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Search of human proteins with 21704287
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21704287 sialidase 4 [Homo sapiens]
(496 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21704287 sialidase 4 [Homo sapiens] 1043 0.0
gi|117190519 sialidase 3 [Homo sapiens] 337 1e-92
gi|222352170 neuraminidase 2 [Homo sapiens] 228 7e-60
gi|4557791 neuraminidase precursor [Homo sapiens] 67 5e-11
gi|222446620 hypothetical protein LOC342346 [Homo sapiens] 43 6e-04
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 43 8e-04
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 42 0.001
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 42 0.001
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 41 0.002
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 41 0.003
gi|7706501 WW domain binding protein 11 [Homo sapiens] 40 0.005
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 40 0.006
gi|11386197 forkhead box E3 [Homo sapiens] 40 0.006
gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 39 0.008
gi|118344450 cell death inducing protein [Homo sapiens] 39 0.008
gi|22027541 programmed cell death 7 [Homo sapiens] 39 0.008
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 39 0.011
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 39 0.011
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 39 0.011
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 39 0.011
gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens] 39 0.011
gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens] 39 0.011
gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens] 39 0.011
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 39 0.014
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 39 0.014
gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens] 39 0.014
gi|121114296 caudal type homeobox 1 [Homo sapiens] 38 0.019
gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo s... 38 0.019
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 38 0.019
gi|33286446 opioid growth factor receptor [Homo sapiens] 37 0.032
>gi|21704287 sialidase 4 [Homo sapiens]
Length = 496
Score = 1043 bits (2697), Expect = 0.0
Identities = 496/496 (100%), Positives = 496/496 (100%)
Query: 1 MMSSAAFPRWLSMGVPRTPSRTVLFERERTGLTYRVPSLLPVPPGPTLLAFVEQRLSPDD 60
MMSSAAFPRWLSMGVPRTPSRTVLFERERTGLTYRVPSLLPVPPGPTLLAFVEQRLSPDD
Sbjct: 1 MMSSAAFPRWLSMGVPRTPSRTVLFERERTGLTYRVPSLLPVPPGPTLLAFVEQRLSPDD 60
Query: 61 SHAHRLVLRRGTLAGGSVRWGALHVLGTAALAEHRSMNPCPVHDAGTGTVFLFFIAVLGH 120
SHAHRLVLRRGTLAGGSVRWGALHVLGTAALAEHRSMNPCPVHDAGTGTVFLFFIAVLGH
Sbjct: 61 SHAHRLVLRRGTLAGGSVRWGALHVLGTAALAEHRSMNPCPVHDAGTGTVFLFFIAVLGH 120
Query: 121 TPEAVQIATGRNAARLCCVASRDAGLSWGSARDLTEEAIGGAVQDWATFAVGPGHGVQLP 180
TPEAVQIATGRNAARLCCVASRDAGLSWGSARDLTEEAIGGAVQDWATFAVGPGHGVQLP
Sbjct: 121 TPEAVQIATGRNAARLCCVASRDAGLSWGSARDLTEEAIGGAVQDWATFAVGPGHGVQLP 180
Query: 181 SGRLLVPAYTYRVDRRECFGKICRTSPHSFAFYSDDHGRTWRCGGLVPNLRSGECQLAAV 240
SGRLLVPAYTYRVDRRECFGKICRTSPHSFAFYSDDHGRTWRCGGLVPNLRSGECQLAAV
Sbjct: 181 SGRLLVPAYTYRVDRRECFGKICRTSPHSFAFYSDDHGRTWRCGGLVPNLRSGECQLAAV 240
Query: 241 DGGQAGSFLYCNARSPLGSRVQALSTDEGTSFLPAERVASLPETAWGCQGSIVGFPAPAP 300
DGGQAGSFLYCNARSPLGSRVQALSTDEGTSFLPAERVASLPETAWGCQGSIVGFPAPAP
Sbjct: 241 DGGQAGSFLYCNARSPLGSRVQALSTDEGTSFLPAERVASLPETAWGCQGSIVGFPAPAP 300
Query: 301 NRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPG 360
NRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPG
Sbjct: 301 NRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPG 360
Query: 361 PRPGVSGDVGSWTLALPMPFAAPPQSPTWLLYSHPVGRRARLHMGIRLSQSPLDPRSWTE 420
PRPGVSGDVGSWTLALPMPFAAPPQSPTWLLYSHPVGRRARLHMGIRLSQSPLDPRSWTE
Sbjct: 361 PRPGVSGDVGSWTLALPMPFAAPPQSPTWLLYSHPVGRRARLHMGIRLSQSPLDPRSWTE 420
Query: 421 PWVIYEGPSGYSDLASIGPAPEGGLVFACLYESGARTSYDEISFCTFSLREVLENVPASP 480
PWVIYEGPSGYSDLASIGPAPEGGLVFACLYESGARTSYDEISFCTFSLREVLENVPASP
Sbjct: 421 PWVIYEGPSGYSDLASIGPAPEGGLVFACLYESGARTSYDEISFCTFSLREVLENVPASP 480
Query: 481 KPPNLGDKPRGCCWPS 496
KPPNLGDKPRGCCWPS
Sbjct: 481 KPPNLGDKPRGCCWPS 496
>gi|117190519 sialidase 3 [Homo sapiens]
Length = 461
