COL16A1 36

Name: COL16A1	Sequence: fasta or formatted (1604aa)		NCBI GI: 100913220
Description: alpha 1 type XVI collagen precursor		Referenced in: Collagen
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 85 3 C cysteine 2.0 32 2 D aspartate 3.2 52 1 E glutamate 5.7 92 2 F phenylalanine 1.9 30 1 G glycine 24.4 391 2 H histidine 1.2 19 1 I isoleucine 2.6 41 2 K lysine 5.4 87 2 L leucine 6.2 99 3 M methionine 1.6 26 1 N asparagine 1.4 23 2 P proline 17.6 282 2 Q glutamine 4.9 79 2 R arginine 3.9 63 2 S serine 4.7 76 3 T threonine 2.7 43 2 V valine 3.9 63 2 W tryptophan 0.5 8 1 Y tyrosine 0.8 13 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 alpha 1 type XVI collagen precursor COL4A5 0.264 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.263 type IV collagen alpha 5 isoform 3 precursor COL4A5 0.259 type IV collagen alpha 5 isoform 1 precursor COL4A1 0.258 alpha 1 type IV collagen preproprotein COL22A1 0.248 collagen, type XXII, alpha 1 COL4A3 0.248 alpha 3 type IV collagen isoform 5 precursor COL4A3 0.248 alpha 3 type IV collagen isoform 4 precursor COL4A3 0.248 alpha 3 type IV collagen isoform 2 precursor COL4A3 0.248 alpha 3 type IV collagen isoform 1 precursor COL4A4 0.242 alpha 4 type IV collagen precursor COL7A1 0.242 alpha 1 type VII collagen precursor COL11A1 0.239 alpha 1 type XI collagen isoform C preproprotein [Ho... COL5A2 0.233 alpha 2 type V collagen preproprotein COL5A1 0.231 alpha 1 type V collagen preproprotein COL11A2 0.231 collagen, type XI, alpha 2 isoform 2 preproprotein ... COL4A6 0.231 type IV alpha 6 collagen isoform A precursor COL4A6 0.231 type IV alpha 6 collagen isoform B precursor COL2A1 0.230 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL11A1 0.230 alpha 1 type XI collagen isoform B preproprotein [Ho... COL2A1 0.230 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL11A1 0.229 alpha 1 type XI collagen isoform A preproprotein [Ho... COL3A1 0.228 collagen type III alpha 1 preproprotein COL11A2 0.228 collagen, type XI, alpha 2 isoform 1 preproprotein ... COL1A1 0.228 alpha 1 type I collagen preproprotein COL11A2 0.224 collagen, type XI, alpha 2 isoform 3 preproprotein ... COL4A2 0.224 alpha 2 type IV collagen preproprotein COL5A3 0.220 collagen, type V, alpha 3 preproprotein COL1A2 0.214 alpha 2 type I collagen COL27A1 0.202 collagen, type XXVII, alpha 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.