase isoform a 
INPP5J                0.044   phosphatidylinositol (4,5) bisphosphate 5-phosphatas...
INPPL1                0.043   inositol polyphosphate phosphatase-like 1 
INPP5E                0.037   inositol polyphosphate-5-phosphatase E 
INPP5K                0.036   inositol polyphosphate-5-phosphatase K isoform 1 [Ho...
FIG4                  0.035   Sac domain-containing inositol phosphatase 3 
INPP5K                0.033   inositol polyphosphate-5-phosphatase K isoform 2 [H...
INPP5K                0.033   inositol polyphosphate-5-phosphatase K isoform 2 [Ho...
FLJ22184              0.024   PREDICTED: hypothetical protein FLJ22184 
MUC2                  0.023   mucin 2 precursor 
PRG4                  0.022   proteoglycan 4 isoform D 
PRG4                  0.022   proteoglycan 4 isoform C 
PRG4                  0.022   proteoglycan 4 isoform B 
PRG4                  0.022   proteoglycan 4 isoform A 
NACA                  0.022   nascent polypeptide-associated complex alpha subuni...
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
RAPH1                 0.021   Ras association and pleckstrin homology domains 1 is...
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
RERE                  0.020   atrophin-1 like protein isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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