Score = 337 bits (865), Expect = 1e-92
Identities = 194/460 (42%), Positives = 250/460 (54%), Gaps = 59/460 (12%)
Query: 26 ERERTGLTYRVPSLLPVPPGPTLLAFVEQRLSPDDSHAHRLVLRRGTLAGGSVRWGALHV 85
+ + G+TYR+P+LL +PP T LAF E+R + D A LVLRRG G V+WG L
Sbjct: 49 QEDDRGITYRIPALLYIPPTHTFLAFAEKRSTRRDEDALHLVLRRGLRIGQLVQWGPLKP 108
Query: 86 LGTAALAEHRSMNPCPVHDAGTGTVFLFFIAVLGHTPEAVQIATGRNAARLCCVASRDAG 145
L A L HR+MNPCPV + +G VFLFFI V GH E QI +GRNAARLC + S+DAG
Sbjct: 109 LMEATLPGHRTMNPCPVWEQKSGCVFLFFICVRGHVTERQQIVSGRNAARLCFIYSQDAG 168
Query: 146 LSWGSARDLTEEAIGGAVQDWATFAVGPGHGVQLPSGRLLVPAYTYRVDR-RECFGKICR 204
SW RDLTEE IG ++ WATFAVGPGHG+QL SGRL++PAYTY + CF C+
Sbjct: 169 CSWSEVRDLTEEVIGSELKHWATFAVGPGHGIQLQSGRLVIPAYTYYIPSWFFCFQLPCK 228
Query: 205 TSPHSFAFYSDDHGRTWRCGGLVPNLRSGECQLAAVDGGQAGSFLYCNARSPLGSRVQAL 264
T PHS YSDD G TW G L+ + + EC++A V G LYC+AR+P R +AL
Sbjct: 229 TRPHSLMIYSDDLGVTWHHGRLIRPMVTVECEVAEVTGRAGHPVLYCSARTPNRCRAEAL 288
Query: 265 STDEGTSFLPAERVASLPETAWGCQGSIVGF-PAPAPNRPRDDSWSVGPGSPLQPPLLGP 323
STD G F L E GCQGS+V F P P+R +D S
Sbjct: 289 STDHGEGFQRLALSRQLCEPPHGCQGSVVSFRPLEIPHRCQDSS---------------- 332
Query: 324 GVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPRPGVSGDVGSWTLALPMPFAAP 383
D P PG S L + A
Sbjct: 333 ----------------------------SKDAPTIQQSSPGSS---------LRLEEEAG 355
Query: 384 PQSPTWLLYSHPVGRRARLHMGIRLSQSPLDPRSWTEPWVIYEGPSGYSDLASIGPAPEG 443
S +WLLYSHP R+ R+ +GI L+Q+PL+ W+ PW+++ GP GYSDLA++ E
Sbjct: 356 TPSESWLLYSHPTSRKQRVDLGIYLNQTPLEAACWSRPWILHCGPCGYSDLAAL---EEE 412
Query: 444 GLVFACLYESGARTSYDEISFCTFSLREVLENVPASPKPP 483
GL F CL+E G + ++I+F F+ RE+L ++ P
Sbjct: 413 GL-FGCLFECGTKQECEQIAFRLFTHREILSHLQGDCTSP 451
>gi|222352170 neuraminidase 2 [Homo sapiens]
Length = 380
Score = 228 bits (582), Expect = 7e-60
Identities = 149/342 (43%), Positives = 186/342 (54%), Gaps = 36/342 (10%)
Query: 34 YRVPSLLPVPPGPTLLAFVEQRLSPDDSHAHRLVLRRGTLAGGS--VRWGALHVLGTAAL 91
YR+P+LL +P +LLAF EQR S D HA +VLRRG + V+W A V+ A L
Sbjct: 20 YRIPALLYLPGQQSLLAFAEQRASKKDEHAELIVLRRGDYDAPTHQVQWQAQEVVAQARL 79
Query: 92 AEHRSMNPCPVHDAGTGTVFLFFIAVLGHTPEAVQIATGRNAARLCCVASRDAGLSWGSA 151
HRSMNPCP++DA TGT+FLFFIA+ G E Q+ T N RLC V S D G +W S
Sbjct: 80 DGHRSMNPCPLYDAQTGTLFLFFIAIPGQVTEQQQLQTRANVTRLCQVTSTDHGRTWSSP 139
Query: 152 RDLTEEAIGGAVQDWATFAVGPGHGVQL--PSGRLLVPAYTYRVDRRECFGKICRTSPHS 209
RDLT+ AIG A ++W+TFAVGPGH +QL + L+VPAY YR I R P +
Sbjct: 140 RDLTDAAIGPAYREWSTFAVGPGHCLQLHDRARSLVVPAYAYRK-----LHPIQRPIPSA 194
Query: 210 FAFYSDDHGRTWRCGGLVPNLRSGECQLAAVDGGQAGSFLYCNARSPLGSRVQALSTDEG 269
F F S DHGRTW G V + ECQ+A V+ G+ + NARS L +RVQA ST++G
Sbjct: 195 FCFLSHDHGRTWARGHFVAQ-DTLECQVAEVETGEQ-RVVTLNARSHLRARVQAQSTNDG 252
Query: 270 TSFLPAERVASLPE-TAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHE- 327
F ++ V L E GCQGS++ FP+P GPGSP Q L H
Sbjct: 253 LDFQESQLVKKLVEPPPQGCQGSVISFPSPRS----------GPGSPAQWLLYTHPTHSW 302
Query: 328 -------------PPEEAAVDPRGGQVPGGPFSRLQPRGDGP 356
P EA +P +S LQ G GP
Sbjct: 303 QRADLGAYLNPRPPAPEAWSEPVLLAKGSCAYSDLQSMGTGP 344
Score = 81.3 bits (199), Expect = 2e-15
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 361 PRPGVSGDVGSWTLALPMPFAAPPQSPTWLLYSHPVGRRARLHMGIRLSQSPLDPRSWTE 420
P G G V ++ P P + P WLLY+HP R +G L+ P P +W+E
Sbjct: 268 PPQGCQGSV----ISFPSPRSGPGSPAQWLLYTHPTHSWQRADLGAYLNPRPPAPEAWSE 323
Query: 421 PWVIYEGPSGYSDLASIGPAPEGGLVFACLYESGARTSYDEISFCTFSLRE 471
P ++ +G YSDL S+G P+G +F CLYE+ Y+EI F F+L++
Sbjct: 324 PVLLAKGSCAYSDLQSMGTGPDGSPLFGCLYEA---NDYEEIVFLMFTLKQ 371
>gi|4557791 neuraminidase precursor [Homo sapiens]
Length = 415
Score = 66.6 bits (161), Expect = 5e-11
Identities = 66/207 (31%), Positives = 95/207 (45%), Gaps = 34/207 (16%)
Query: 33 TYRVPSLLPVPPGPTLLAFVEQR-LSPDDSHAHRLVLRRGTLAGGSVRWGALHVLGTAAL 91
T+R+P + P G TLLAF E R +S D A + LRR ++ GS ++ +
Sbjct: 76 TFRIPLITATPRG-TLLAFAEARKMSSSDEGAKFIALRR-SMDQGSTWSPTAFIVNDGDV 133
Query: 92 AEHRSMNPCPVHDAGTGTVFLFFIAVLGHTPEAVQIATGRNAARLCCVASRDAGLSWGSA 151
+ ++ V D TG VFLF+ ++ H G A V S+D G+SW +
Sbjct: 134 PDGLNLGAV-VSDVETGVVFLFY-SLCAHK-------AGCQVASTMLVWSKDDGVSWSTP 184
Query: 152 RDLTEEAIGGAVQDWATFAVGPGHGVQLP----SGRLLVPAYTYRVDRRECFGKICRTSP 207
R+L+ + IG V FA GPG G+Q GRL+V + G + R
