Guide to the Human Genome
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Name: PARP4 Sequence: fasta or formatted (1724aa) NCBI GI: 112789550
Description:

poly (ADP-ribose) polymerase family, member 4

Referenced in:

Noncoding RNAs and Development
polyADP-Ribose Polymerase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9        101           2
 C cysteine            2.1         37           1
 D aspartate           5.2         89           2
 E glutamate           7.8        134           3
 F phenylalanine       4.5         78           2
 G glycine             5.2         89           2
 H histidine           2.7         46           2
 I isoleucine          5.2         90           2
 K lysine              6.3        109           3
 L leucine            10.8        187           3
 M methionine          2.1         36           2
 N asparagine          3.1         53           1
 P proline             6.0        103           3
 Q glutamine           5.3         91           3
 R arginine            3.6         62           2
 S serine              9.3        160           3
 T threonine           5.7         98           2
 V valine              6.1        106           3
 W tryptophan          1.0         18           1
 Y tyrosine            2.1         37           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   poly (ADP-ribose) polymerase family, member 4 [Homo... 
VWA5A                 0.040   BCSC-1 isoform 1 
VWA5A                 0.040   BCSC-1 isoform 1 
PARP1                 0.026   poly (ADP-ribose) polymerase family, member 1 [Homo...
VWA5A                 0.026   BCSC-1 isoform 2 
VWA5B1                0.023   von Willebrand factor A domain containing 5B1 [Homo...
PARP2                 0.023   poly (ADP-ribose) polymerase family, member 2 isofo...
PARP2                 0.023   poly (ADP-ribose) polymerase family, member 2 isofo...
PARP3                 0.016   poly (ADP-ribose) polymerase family, member 3 isofo...
PARP3                 0.016   poly (ADP-ribose) polymerase family, member 3 isofo...
ITIH4                 0.013   inter-alpha (globulin) inhibitor H4 
ITIH3                 0.008   inter-alpha (globulin) inhibitor H3 preproprotein [...
TNKS2                 0.007   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
POLR2A                0.006   DNA-directed RNA polymerase II A 
TNKS                  0.006   tankyrase, TRF1-interacting ankyrin-related ADP-ribo...
VWA5B2                0.006   von Willebrand factor A domain containing 5B2 [Homo...
ITIH1                 0.006   inter-alpha (globulin) inhibitor H1 
BEND4                 0.005   BEN domain containing 4 isoform b 
BEND4                 0.005   BEN domain containing 4 isoform a 
FLJ22184              0.005   PREDICTED: hypothetical protein FLJ22184 
KTN1                  0.005   kinectin 1 isoform b 
ITIH5L                0.004   inter-alpha (globulin) inhibitor H5-like 
ATN1                  0.004   atrophin-1 
ATN1                  0.004   atrophin-1 
CCNK                  0.004   cyclin K isoform 1 
MAGEC1                0.004   melanoma antigen family C, 1 
WIPF2                 0.004   WIRE protein 
RERE                  0.004   atrophin-1 like protein isoform b 
RERE                  0.004   atrophin-1 like protein isoform a 
RERE                  0.004   atrophin-1 like protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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