Sbjct: 185 RNLSLD-IGTEV-----FAPGPGSGIQKQREPRKGRLIVCGH----------GTLERDGV 228
Query: 208 HSFAFYSDDHGRTWRCGGLVPNLRSGE 234
F SDDHG +WR G V + G+
Sbjct: 229 --FCLLSDDHGASWRYGSGVSGIPYGQ 253
Score = 32.7 bits (73), Expect = 0.78
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 390 LLYSHPVGRRARLHMGIRLSQSPLDPRSWTEPWV-IYEGPSGYSDLASIGPAPEG---GL 445
+ +S+P R+++ +R S S + SW + V ++ GPSGYS LA++ + +G
Sbjct: 330 VFFSNPAHPEFRVNLTLRWSFS--NGTSWRKETVQLWPGPSGYSSLATLEGSMDGEEQAP 387
Query: 446 VFACLYESGARTSYDEISFCTFSL 469
LYE G + IS S+
Sbjct: 388 QLYVLYEKGRNHYTESISVAKISV 411
>gi|222446620 hypothetical protein LOC342346 [Homo sapiens]
Length = 1141
Score = 43.1 bits (100), Expect = 6e-04
Identities = 48/142 (33%), Positives = 55/142 (38%), Gaps = 19/142 (13%)
Query: 256 PLGSRVQALSTDEGTSFLPAERVASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVG---P 312
P GS QA+S PA+ A PE+A GC P PAP +G
Sbjct: 290 PEGSSAQAVSLSRAQE--PAQPPALTPESAPGCTTEFA--PGPAPGTEPVPGLELGLELE 345
Query: 313 GSPLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQP--GPRPGVSGDVG 370
P P+ GP V P A P G VP P ++ P GD P P P P VG
Sbjct: 346 PVPALGPVPGPSV-TPGSLPAPWPVLGPVP-APGAQPPPLGDWPALPRRWPLPQGWPRVG 403
Query: 371 SWTL--------ALPMPFAAPP 384
SW L P P APP
Sbjct: 404 SWPLWDLGVLRPTQPQPSRAPP 425
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 42.7 bits (99), Expect = 8e-04
Identities = 29/75 (38%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 297 APAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVD-PRGGQVPGGPFSRLQPRGDG 355
AP PR D G P PP PG PP + D PRG Q P GP + +P DG
Sbjct: 167 APGDFGPRGDQGQDGAAGPPGPPG-PPGARGPPGDTGKDGPRGAQGPAGP--KGEPGQDG 223
Query: 356 PRQPGPRPGVSGDVG 370
P PG G+ G
Sbjct: 224 EMGPKGPPGPKGEPG 238
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 42.4 bits (98), Expect = 0.001
Identities = 37/138 (26%), Positives = 50/138 (36%), Gaps = 23/138 (16%)
Query: 282 PETAWGCQGSIVGFPAPAPNR------------PRDDSWSVGPGSPLQPPLLGPGVHEPP 329
P+ G Q G +P +R P W +G P + LGPGV
Sbjct: 45 PQAPEGSQAGAEGPSSPEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTG 104
Query: 330 EEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPRPGVSGDVGSWTLALPMPFAAPPQSPTW 389
E A G++ P PR P PGP+PG + G L AAP PT
Sbjct: 105 EPA------GEIWYNPIPEEDPRPPAPEPPGPQPGSAESEG-----LAPQGAAPASPPTK 153
Query: 390 LLYSHPVGRRARLHMGIR 407
+ G RL + ++
Sbjct: 154 ASRTKSPGPARRLSIKMK 171
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 42.0 bits (97), Expect = 0.001
Identities = 37/135 (27%), Positives = 48/135 (35%), Gaps = 38/135 (28%)
Query: 318 PPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPRP-------------- 363
PP+ VHEPP E A + P LQP D P+QPG P
Sbjct: 957 PPIQVTKVHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPRGKSRSPAPPADKE 1016
Query: 364 ---------------GVSGDVGSWTLALPMP------FAAPPQSPTWLLYSH-PVGRRAR 401
+ GD WT LP P A P +P +S+ P G
Sbjct: 1017 AEKPVFFPAFAAEAQKLPGDPPCWTSGLPFPVPPREVIKASPHAPDPSAFSYAPPGH--P 1074
Query: 402 LHMGIRLSQSPLDPR 416
L +G+ + P+ PR
Sbjct: 1075 LPLGLHDTARPVLPR 1089
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 41.2 bits (95), Expect = 0.002
Identities = 33/93 (35%), Positives = 37/93 (39%), Gaps = 16/93 (17%)
Query: 290 GSIVGFPAPA--PNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPFS 347
G + G+P PA P P S PGSP P GP P E P G P G
Sbjct: 167 GGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGP----PGEPGQAGPSGPPGPPGAIG 222
Query: 348 RLQPRG-DG----PRQPGPR-----PGVSGDVG 370
P G DG P +PG R PG+ G G
Sbjct: 223 PSGPAGKDGESGRPGRPGERGLPGPPGIKGPAG 255
Score = 31.2 bits (69), Expect = 2.3
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 11/80 (13%)
Query: 300 PNRPRDDSWSVGPGSPLQPPLLG-PGVHEPPEE----AAVDPRGGQ-VPGGPFSRLQPRG 353
P P + GP P P G PG+ P E + P+G + PGGP + P
Sbjct: 700 PPGPEGGKGAAGPPGP--PGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGK 757
Query: 354 DGPRQP-GP--RPGVSGDVG 370
DGPR P GP PG +G G
Sbjct: 758 DGPRGPTGPIGPPGPAGQPG 777
Score = 31.2 bits (69), Expect = 2.3
Identities = 34/112 (30%), Positives = 40/112 (35%), Gaps = 21/112 (18%)
Query: 276 ERVASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVG-------------PGSPLQPPLLG 322
+R S P G G AP P PR D G PG+P P G
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 1122
Query: 323 PGVHEPPEEAAVDPRGGQVPGGPFSRLQPRG-DGPR-QPGP--RPGVSGDVG 370
P ++ A+ G P GP P G DG PGP PG G+ G
Sbjct: 1123 PA----GQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRG 1170
Score = 30.8 bits (68), Expect = 3.0
Identities = 36/108 (33%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 267 DEGTSFLPAERVASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVH 326
++G P E A+ A G +G+ GF PA P GP P GP
Sbjct: 463 EDGKDGSPGEPGANGLPGAAGERGA-PGFRGPAG--PNGIPGEKGPAGERGAP--GPA-- 515
Query: 327 EPPEEAAVDPRGGQVPGGPFSRLQPRGDG----PRQPGPRPGVSGDVG 370
P AA +P VPGGP R P G +PGP PG G+ G
Sbjct: 516 -GPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGP-PGSQGESG 561
Score = 30.0 bits (66), Expect = 5.1
Identities = 34/119 (28%), Positives = 43/119 (36%), Gaps = 31/119 (26%)
Query: 282 PETAWGCQGSIVGFPAPAPNRPRDDSWSVGP-GSPLQPPLLG------------------ 322
PE +G ++ P AP RP + GP G P P + G
Sbjct: 77 PEIPFGECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPG 136
Query: 323 -PGVHE---------PPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPRPGVSGDVGS 371
PG+ E P+ + D + G GG P G P PGP PG SG GS
Sbjct: 137 PPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGP-PGPPGP-PGTSGHPGS 193
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 40.8 bits (94), Expect = 0.003
Identities = 53/178 (29%), Positives = 62/178 (34%), Gaps = 21/178 (11%)
Query: 282 PETAWGCQGSI--VGFPAP----APNRPRDDSWSVGPGSP--LQPPLLGPGVHEPPEEAA 333
P+ G QG I G P P P P GP P +Q P G+ P
Sbjct: 707 PQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQG 766
Query: 334 VDPRGGQVPGGPFSRLQPRG-DGPRQPGPRPGVSGDVGSWTLALPMPFAAPPQSPTWLLY 392
+ G V GP L PRG GP PGPR + P P P LL
Sbjct: 767 IQ---GPVSQGPLMGLNPRGMQGP--PGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLG 821
Query: 393 SHPVGRRARLHMGIRLSQSPLDPRSWTEPWVIYEGPSGYSDL-----ASIGPAPEGGL 445
P + R IR Q P S P GP G S+GP P+GG+
Sbjct: 822 HGP--QEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGM 877
Score = 33.5 bits (75), Expect = 0.46
Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 14/112 (12%)
Query: 289 QGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPG-GPFS 347
QGS++G P P S P L PP G P + +P G P GP
Sbjct: 842 QGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIP 901
Query: 348 RLQPR----GDGPRQP--------GPRPGVSGDVGSWTLALPMPFAAPPQSP 387
Q + GDGPR P GP P + G +G +P P Q P
Sbjct: 902 FQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPG-LGQQGAQGRIPPLNPGQGP 952
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 40.0 bits (92), Expect = 0.005
Identities = 41/129 (31%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 265 STDEGTSFLPAERVASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPG 324
S +GTS +++ A P++ Q P P P P P PL+PP GP
Sbjct: 378 SHSDGTSTASSQQQAP-PQSVPPSQIQAPPMPGPPPLGPP-------PAPPLRPP--GPP 427
Query: 325 VHEPPEEAAVDPRGGQVPG-----GPFSRLQPRGDGP-RQPGPRPGVSGDVGSWTLALPM 378
PP P + PG GP RL P G P R PGP PG + P
Sbjct: 428 TGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGLPPG----PP 483
Query: 379 PFAAPPQSP 387
P PP+ P
Sbjct: 484 PRGPPPRLP 492
Score = 34.3 bits (77), Expect = 0.27
Identities = 28/78 (35%), Positives = 29/78 (37%), Gaps = 12/78 (15%)
Query: 296 PAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPP--EEAAVDPRGGQV------PGGPFS 347
P P P RP PG P PP GP PP PR G + P GP
Sbjct: 460 PGPPPGRPPGPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGP-- 517
Query: 348 RLQPRGDGPRQPGPRPGV 365
P G P P P PGV
Sbjct: 518 --APPGLFPPAPLPNPGV 533
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 39.7 bits (91), Expect = 0.006
Identities = 37/135 (27%), Positives = 49/135 (36%), Gaps = 39/135 (28%)
Query: 318 PPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPRP-------------- 363
PP++ VHEPP E A + P LQP D P+QPG P
Sbjct: 974 PPIVTK-VHEPPREDAAPTKPAPPAPPPPQNLQPESDAPQQPGSSPRGKSRSPAPPADKE 1032
Query: 364 ---------------GVSGDVGSWTLALPMP------FAAPPQSPTWLLYSH-PVGRRAR 401
+ GD WT LP P A P +P +S+ P G
Sbjct: 1033 AEKPVFFPAFAAEAQKLPGDPPCWTSGLPFPVPPREVIKASPHAPDPSAFSYAPPGH--P 1090
Query: 402 LHMGIRLSQSPLDPR 416
L +G+ + P+ PR
Sbjct: 1091 LPLGLHDTARPVLPR 1105
>gi|11386197 forkhead box E3 [Homo sapiens]
Length = 319
Score = 39.7 bits (91), Expect = 0.006
Identities = 77/267 (28%), Positives = 90/267 (33%), Gaps = 42/267 (15%)
Query: 156 EEAIGGAVQDWATFAVGPGHGVQLPSGR---------LLVPAYTYRVDRRECFGKICRTS 206
EEA G + T A GPG + P R L+ A + RR I R
Sbjct: 42 EEAAAGRGEAAPTPAPGPGRRRRRPLQRGKPPYSYIALIAMALAHAPGRRLTLAAIYRFI 101
Query: 207 PHSFAFYSDDHGRTWRCGGLVPNLRSGECQLAAV-DGGQAGSFLYCNARSPLGSRVQALS 265
FAFY D R W+ + NL +C + + G G Y A
Sbjct: 102 TERFAFYRDSP-RKWQ-NSIRHNLTLNDCFVKVPREPGNPGKGNYWTL-----DPAAADM 154
Query: 266 TDEGTSFLPAERV--ASLPETAWGCQGSIVGFP----APAPNRPR---DDSWSVGPGSP- 315
D G+ +R A LP A G + FP APAP S GP P
Sbjct: 155 FDNGSFLRRRKRFKRAELPAHAAAAPGPPLPFPYAPYAPAPGPALLVPPPSAGPGPSPPA 214
Query: 316 ----------LQPPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPR----GDGPRQPGP 361
LQP L G G EPP AA D P + P D P
Sbjct: 215 RLFSVDSLVNLQPELAGLGAPEPPCCAAPDAAAAAFPPCAAAASPPLYSQVPDRLVLPAT 274
Query: 362 RPGVSGDVGSWTLALPMPFAA-PPQSP 387
RPG LAL P AA P SP
Sbjct: 275 RPGPGPLPAEPLLALAGPAAALGPLSP 301
>gi|60498978 elastin microfibril interfacer 2 [Homo sapiens]
Length = 1053
Score = 39.3 bits (90), Expect = 0.008
Identities = 43/135 (31%), Positives = 54/135 (40%), Gaps = 17/135 (12%)
Query: 259 SRVQALSTD--EGTSFLPAERVASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVGPGS-- 314
S V +STD + F P+ + S P A + + P PAP RP + + PG
Sbjct: 767 SHVFQISTDLQDLVKFQPSAKAPSPPPPAEAPKEPLQ--PEPAPPRPSGPATAEDPGRRP 824
Query: 315 --PLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPRPGVSGDVGSW 372
P +PP P +PP V GQ GP P G G G GV G GS
Sbjct: 825 VLPQRPPEERP--PQPPGSTGVIAETGQ--AGP-----PAGAGVSGRGLPRGVDGQTGSG 875
Query: 373 TLALPMPFAAPPQSP 387
T+ FA P P
Sbjct: 876 TVPGAEGFAGAPGYP 890
>gi|118344450 cell death inducing protein [Homo sapiens]
Length = 208
Score = 39.3 bits (90), Expect = 0.008
Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
Query: 298 PAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPP---------------EEAAVDPRGGQVP 342
P P R PG PL P +GP +EPP + P G P
Sbjct: 26 PTPGRSSPAVMQPPPGMPLPPADIGPPPYEPPGHPMPQPGFIPPHMSADGTYMPPGFYPP 85
Query: 343 GGPFSRLQPRGDGPRQPGPRPGVSG 367
GP + GP PGP PG G
Sbjct: 86 PGPHPPMGYYPPGPYTPGPYPGPGG 110
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 39.3 bits (90), Expect = 0.008
Identities = 35/111 (31%), Positives = 40/111 (36%), Gaps = 12/111 (10%)
Query: 282 PETAWGCQGSIV---GFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRG 338
P +GC + FP P P RP GP P L P + P +A RG
Sbjct: 21 PPAPFGCPPPPLPSPAFPPPLPQRP-------GPFPGASAPFLQPPLALQPRASAEASRG 73
Query: 339 GQVPGGPFSRLQPRGDGPRQPGPRPGVSGDVGSWTLALPMPFAAPPQSPTW 389
G G F + P P P RP D G P P PP SP W
Sbjct: 74 GG-GAGAFYPVPPPPLPPPPPQCRPFPGTDAGERPRP-PPPGPGPPWSPRW 122
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 38.9 bits (89), Expect = 0.011
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 318 PPLLGPGVHEPPEEAAVDPRGGQVPGG-----PFSRLQPRGDGPRQPGPRPGVSGDVGSW 372
P + GPG+ +PP PR G+ PG P +R P R P P G G G W
Sbjct: 28 PLMFGPGLRDPPPPRPAPPRPGEEPGNRHPPPPAARTHPGSCRARCPSPAAG--GLRGPW 85
Query: 373 TLA 375
T A
Sbjct: 86 TAA 88
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 38.9 bits (89), Expect = 0.011
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 297 APAPNRPRDDSWSVGPGSPLQPPLLG--PGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGD 354
AP P R +S G P PP PG P A D G GGPF D
Sbjct: 987 APGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGS--GGPFWSTARSAD 1044
Query: 355 GPRQPGPRPGVSGDVG 370
GP+ P PG+ GD G
Sbjct: 1045 GPQGPPGLPGLKGDPG 1060
Score = 31.6 bits (70), Expect = 1.7
Identities = 47/184 (25%), Positives = 63/184 (34%), Gaps = 40/184 (21%)
Query: 298 PAPNRPRDDSWS-VGPGSPLQPPLLGPGVHEPPEEAAVD----PRGGQVPGGPFSRLQPR 352
P P +P D+ + V P + P PG EPP E D P + P P +
Sbjct: 51 PLPVQPTADTTTHVTPRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEENI--A 108
Query: 353 GDGPRQPGPRPGVSGDVGSWT----------------------LALPMPFAAPPQSPTWL 390
G G G+ V W LAL P + P ++ T L
Sbjct: 109 GVGAEILNVAKGIRSFVQLWNDTVPTESLARAETLVLETPVGPLALAGPSSTPQENGTTL 168
Query: 391 LYSHPVGRRARLH---MGIRLSQSPLDPRSWTEPWVIYEGP------SGYSDLAS-IGPA 440
S + H G + +P P S PW GP SG + L+S +G A
Sbjct: 169 WPSRGIPSSPGAHTTEAGTLPAPTP-SPPSLGRPWAPLTGPSVPPPSSGRASLSSLLGGA 227
Query: 441 PEGG 444
P G
Sbjct: 228 PPWG 231
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 294 GFPAPAPNRPRDDSWSVGP-GSPLQPPLLGPGVHEPPEEAAVDPRGGQV-PGGPFSRLQP 351
GFP PA P+ + S G GSP GP + + P GG + P ++ +P
Sbjct: 1151 GFPGPAG--PKGNLGSKGERGSP------GPKGEKGEPGSIFSPDGGALGPAQKGAKGEP 1202
Query: 352 RGDGPRQPGPRPGVSGDVG 370
GP P RPG G++G
Sbjct: 1203 GFRGPPGPYGRPGYKGEIG 1221
Score = 29.6 bits (65), Expect = 6.6
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 310 VGPGSPLQPPLLGP-GVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPRPGVSGD 368
+GP P + GP G PP R G+ PG P +P GP+ PG GD
Sbjct: 790 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE-PGDPGEDGKPGDTGPQ---GFPGTPGD 845
Query: 369 VG 370
VG
Sbjct: 846 VG 847
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 38.9 bits (89), Expect = 0.011
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 297 APAPNRPRDDSWSVGPGSPLQPPLLG--PGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGD 354
AP P R +S G P PP PG P A D G GGPF D
Sbjct: 572 APGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGS--GGPFWSTARSAD 629
Query: 355 GPRQPGPRPGVSGDVG 370
GP+ P PG+ GD G
Sbjct: 630 GPQGPPGLPGLKGDPG 645
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 294 GFPAPAPNRPRDDSWSVGP-GSPLQPPLLGPGVHEPPEEAAVDPRGGQV-PGGPFSRLQP 351
GFP PA P+ + S G GSP GP + + P GG + P ++ +P
Sbjct: 736 GFPGPAG--PKGNLGSKGERGSP------GPKGEKGEPGSIFSPDGGALGPAQKGAKGEP 787
Query: 352 RGDGPRQPGPRPGVSGDVG 370
GP P RPG G++G
Sbjct: 788 GFRGPPGPYGRPGYKGEIG 806
Score = 29.6 bits (65), Expect = 6.6
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 310 VGPGSPLQPPLLGP-GVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPRPGVSGD 368
+GP P + GP G PP R G+ PG P +P GP+ PG GD
Sbjct: 375 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE-PGDPGEDGKPGDTGPQ---GFPGTPGD 430
Query: 369 VG 370
VG
Sbjct: 431 VG 432
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 38.9 bits (89), Expect = 0.011
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 297 APAPNRPRDDSWSVGPGSPLQPPLLG--PGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGD 354
AP P R +S G P PP PG P A D G GGPF D
Sbjct: 752 APGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGS--GGPFWSTARSAD 809
Query: 355 GPRQPGPRPGVSGDVG 370
GP+ P PG+ GD G
Sbjct: 810 GPQGPPGLPGLKGDPG 825
Score = 31.2 bits (69), Expect = 2.3
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 294 GFPAPAPNRPRDDSWSVGP-GSPLQPPLLGPGVHEPPEEAAVDPRGGQV-PGGPFSRLQP 351
GFP PA P+ + S G GSP GP + + P GG + P ++ +P
Sbjct: 916 GFPGPAG--PKGNLGSKGERGSP------GPKGEKGEPGSIFSPDGGALGPAQKGAKGEP 967
Query: 352 RGDGPRQPGPRPGVSGDVG 370
GP P RPG G++G
Sbjct: 968 GFRGPPGPYGRPGYKGEIG 986
Score = 29.6 bits (65), Expect = 6.6
Identities = 40/162 (24%), Positives = 53/162 (32%), Gaps = 33/162 (20%)
Query: 298 PAPNRPRDDSWS-VGPGSPLQPPLLGPGVHEPPEEAAVD----PRGGQVPGGPFSRLQPR 352
P P +P D+ + V P + P PG EPP E D P + P P +
Sbjct: 51 PLPVQPTADTTTHVTPRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEENI--A 108
Query: 353 GDGPRQPGPRPGVSGDVGSWT----------------------LALPMPFAAPPQSPTWL 390
G G G+ V W LAL P + P ++ T L
Sbjct: 109 GVGAEILNVAKGIRSFVQLWNDTVPTESLARAETLVLETPVGPLALAGPSSTPQENGTTL 168
Query: 391 LYSHPVGRRARLH---MGIRLSQSPLDPRSWTEPWVIYEGPS 429
S + H G + +P P S PW GPS
Sbjct: 169 WPSRGIPSSPGAHTTEAGTLPAPTP-SPPSLGRPWAPLTGPS 209
Score = 29.6 bits (65), Expect = 6.6
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 310 VGPGSPLQPPLLGP-GVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDGPRQPGPRPGVSGD 368
+GP P + GP G PP R G+ PG P +P GP+ PG GD
Sbjct: 555 LGPAGPALQTVPGPQGPPGPPGRDGTPGRDGE-PGDPGEDGKPGDTGPQ---GFPGTPGD 610
Query: 369 VG 370
VG
Sbjct: 611 VG 612
>gi|42475558 SMG-7 homolog isoform 1 [Homo sapiens]
Length = 1137
Score = 38.9 bits (89), Expect = 0.011
Identities = 46/179 (25%), Positives = 65/179 (36%), Gaps = 29/179 (16%)
Query: 270 TSFLPAERVASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPP 329
+ F+P + P S GFP P P ++S+G G + PG P
Sbjct: 644 SQFIPIHHPGAFPPLP-----SRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQP 698
Query: 330 EEAAVDPRGGQVPGG-----PFSRLQPRGDGPRQPGPRPGVSGDVGSWTLALPMPFA--- 381
A P G QV G P+S+ +P G GP GP+ T P A
Sbjct: 699 --TAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQST 756
Query: 382 ---------APPQSPTWLLYSHPVGRRARLHMGI-RLSQSPLDPRSWTEPWVIYEGPSG 430
QSPT + + +G+ H G + Q+ + W P V +GP G
Sbjct: 757 SQLQVQALTQQQQSPTKAVPA--LGKSPPHHSGFQQYQQADASKQLWNPPQV--QGPLG 811
>gi|42476066 SMG-7 homolog isoform 4 [Homo sapiens]
Length = 1049
Score = 38.9 bits (89), Expect = 0.011
Identities = 46/179 (25%), Positives = 65/179 (36%), Gaps = 29/179 (16%)
Query: 270 TSFLPAERVASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPP 329
+ F+P + P S GFP P P ++S+G G + PG P
Sbjct: 556 SQFIPIHHPGAFPPLP-----SRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQP 610
Query: 330 EEAAVDPRGGQVPGG-----PFSRLQPRGDGPRQPGPRPGVSGDVGSWTLALPMPFA--- 381
A P G QV G P+S+ +P G GP GP+ T P A
Sbjct: 611 --TAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQST 668
Query: 382 ---------APPQSPTWLLYSHPVGRRARLHMGI-RLSQSPLDPRSWTEPWVIYEGPSG 430
QSPT + + +G+ H G + Q+ + W P V +GP G
Sbjct: 669 SQLQVQALTQQQQSPTKAVPA--LGKSPPHHSGFQQYQQADASKQLWNPPQV--QGPLG 723
>gi|42476070 SMG-7 homolog isoform 2 [Homo sapiens]
Length = 1091
Score = 38.9 bits (89), Expect = 0.011
Identities = 46/179 (25%), Positives = 65/179 (36%), Gaps = 29/179 (16%)
Query: 270 TSFLPAERVASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPP 329
+ F+P + P S GFP P P ++S+G G + PG P
Sbjct: 598 SQFIPIHHPGAFPPLP-----SRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSVPGTFLQP 652
Query: 330 EEAAVDPRGGQVPGG-----PFSRLQPRGDGPRQPGPRPGVSGDVGSWTLALPMPFA--- 381
A P G QV G P+S+ +P G GP GP+ T P A
Sbjct: 653 --TAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQST 710
Query: 382 ---------APPQSPTWLLYSHPVGRRARLHMGI-RLSQSPLDPRSWTEPWVIYEGPSG 430
QSPT + + +G+ H G + Q+ + W P V +GP G
Sbjct: 711 SQLQVQALTQQQQSPTKAVPA--LGKSPPHHSGFQQYQQADASKQLWNPPQV--QGPLG 765
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 38.5 bits (88), Expect = 0.014
Identities = 35/94 (37%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 298 PAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVD-PRGG---QVPGGPFSRLQPRG 353
P P + S+GP P P L G G+ PP EA V P GG + P GP S L
Sbjct: 94 PGPKGAPGERGSLGPPGP--PGLGGKGLPGPPGEAGVSGPPGGIGLRGPPGP-SGLPGLP 150
Query: 354 DGPRQPGPRPGVSGDVGSWTLALPMPFAAPPQSP 387
P PGP PG G + L P PP P
Sbjct: 151 GPPGPPGP-PGHPGVLPEGATDLQCPSICPPGPP 183
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 38.5 bits (88), Expect = 0.014
Identities = 48/142 (33%), Positives = 54/142 (38%), Gaps = 32/142 (22%)
Query: 294 GFPAPAPNR---PRDDSWSVGPGSPLQPPLLGPGVHEPPEE---------AAVDPRGGQV 341
G PAP P P S+ PG +QP L PGV P E A PRG
Sbjct: 261 GIPAPGPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVT 320
Query: 342 PGGPFSRLQPR---GDGPRQP--GPRPGVSGDVGSWTLALPMPFAAPP-QSPTWLLYSHP 395
PGG L PR GD P P G V+G+V P + PP Q P H
Sbjct: 321 PGG----LPPRGLLGDAPNDPRGGTLLSVTGEVE------PRGYLGPPHQGPP---MHHA 367
Query: 396 VGRRARLHMGIRLSQSPL-DPR 416
G R + PL DPR
Sbjct: 368 SGHDTRGPSSHEMRGGPLGDPR 389
>gi|6912582 penta-EF-hand domain containing 1 [Homo sapiens]
Length = 284
Score = 38.5 bits (88), Expect = 0.014
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 11/72 (15%)
Query: 312 PGSPLQPPLLGPGVHEP-----PEEAAVDPRGGQVPGGPFSRLQPRGDGPRQP------G 360
PG P PP G P P P GG PGGP+ + P G +QP G
Sbjct: 51 PGGPYGPPAGGGPYGHPNPGMFPSGTPGGPYGGAAPGGPYGQPPPSSYGAQQPGLYGQGG 110
Query: 361 PRPGVSGDVGSW 372
P V + SW
Sbjct: 111 APPNVDPEAYSW 122
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 38.1 bits (87), Expect = 0.019
Identities = 29/101 (28%), Positives = 36/101 (35%), Gaps = 25/101 (24%)
Query: 354 DGPRQPGPRPGVSGDVGSWTLALPMPFAAPPQSPTWLLYSHPVGRRARLHMGIRLSQSPL 413
D P PGP S +G P P APPQ P + YSH + +P
Sbjct: 10 DSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSH-------------VEPAPA 56
Query: 414 DPRSWTEP-------WVIYEGPSGYSDLAS-----IGPAPE 442
P +W P W GP + AS GP P+
Sbjct: 57 PPTAWGAPFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPD 97
Score = 31.6 bits (70), Expect = 1.7
Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 16/89 (17%)
Query: 279 ASLPETAWGCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPP---LLGPGVHEPPEEAAVD 335
A P TAWG P PAP ++ GP +P P GP P A
Sbjct: 54 APAPPTAWGA-------PFPAPKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPG 106
Query: 336 PRGG---QVPGGPFSRLQPRGDGPRQPGP 361
P G Q GGP + P G ++P P
Sbjct: 107 PGPGLLAQPLGGPGT---PSSPGAQRPTP 132
>gi|130492454 zinc finger RNA binding protein 2 isoform 1 [Homo
sapiens]
Length = 939
Score = 38.1 bits (87), Expect = 0.019
Identities = 44/158 (27%), Positives = 60/158 (37%), Gaps = 32/158 (20%)
Query: 230 LRSGECQLAAVDGGQAGSFLYCNARSPLGSRVQALSTDEGT---SFLPAERVAS--LPET 284
L+SG ++ A D GQ G+ C SP GS A + S PA ++S T
Sbjct: 113 LQSG--RMTAADSGQPGTQEACGQPSPHGSHSHAQPPQQAPIVESGQPASTLSSGYTYPT 170
Query: 285 AWGCQGS-----IVGFPAP----------APNRPRDDSWSVGPGSPLQPPLLGPGVHEPP 329
A G Q + +P P AP+ P D+ SP PP P PP
Sbjct: 171 ATGVQPESSASIVTSYPPPSYNPTCTAYTAPSYPNYDASVYSAASPFYPPAQPPPPPGPP 230
Query: 330 EE---------AAVDPRGGQVPGGPFSRLQPRGDGPRQ 358
++ + PR P P +P+ GPRQ
Sbjct: 231 QQLPPPPAPAGSGSSPRADSKPPLPSKLPRPKA-GPRQ 267
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 38.1 bits (87), Expect = 0.019
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 298 PAPNRPRDDSWSVGPGSPLQPPLLGPGVH-EPPEEAAVDPRGGQVPGGPFSRLQPRGDGP 356
P P P+ GP P L PG H +PP +PRGG+ P+ + +G P
Sbjct: 202 PGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHHPPYHQQHHQGPPP 261
Query: 357 RQPGPR 362
PG R
Sbjct: 262 GGPGGR 267
Score = 33.5 bits (75), Expect = 0.46
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 351 PRGDGPRQPGPRPGVSGDVGSWTLALPMPFAAPPQSPTWLLYSHPVGRRARLHMGIRLSQ 410
P G GP Q GP+P + P P PPQ P H + H + Q
Sbjct: 46 PMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPP----PHQPPPHPQPH---QQQQ 98
Query: 411 SPLDPRSWTEPWVIYEGPSGYSDLASIGPA 440
P P+ ++P V+ +GP + S PA
Sbjct: 99 PPPPPQDSSKP-VVAQGPGPAPGVGSAPPA 127
Score = 32.3 bits (72), Expect = 1.0
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 296 PAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPG-GPFSRLQPRGD 354
P P P P + S PG+P P PP+ P VPG GP + P
Sbjct: 147 PGPTPTPPPAVT-SAPPGAPPPTPPSSGVPTTPPQAGGPPPPPAAVPGPGPGPKQGPGPG 205
Query: 355 GPR----QPGPRPGVSGDVGSWTLALPMPFAAPP 384
GP+ GP+PG G L+ P PP
Sbjct: 206 GPKGGKMPGGPKPG-----GGPGLSTPGGHPKPP 234
Score = 32.0 bits (71), Expect = 1.3
Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 287 GCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPF 346
G G P P P++ + P QPP P H+PP P Q P P
Sbjct: 52 GQSGPKPPIPPPPPHQQQQQP------PPQQPPPQQPPPHQPPPHP--QPHQQQQPPPP- 102
Query: 347 SRLQPRGDGPRQPGPRPGVSGDVGSWTLALPMPFAAPPQSP 387
+ + + PGP PGV A P +APP +P
Sbjct: 103 PQDSSKPVVAQGPGPAPGVGS-------APPASSSAPPATP 136
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 37.4 bits (85), Expect = 0.032
Identities = 30/94 (31%), Positives = 34/94 (36%), Gaps = 6/94 (6%)
Query: 296 PAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPFSRLQPRGDG 355
P P P P D + P P GP EP E + P G P GP +P
Sbjct: 562 PGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETP--GPRPAGPAGD-EPAESP 618
Query: 356 PRQPGPRPGVSGDVGSWTLALPMPFAAP-PQSPT 388
PGPRP +G G P P P PT
Sbjct: 619 SETPGPRP--AGPAGDEPAESPSETPGPSPAGPT 650
Score = 35.8 bits (81), Expect = 0.092
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 287 GCQGSIVGFPAPAPNRPRDDSWSVGPGSPLQPPLLGPGVHEPPEEAAVDPRGGQVPGGPF 346
G GS P P+P P D + P P GP EP E + P G P GP
Sbjct: 513 GTPGSPSETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETP--GPRPAGPA 570
Query: 347 SRLQPRGDGPRQPGPRP 363
+P PGP P
Sbjct: 571 GD-EPAESPSETPGPSP 586
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,953,693
Number of Sequences: 37866
Number of extensions: 1657920
Number of successful extensions: 6636
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 418
Number of HSP's that attempted gapping in prelim test: 5644
Number of HSP's gapped (non-prelim): 1354
length of query: 496
length of database: 18,247,518
effective HSP length: 106
effective length of query: 390
effective length of database: 14,233,722
effective search space: 5551151580
effective search space used: 5551151580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.